RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 RBM33Q96EV2 1170 aaKnown RBP18.61■□□□□ 0.57
USH1C-208ENST00000529563 TET3O43151 1660 aa18.59■□□□□ 0.57
USH1C-208ENST00000529563 XIRP1Q702N8 1843 aaKnown RBP18.58■□□□□ 0.56
USH1C-208ENST00000529563 MSH6P52701 1360 aa18.57■□□□□ 0.56
USH1C-208ENST00000529563 C14orf37Q86TY3 774 aa18.57■□□□□ 0.56
USH1C-208ENST00000529563 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.57■□□□□ 0.56
USH1C-208ENST00000529563 RIMS2Q9UQ26 1411 aa18.57■□□□□ 0.56
USH1C-208ENST00000529563 FAM135BQ49AJ0 1406 aa18.56■□□□□ 0.56
USH1C-208ENST00000529563 GCC2Q8IWJ2 1684 aa18.55■□□□□ 0.56
USH1C-208ENST00000529563 NKTRP30414 1462 aaKnown RBP18.55■□□□□ 0.56
USH1C-208ENST00000529563 PLEKHG1Q9ULL1 1385 aa18.55■□□□□ 0.56
USH1C-208ENST00000529563 NUTM2DQ5VT03 806 aaPredicted RBP18.54■□□□□ 0.56
USH1C-208ENST00000529563 PPARGC1BQ86YN6 1023 aaKnown RBP18.54■□□□□ 0.56
USH1C-208ENST00000529563 UNC13BO14795 1591 aa18.54■□□□□ 0.56
USH1C-208ENST00000529563 ROCK1Q13464 1354 aa18.54■□□□□ 0.56
USH1C-208ENST00000529563 NUP155O75694 1391 aa18.53■□□□□ 0.56
USH1C-208ENST00000529563 MYO5BQ9ULV0 1848 aa18.52■□□□□ 0.56
USH1C-208ENST00000529563 ZFYVE9O95405 1425 aa18.51■□□□□ 0.55
USH1C-208ENST00000529563 NWD1Q149M9 1564 aa18.51■□□□□ 0.55
USH1C-208ENST00000529563 ROBO1Q9Y6N7 1651 aa18.5■□□□□ 0.55
USH1C-208ENST00000529563 TMEM131LA2VDJ0 1609 aa18.5■□□□□ 0.55
USH1C-208ENST00000529563 SLAIN2Q9P270 581 aa18.5■□□□□ 0.55
USH1C-208ENST00000529563 E9PCH4 1651 aa18.48■□□□□ 0.55
USH1C-208ENST00000529563 TBX22Q9Y458 520 aa18.48■□□□□ 0.55
USH1C-208ENST00000529563 IQGAP3Q86VI3 1631 aa18.47■□□□□ 0.55
USH1C-208ENST00000529563 ZNF326Q5BKZ1 582 aaKnown RBP18.46■□□□□ 0.55
USH1C-208ENST00000529563 CHD2O14647 1828 aaKnown RBP18.45■□□□□ 0.54
USH1C-208ENST00000529563 ATF3P18847 181 aa18.45■□□□□ 0.54
USH1C-208ENST00000529563 PHLPP1O60346 1717 aa18.43■□□□□ 0.54
USH1C-208ENST00000529563 DIP2AQ14689 1571 aa18.42■□□□□ 0.54
USH1C-208ENST00000529563 CADPS2Q86UW7 1296 aa18.41■□□□□ 0.54
USH1C-208ENST00000529563 RGS17Q9UGC6 210 aaPredicted RBP18.41■□□□□ 0.54
USH1C-208ENST00000529563 PIK3R4Q99570 1358 aa18.41■□□□□ 0.54
USH1C-208ENST00000529563 JCADQ9P266 1359 aa18.41■□□□□ 0.54
USH1C-208ENST00000529563 NCOA3Q9Y6Q9 1424 aa18.4■□□□□ 0.54
USH1C-208ENST00000529563 TRPM2O94759 1503 aa18.4■□□□□ 0.54
USH1C-208ENST00000529563 MEX3CQ5U5Q3 659 aaKnown RBP18.4■□□□□ 0.54
USH1C-208ENST00000529563 C19orf44Q9H6X5 657 aa18.4■□□□□ 0.54
USH1C-208ENST00000529563 AMOTL2Q9Y2J4 779 aa18.4■□□□□ 0.54
USH1C-208ENST00000529563 ADAMTS13Q76LX8 1427 aa18.4■□□□□ 0.54
USH1C-208ENST00000529563 POTEAQ6S8J7 498 aa18.36■□□□□ 0.53
USH1C-208ENST00000529563 SPHKAPQ2M3C7 1700 aa18.35■□□□□ 0.53
USH1C-208ENST00000529563 TRIM52Q96A61 297 aa18.34■□□□□ 0.53
USH1C-208ENST00000529563 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.33■□□□□ 0.52
USH1C-208ENST00000529563 SPATA31A6Q5VVP1 1343 aa18.31■□□□□ 0.52
USH1C-208ENST00000529563 PTPRUQ92729 1446 aa18.3■□□□□ 0.52
USH1C-208ENST00000529563 COL16A1Q07092 1604 aaPredicted RBP18.3■□□□□ 0.52
USH1C-208ENST00000529563 NUTM2BA6NNL0 878 aaPredicted RBP18.28■□□□□ 0.52
USH1C-208ENST00000529563 NUTM2EB1AL46 878 aaPredicted RBP18.28■□□□□ 0.52
USH1C-208ENST00000529563 BRINP3Q76B58 766 aa18.28■□□□□ 0.52
USH1C-208ENST00000529563 NUTM2AQ8IVF1 878 aaPredicted RBP18.28■□□□□ 0.52
USH1C-208ENST00000529563 SETBP1Q9Y6X0 1596 aa18.28■□□□□ 0.52
USH1C-208ENST00000529563 ZNF772Q68DY9 489 aaPredicted RBP18.27■□□□□ 0.52
USH1C-208ENST00000529563 AHDC1Q5TGY3 1603 aaPredicted RBP18.27■□□□□ 0.51
USH1C-208ENST00000529563 DCCP43146 1447 aa18.26■□□□□ 0.51
USH1C-208ENST00000529563 RRBP1Q9P2E9 1410 aaKnown RBP18.26■□□□□ 0.51
USH1C-208ENST00000529563 METP08581 1390 aa18.26■□□□□ 0.51
USH1C-208ENST00000529563 CLTCL1P53675 1640 aa18.26■□□□□ 0.51
USH1C-208ENST00000529563 KIF1BO60333 1816 aa18.25■□□□□ 0.51
USH1C-208ENST00000529563 NAIPQ13075 1403 aa18.24■□□□□ 0.51
USH1C-208ENST00000529563 NRXN3Q9Y4C0 1643 aa18.24■□□□□ 0.51
USH1C-208ENST00000529563 VGFO15240 615 aaPredicted RBP18.24■□□□□ 0.51
USH1C-208ENST00000529563 SLC4A1APQ9BWU0 796 aaKnown RBP18.24■□□□□ 0.51
USH1C-208ENST00000529563 XRN1Q8IZH2 1706 aaKnown RBP18.23■□□□□ 0.51
USH1C-208ENST00000529563 LRP6O75581 1613 aa18.22■□□□□ 0.51
USH1C-208ENST00000529563 NEXMIFQ5QGS0 1516 aa18.22■□□□□ 0.51
USH1C-208ENST00000529563 ASXL1Q8IXJ9 1541 aa18.22■□□□□ 0.51
USH1C-208ENST00000529563 SHPRHQ149N8 1683 aa18.22■□□□□ 0.51
USH1C-208ENST00000529563 LRRC59Q96AG4 307 aaKnown RBP18.21■□□□□ 0.51
USH1C-208ENST00000529563 MST1RQ04912 1400 aa18.2■□□□□ 0.5
USH1C-208ENST00000529563 ADGRL3Q9HAR2 1447 aa18.2■□□□□ 0.5
USH1C-208ENST00000529563 SETD1AO15047 1707 aaKnown RBP18.19■□□□□ 0.5
USH1C-208ENST00000529563 HFM1A2PYH4 1435 aa18.17■□□□□ 0.5
USH1C-208ENST00000529563 RXRBP28702 533 aa18.17■□□□□ 0.5
USH1C-208ENST00000529563 RPGRIP1LQ68CZ1 1315 aa18.17■□□□□ 0.5
USH1C-208ENST00000529563 DDX17Q92841 729 aaKnown RBP18.16■□□□□ 0.5
USH1C-208ENST00000529563 C8orf37Q96NL8 207 aa18.15■□□□□ 0.5
USH1C-208ENST00000529563 AFF2P51816 1311 aa18.15■□□□□ 0.5
USH1C-208ENST00000529563 SETD5Q9C0A6 1442 aa18.15■□□□□ 0.5
USH1C-208ENST00000529563 NALCNQ8IZF0 1738 aa18.14■□□□□ 0.49
USH1C-208ENST00000529563 NHSL1Q5SYE7 1610 aa18.13■□□□□ 0.49
USH1C-208ENST00000529563 PTCH1Q13635 1447 aa18.13■□□□□ 0.49
USH1C-208ENST00000529563 FOXD1Q16676 465 aa18.12■□□□□ 0.49
USH1C-208ENST00000529563 RGL3Q3MIN7 710 aa18.11■□□□□ 0.49
USH1C-208ENST00000529563 ROBO2Q9HCK4 1378 aa18.11■□□□□ 0.49
USH1C-208ENST00000529563 C1orf167Q5SNV9 1468 aa18.11■□□□□ 0.49
USH1C-208ENST00000529563 CCDC144AA2RUR9 1427 aa18.1■□□□□ 0.49
USH1C-208ENST00000529563 ADAMTS2O95450 1211 aa18.1■□□□□ 0.49
USH1C-208ENST00000529563 PNPLA6Q8IY17 1366 aa18.09■□□□□ 0.49
USH1C-208ENST00000529563 NGLY1Q96IV0 654 aa18.09■□□□□ 0.49
USH1C-208ENST00000529563 ORAI2Q96SN7 254 aa18.09■□□□□ 0.49
USH1C-208ENST00000529563 STK26Q9P289 416 aa18.08■□□□□ 0.48
USH1C-208ENST00000529563 QTRT2Q9H974 415 aaKnown RBP18.07■□□□□ 0.48
USH1C-208ENST00000529563 PPLO60437 1756 aa18.07■□□□□ 0.48
USH1C-208ENST00000529563 ESCO1Q5FWF5 840 aa18.06■□□□□ 0.48
USH1C-208ENST00000529563 UPF1Q92900 1129 aaKnown RBP eCLIP18.06■□□□□ 0.48
USH1C-208ENST00000529563 RBM6P78332 1123 aaKnown RBP18.04■□□□□ 0.48
USH1C-208ENST00000529563 MPHOSPH9Q99550 1183 aa18.04■□□□□ 0.48
USH1C-208ENST00000529563 ADGRF5Q8IZF2 1346 aa18.03■□□□□ 0.48
USH1C-208ENST00000529563 CDK12Q9NYV4 1490 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms