RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 MED14O60244 1454 aa31.21■■■□□ 2.59
CAPN1-220ENST00000530567 TXNDC2Q86VQ3 553 aa31.19■■■□□ 2.58
CAPN1-220ENST00000530567 ZNF326Q5BKZ1 582 aaKnown RBP31.16■■■□□ 2.58
CAPN1-220ENST00000530567 EID1Q9Y6B2 187 aa31.15■■■□□ 2.58
CAPN1-220ENST00000530567 PPLO60437 1756 aa31.15■■■□□ 2.58
CAPN1-220ENST00000530567 IFT172Q9UG01 1749 aa31.14■■■□□ 2.58
CAPN1-220ENST00000530567 NPHP4O75161 1426 aaPredicted RBP31.14■■■□□ 2.58
CAPN1-220ENST00000530567 IQGAP1P46940 1657 aa31.14■■■□□ 2.58
CAPN1-220ENST00000530567 RGL3Q3MIN7 710 aa31.12■■■□□ 2.57
CAPN1-220ENST00000530567 NUTM2DQ5VT03 806 aaPredicted RBP31.11■■■□□ 2.57
CAPN1-220ENST00000530567 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.11■■■□□ 2.57
CAPN1-220ENST00000530567 RPGRIP1LQ68CZ1 1315 aa31.11■■■□□ 2.57
CAPN1-220ENST00000530567 SIN3AQ96ST3 1273 aa31.1■■■□□ 2.57
CAPN1-220ENST00000530567 PLEKHG1Q9ULL1 1385 aa31.09■■■□□ 2.57
CAPN1-220ENST00000530567 HDGFP51858 240 aaKnown RBP31.08■■■□□ 2.57
CAPN1-220ENST00000530567 DMRT2Q9Y5R5 561 aa31.07■■■□□ 2.57
CAPN1-220ENST00000530567 PPP1R15AO75807 674 aaPredicted RBP31.07■■■□□ 2.56
CAPN1-220ENST00000530567 NRXN3Q9Y4C0 1643 aa31.04■■■□□ 2.56
CAPN1-220ENST00000530567 SETBP1Q9Y6X0 1596 aa31.02■■■□□ 2.56
CAPN1-220ENST00000530567 MYOM2P54296 1465 aa31.01■■■□□ 2.55
CAPN1-220ENST00000530567 ADAMTS13Q76LX8 1427 aa31.01■■■□□ 2.55
CAPN1-220ENST00000530567 VGFO15240 615 aaPredicted RBP30.98■■■□□ 2.55
CAPN1-220ENST00000530567 NEUROD1Q13562 356 aa30.98■■■□□ 2.55
CAPN1-220ENST00000530567 SENP3Q9H4L4 574 aaPredicted RBP30.98■■■□□ 2.55
CAPN1-220ENST00000530567 ADGRF5Q8IZF2 1346 aa30.98■■■□□ 2.55
CAPN1-220ENST00000530567 CLSPNQ9HAW4 1339 aa30.98■■■□□ 2.55
CAPN1-220ENST00000530567 NRXN1Q9ULB1 1477 aa30.98■■■□□ 2.55
CAPN1-220ENST00000530567 DIP2AQ14689 1571 aa30.95■■■□□ 2.55
CAPN1-220ENST00000530567 SLC26A8Q96RN1 970 aa30.95■■■□□ 2.54
CAPN1-220ENST00000530567 PIK3C2GO75747 1445 aa30.93■■■□□ 2.54
CAPN1-220ENST00000530567 CCER1Q8TC90 406 aaPredicted RBP30.93■■■□□ 2.54
CAPN1-220ENST00000530567 SETD1AO15047 1707 aaKnown RBP30.92■■■□□ 2.54
CAPN1-220ENST00000530567 DCAF11Q8TEB1 546 aa30.92■■■□□ 2.54
CAPN1-220ENST00000530567 BCANQ96GW7 911 aa30.91■■■□□ 2.54
CAPN1-220ENST00000530567 L3MBTL2Q969R5 705 aa30.9■■■□□ 2.54
CAPN1-220ENST00000530567 TBX22Q9Y458 520 aa30.9■■■□□ 2.54
CAPN1-220ENST00000530567 ALKQ9UM73 1620 aa30.89■■■□□ 2.54
CAPN1-220ENST00000530567 ZNF335Q9H4Z2 1342 aaPredicted RBP30.87■■■□□ 2.53
CAPN1-220ENST00000530567 KDM2AQ9Y2K7 1162 aa30.87■■■□□ 2.53
CAPN1-220ENST00000530567 STRCP1A6NGW2 1772 aa30.86■■■□□ 2.53
CAPN1-220ENST00000530567 STAC3Q96MF2 364 aa30.85■■■□□ 2.53
CAPN1-220ENST00000530567 LTBP4Q8N2S1 1624 aa30.85■■■□□ 2.53
CAPN1-220ENST00000530567 METP08581 1390 aa30.83■■■□□ 2.53
CAPN1-220ENST00000530567 NWD1Q149M9 1564 aa30.83■■■□□ 2.53
CAPN1-220ENST00000530567 TONSLQ96HA7 1378 aa30.81■■■□□ 2.52
CAPN1-220ENST00000530567 ASXL1Q8IXJ9 1541 aa30.81■■■□□ 2.52
CAPN1-220ENST00000530567 CHD2O14647 1828 aaKnown RBP30.81■■■□□ 2.52
CAPN1-220ENST00000530567 PIK3R4Q99570 1358 aa30.81■■■□□ 2.52
CAPN1-220ENST00000530567 LAMC1P11047 1609 aa30.8■■■□□ 2.52
CAPN1-220ENST00000530567 PRAG1Q86YV5 1406 aa30.8■■■□□ 2.52
CAPN1-220ENST00000530567 PTPRUQ92729 1446 aa30.8■■■□□ 2.52
CAPN1-220ENST00000530567 C14orf93Q9H972 538 aaKnown RBP30.77■■■□□ 2.52
CAPN1-220ENST00000530567 XRN1Q8IZH2 1706 aaKnown RBP30.76■■■□□ 2.51
CAPN1-220ENST00000530567 KCNA6P17658 529 aa30.75■■■□□ 2.51
CAPN1-220ENST00000530567 CFAP70Q5T0N1 1121 aa30.75■■■□□ 2.51
CAPN1-220ENST00000530567 CPS1P31327 1500 aa30.74■■■□□ 2.51
CAPN1-220ENST00000530567 ADGRB1O14514 1584 aa30.72■■■□□ 2.51
CAPN1-220ENST00000530567 NKTRP30414 1462 aaKnown RBP30.71■■■□□ 2.51
CAPN1-220ENST00000530567 KIAA1210Q9ULL0 1709 aa30.71■■■□□ 2.51
CAPN1-220ENST00000530567 TMEM132EQ6IEE7 984 aa30.67■■■□□ 2.5
CAPN1-220ENST00000530567 AMOTL2Q9Y2J4 779 aa30.67■■■□□ 2.5
CAPN1-220ENST00000530567 LRRC7Q96NW7 1537 aa30.67■■■□□ 2.5
CAPN1-220ENST00000530567 TIMELESSQ9UNS1 1208 aa30.66■■■□□ 2.5
CAPN1-220ENST00000530567 TRPM1Q7Z4N2 1603 aa30.66■■■□□ 2.5
CAPN1-220ENST00000530567 NBPF8Q3BBV2 869 aa30.65■■■□□ 2.5
CAPN1-220ENST00000530567 LRPPRCP42704 1394 aaKnown RBP30.64■■■□□ 2.5
CAPN1-220ENST00000530567 KNDC1Q76NI1 1749 aa30.63■■■□□ 2.49
CAPN1-220ENST00000530567 TECPR2O15040 1411 aa30.63■■■□□ 2.49
CAPN1-220ENST00000530567 YTHDC2Q9H6S0 1430 aaKnown RBP30.63■■■□□ 2.49
CAPN1-220ENST00000530567 XIRP1Q702N8 1843 aaKnown RBP30.62■■■□□ 2.49
CAPN1-220ENST00000530567 PTCH1Q13635 1447 aa30.61■■■□□ 2.49
CAPN1-220ENST00000530567 NBPF1Q3BBV0 1214 aa30.59■■■□□ 2.49
CAPN1-220ENST00000530567 ABCC11Q96J66 1382 aa30.59■■■□□ 2.49
CAPN1-220ENST00000530567 ROBO2Q9HCK4 1378 aa30.59■■■□□ 2.49
CAPN1-220ENST00000530567 TMEM94Q12767 1356 aa30.57■■■□□ 2.48
CAPN1-220ENST00000530567 CERKQ8TCT0 537 aa30.56■■■□□ 2.48
CAPN1-220ENST00000530567 RALGAPBQ86X10 1494 aa30.56■■■□□ 2.48
CAPN1-220ENST00000530567 PROSER2Q86WR7 435 aaPredicted RBP30.56■■■□□ 2.48
CAPN1-220ENST00000530567 STK26Q9P289 416 aa30.56■■■□□ 2.48
CAPN1-220ENST00000530567 IQSEC2Q5JU85 1478 aa30.55■■■□□ 2.48
CAPN1-220ENST00000530567 RBM33Q96EV2 1170 aaKnown RBP30.55■■■□□ 2.48
CAPN1-220ENST00000530567 DLC1Q96QB1 1528 aa30.54■■■□□ 2.48
CAPN1-220ENST00000530567 GPRASP1Q5JY77 1395 aa30.52■■■□□ 2.48
CAPN1-220ENST00000530567 FAM135BQ49AJ0 1406 aa30.49■■■□□ 2.47
CAPN1-220ENST00000530567 NCOA3Q9Y6Q9 1424 aa30.49■■■□□ 2.47
CAPN1-220ENST00000530567 ROCK2O75116 1388 aaKnown RBP30.49■■■□□ 2.47
CAPN1-220ENST00000530567 ARHGEF28Q8N1W1 1705 aaKnown RBP30.49■■■□□ 2.47
CAPN1-220ENST00000530567 PLEKHH1Q9ULM0 1364 aa30.47■■■□□ 2.47
CAPN1-220ENST00000530567 SIRT1Q96EB6 747 aa30.47■■■□□ 2.47
CAPN1-220ENST00000530567 TRAK1Q9UPV9 953 aa30.47■■■□□ 2.47
CAPN1-220ENST00000530567 NALCNQ8IZF0 1738 aa30.46■■■□□ 2.47
CAPN1-220ENST00000530567 WAPLQ7Z5K2 1190 aa30.45■■■□□ 2.46
CAPN1-220ENST00000530567 ADGRL3Q9HAR2 1447 aa30.43■■■□□ 2.46
CAPN1-220ENST00000530567 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.42■■■□□ 2.46
CAPN1-220ENST00000530567 PRAM1Q96QH2 718 aa30.4■■■□□ 2.46
CAPN1-220ENST00000530567 MSH6P52701 1360 aa30.38■■■□□ 2.45
CAPN1-220ENST00000530567 C14orf37Q86TY3 774 aa30.36■■■□□ 2.45
CAPN1-220ENST00000530567 CARD11Q9BXL7 1154 aa30.36■■■□□ 2.45
CAPN1-220ENST00000530567 C19orf44Q9H6X5 657 aa30.36■■■□□ 2.45
CAPN1-220ENST00000530567 DCCP43146 1447 aa30.35■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms