RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 STAC3Q96MF2 364 aa8.47□□□□□ -1.05
CD44-233ENST00000531141 TMUB1Q9BVT8 246 aa8.47□□□□□ -1.05
CD44-233ENST00000531141 NLRP7Q8WX94 980 aa8.46□□□□□ -1.06
CD44-233ENST00000531141 KDM4CQ9H3R0 1056 aa8.46□□□□□ -1.06
CD44-233ENST00000531141 GPBP1L1Q9HC44 474 aaPredicted RBP8.46□□□□□ -1.06
CD44-233ENST00000531141 SLC4A3P48751 1232 aa8.45□□□□□ -1.06
CD44-233ENST00000531141 DAXXQ9UER7 740 aaPredicted RBP8.45□□□□□ -1.06
CD44-233ENST00000531141 SULF1Q8IWU6 871 aa8.44□□□□□ -1.06
CD44-233ENST00000531141 ZFRQ96KR1 1074 aaKnown RBP8.44□□□□□ -1.06
CD44-233ENST00000531141 FAM217BQ9NTX9 383 aaPredicted RBP8.44□□□□□ -1.06
CD44-233ENST00000531141 ANKK1Q8NFD2 765 aa8.43□□□□□ -1.06
CD44-233ENST00000531141 REPIN1Q9BWE0 567 aaKnown RBP8.43□□□□□ -1.06
CD44-233ENST00000531141 GOLGA8CPA6NN73 597 aa8.42□□□□□ -1.06
CD44-233ENST00000531141 HDGFP51858 240 aaKnown RBP8.42□□□□□ -1.06
CD44-233ENST00000531141 SWT1Q5T5J6 900 aaKnown RBP8.42□□□□□ -1.06
CD44-233ENST00000531141 SLF2Q8IX21 1173 aa8.42□□□□□ -1.06
CD44-233ENST00000531141 SAMD7Q7Z3H4 446 aa8.41□□□□□ -1.06
CD44-233ENST00000531141 LRCH3Q96II8 777 aa8.41□□□□□ -1.06
CD44-233ENST00000531141 NECTIN2Q92692 538 aa8.4□□□□□ -1.06
CD44-233ENST00000531141 DDRGK1Q96HY6 314 aa8.4□□□□□ -1.06
CD44-233ENST00000531141 MS4A1P11836 297 aa8.39□□□□□ -1.07
CD44-233ENST00000531141 SSTR3P32745 418 aaPredicted RBP8.39□□□□□ -1.07
CD44-233ENST00000531141 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.39□□□□□ -1.07
CD44-233ENST00000531141 DDX11L8A8MPP1 907 aa8.38□□□□□ -1.07
CD44-233ENST00000531141 RNF40O75150 1001 aa8.38□□□□□ -1.07
CD44-233ENST00000531141 CD46P15529 392 aa8.38□□□□□ -1.07
CD44-233ENST00000531141 RSPH4AQ5TD94 716 aa8.38□□□□□ -1.07
CD44-233ENST00000531141 WNT2BQ93097 391 aa8.38□□□□□ -1.07
CD44-233ENST00000531141 SOWAHBA6NEL2 793 aa8.37□□□□□ -1.07
CD44-233ENST00000531141 RDH13Q8NBN7 331 aa8.37□□□□□ -1.07
CD44-233ENST00000531141 BEGAINQ9BUH8 593 aa8.35□□□□□ -1.07
CD44-233ENST00000531141 FAM117AQ9C073 453 aa8.35□□□□□ -1.07
CD44-233ENST00000531141 BCAMP50895 628 aa8.34□□□□□ -1.07
CD44-233ENST00000531141 THSD4Q6ZMP0 1018 aa8.34□□□□□ -1.07
CD44-233ENST00000531141 CFHP08603 1231 aa8.33□□□□□ -1.08
CD44-233ENST00000531141 SLC10A3P09131 477 aa8.33□□□□□ -1.08
CD44-233ENST00000531141 TMEM132AQ24JP5 1023 aa8.33□□□□□ -1.08
CD44-233ENST00000531141 KCTD12Q96CX2 325 aaKnown RBP8.33□□□□□ -1.08
CD44-233ENST00000531141 PRR14Q9BWN1 585 aa8.33□□□□□ -1.08
CD44-233ENST00000531141 TSR3Q9UJK0 312 aaKnown RBP8.33□□□□□ -1.08
CD44-233ENST00000531141 HPS5Q9UPZ3 1129 aa8.33□□□□□ -1.08
CD44-233ENST00000531141 PLEKHG3A1L390 1219 aa8.32□□□□□ -1.08
CD44-233ENST00000531141 DIXDC1Q155Q3 683 aa8.32□□□□□ -1.08
CD44-233ENST00000531141 KMT5BQ4FZB7 885 aa8.32□□□□□ -1.08
CD44-233ENST00000531141 GCGRP47871 477 aa8.31□□□□□ -1.08
CD44-233ENST00000531141 PLA2G2EQ9NZK7 142 aa8.31□□□□□ -1.08
CD44-233ENST00000531141 USP46P62068 366 aa8.3□□□□□ -1.08
CD44-233ENST00000531141 IL27Q8NEV9 243 aa8.3□□□□□ -1.08
CD44-233ENST00000531141 PPP4CP60510 307 aa8.29□□□□□ -1.08
CD44-233ENST00000531141 SH3D19Q5HYK7 790 aa8.29□□□□□ -1.08
CD44-233ENST00000531141 NYAP1Q6ZVC0 841 aa8.29□□□□□ -1.08
CD44-233ENST00000531141 NUTM1Q86Y26 1132 aa8.29□□□□□ -1.08
CD44-233ENST00000531141 RSPH6AQ9H0K4 717 aa8.29□□□□□ -1.08
CD44-233ENST00000531141 KDM4AO75164 1064 aa8.28□□□□□ -1.08
CD44-233ENST00000531141 TBC1D2Q9BYX2 928 aa8.28□□□□□ -1.08
CD44-233ENST00000531141 GOPCQ9HD26 462 aa8.28□□□□□ -1.08
CD44-233ENST00000531141 ACTN4O43707 911 aaKnown RBP8.27□□□□□ -1.09
CD44-233ENST00000531141 SPIRE2Q8WWL2 714 aa8.27□□□□□ -1.09
CD44-233ENST00000531141 HCSTQ9UBK5 93 aa8.27□□□□□ -1.09
CD44-233ENST00000531141 GRIPAP1Q4V328 841 aa8.26□□□□□ -1.09
CD44-233ENST00000531141 MYSM1Q5VVJ2 828 aa8.26□□□□□ -1.09
CD44-233ENST00000531141 WBP1LQ9NX94 342 aa8.26□□□□□ -1.09
CD44-233ENST00000531141 HOXA2O43364 376 aa8.25□□□□□ -1.09
CD44-233ENST00000531141 GJA5P36382 358 aa8.25□□□□□ -1.09
CD44-233ENST00000531141 APLP1P51693 650 aa8.25□□□□□ -1.09
CD44-233ENST00000531141 CLK2P49760 499 aaKnown RBP8.24□□□□□ -1.09
CD44-233ENST00000531141 FUT2Q10981 343 aa8.24□□□□□ -1.09
CD44-233ENST00000531141 SKIV2LQ15477 1246 aaKnown RBP8.23□□□□□ -1.09
CD44-233ENST00000531141 RSBN1LQ6PCB5 846 aaPredicted RBP8.23□□□□□ -1.09
CD44-233ENST00000531141 SPTLC1O15269 473 aa8.22□□□□□ -1.09
CD44-233ENST00000531141 ATP6V1AP38606 617 aa8.22□□□□□ -1.09
CD44-233ENST00000531141 PTPN5P54829 565 aa8.22□□□□□ -1.09
CD44-233ENST00000531141 PCMTD1Q96MG8 357 aaPredicted RBP8.22□□□□□ -1.09
CD44-233ENST00000531141 PCDHB3Q9Y5E6 796 aa8.22□□□□□ -1.09
CD44-233ENST00000531141 MOXD2PA6NHM9 499 aa8.21□□□□□ -1.1
CD44-233ENST00000531141 TUSC1Q2TAM9 212 aa8.21□□□□□ -1.1
CD44-233ENST00000531141 RIC3Q7Z5B4 369 aa8.2□□□□□ -1.1
CD44-233ENST00000531141 FDX1P10109 184 aa8.19□□□□□ -1.1
CD44-233ENST00000531141 MORN1Q5T089 497 aa8.19□□□□□ -1.1
CD44-233ENST00000531141 LIMD1Q9UGP4 676 aa8.19□□□□□ -1.1
CD44-233ENST00000531141 NR1I2O75469 434 aa8.18□□□□□ -1.1
CD44-233ENST00000531141 NDUFV2P19404 249 aa8.18□□□□□ -1.1
CD44-233ENST00000531141 POLR3EQ9NVU0 708 aa8.18□□□□□ -1.1
CD44-233ENST00000531141 Q3C1V9 767 aa8.17□□□□□ -1.1
CD44-233ENST00000531141 PUS10Q3MIT2 529 aaKnown RBP8.17□□□□□ -1.1
CD44-233ENST00000531141 BLOC1S3Q6QNY0 202 aa8.17□□□□□ -1.1
CD44-233ENST00000531141 HLA-CQ95604 372 aa8.17□□□□□ -1.1
CD44-233ENST00000531141 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.17□□□□□ -1.1
CD44-233ENST00000531141 GUCA2AQ02747 115 aa8.16□□□□□ -1.1
CD44-233ENST00000531141 PRPF38BQ5VTL8 546 aaKnown RBP8.16□□□□□ -1.1
CD44-233ENST00000531141 MTRQ99707 1265 aa8.15□□□□□ -1.1
CD44-233ENST00000531141 ZBTB3Q9H5J0 574 aa8.15□□□□□ -1.1
CD44-233ENST00000531141 SLC27A5Q9Y2P5 690 aa8.15□□□□□ -1.1
CD44-233ENST00000531141 IL21Q9HBE4 155 aa8.14□□□□□ -1.11
CD44-233ENST00000531141 ATP1B4Q9UN42 357 aaPredicted RBP8.14□□□□□ -1.11
CD44-233ENST00000531141 PCDHGC3Q9UN70 934 aa8.14□□□□□ -1.11
CD44-233ENST00000531141 SALL2Q9Y467 1007 aaPredicted RBP8.14□□□□□ -1.11
CD44-233ENST00000531141 SPDYE5A6NIY4 337 aa8.13□□□□□ -1.11
CD44-233ENST00000531141 LILRB3O75022 631 aa8.13□□□□□ -1.11
CD44-233ENST00000531141 COPS2P61201 443 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms