RNA–Protein interactions for RNA: ENST00000528364.1

CLNS1A-210, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

APPRIS P1 TSL 3 BASIC

Gene CLNS1A, Length 953 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-210ENST00000528364 TMEM94Q12767 1356 aa23.81■■□□□ 1.4
CLNS1A-210ENST00000528364 MED1Q15648 1581 aaPredicted RBP23.8■■□□□ 1.4
CLNS1A-210ENST00000528364 NUTM2DQ5VT03 806 aaPredicted RBP23.8■■□□□ 1.4
CLNS1A-210ENST00000528364 MYO5BQ9ULV0 1848 aa23.8■■□□□ 1.4
CLNS1A-210ENST00000528364 UNC13BO14795 1591 aa23.78■■□□□ 1.4
CLNS1A-210ENST00000528364 RIMS2Q9UQ26 1411 aa23.78■■□□□ 1.4
CLNS1A-210ENST00000528364 NUP155O75694 1391 aa23.78■■□□□ 1.4
CLNS1A-210ENST00000528364 ZFYVE9O95405 1425 aa23.77■■□□□ 1.4
CLNS1A-210ENST00000528364 PPP1R15AO75807 674 aaPredicted RBP23.77■■□□□ 1.4
CLNS1A-210ENST00000528364 E9PCH4 1651 aa23.75■■□□□ 1.39
CLNS1A-210ENST00000528364 GCC2Q8IWJ2 1684 aa23.75■■□□□ 1.39
CLNS1A-210ENST00000528364 TMEM131LA2VDJ0 1609 aa23.74■■□□□ 1.39
CLNS1A-210ENST00000528364 HDGFP51858 240 aaKnown RBP23.74■■□□□ 1.39
CLNS1A-210ENST00000528364 PLEKHG1Q9ULL1 1385 aa23.73■■□□□ 1.39
CLNS1A-210ENST00000528364 PHF23Q9BUL5 403 aaPredicted RBP23.7■■□□□ 1.38
CLNS1A-210ENST00000528364 IQGAP3Q86VI3 1631 aa23.7■■□□□ 1.38
CLNS1A-210ENST00000528364 FAM135BQ49AJ0 1406 aa23.69■■□□□ 1.38
CLNS1A-210ENST00000528364 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.69■■□□□ 1.38
CLNS1A-210ENST00000528364 TBX22Q9Y458 520 aa23.69■■□□□ 1.38
CLNS1A-210ENST00000528364 NWD1Q149M9 1564 aa23.65■■□□□ 1.38
CLNS1A-210ENST00000528364 CHD2O14647 1828 aaKnown RBP23.64■■□□□ 1.38
CLNS1A-210ENST00000528364 NKTRP30414 1462 aaKnown RBP23.64■■□□□ 1.38
CLNS1A-210ENST00000528364 ADAMTS13Q76LX8 1427 aa23.64■■□□□ 1.37
CLNS1A-210ENST00000528364 SLAIN2Q9P270 581 aa23.63■■□□□ 1.37
CLNS1A-210ENST00000528364 MSH6P52701 1360 aa23.63■■□□□ 1.37
CLNS1A-210ENST00000528364 RGS17Q9UGC6 210 aaPredicted RBP23.61■■□□□ 1.37
CLNS1A-210ENST00000528364 ROBO1Q9Y6N7 1651 aa23.59■■□□□ 1.37
CLNS1A-210ENST00000528364 RRBP1Q9P2E9 1410 aaKnown RBP23.59■■□□□ 1.37
CLNS1A-210ENST00000528364 C14orf37Q86TY3 774 aa23.58■■□□□ 1.37
CLNS1A-210ENST00000528364 ZNF326Q5BKZ1 582 aaKnown RBP23.57■■□□□ 1.36
CLNS1A-210ENST00000528364 AMOTL2Q9Y2J4 779 aa23.57■■□□□ 1.36
CLNS1A-210ENST00000528364 PTPRUQ92729 1446 aa23.55■■□□□ 1.36
CLNS1A-210ENST00000528364 NAIPQ13075 1403 aa23.54■■□□□ 1.36
CLNS1A-210ENST00000528364 TRIM52Q96A61 297 aa23.52■■□□□ 1.36
CLNS1A-210ENST00000528364 PIK3R4Q99570 1358 aa23.52■■□□□ 1.36
CLNS1A-210ENST00000528364 SPHKAPQ2M3C7 1700 aa23.51■■□□□ 1.35
CLNS1A-210ENST00000528364 C19orf44Q9H6X5 657 aa23.51■■□□□ 1.35
CLNS1A-210ENST00000528364 NCOA3Q9Y6Q9 1424 aa23.5■■□□□ 1.35
CLNS1A-210ENST00000528364 DIP2AQ14689 1571 aa23.48■■□□□ 1.35
CLNS1A-210ENST00000528364 ATF3P18847 181 aa23.48■■□□□ 1.35
CLNS1A-210ENST00000528364 POTEAQ6S8J7 498 aa23.47■■□□□ 1.35
CLNS1A-210ENST00000528364 CADPS2Q86UW7 1296 aa23.47■■□□□ 1.35
CLNS1A-210ENST00000528364 TRPM2O94759 1503 aa23.47■■□□□ 1.35
CLNS1A-210ENST00000528364 METP08581 1390 aa23.46■■□□□ 1.35
CLNS1A-210ENST00000528364 PHLPP1O60346 1717 aa23.45■■□□□ 1.34
CLNS1A-210ENST00000528364 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.45■■□□□ 1.34
CLNS1A-210ENST00000528364 CLTCL1P53675 1640 aa23.45■■□□□ 1.34
CLNS1A-210ENST00000528364 NRXN3Q9Y4C0 1643 aa23.45■■□□□ 1.34
CLNS1A-210ENST00000528364 JCADQ9P266 1359 aa23.41■■□□□ 1.34
CLNS1A-210ENST00000528364 SETBP1Q9Y6X0 1596 aa23.41■■□□□ 1.34
CLNS1A-210ENST00000528364 SLC4A1APQ9BWU0 796 aaKnown RBP23.41■■□□□ 1.34
CLNS1A-210ENST00000528364 HFM1A2PYH4 1435 aa23.41■■□□□ 1.34
CLNS1A-210ENST00000528364 NEXMIFQ5QGS0 1516 aa23.39■■□□□ 1.34
CLNS1A-210ENST00000528364 FOXD1Q16676 465 aa23.39■■□□□ 1.33
CLNS1A-210ENST00000528364 BRINP3Q76B58 766 aa23.39■■□□□ 1.33
CLNS1A-210ENST00000528364 COL16A1Q07092 1604 aaPredicted RBP23.37■■□□□ 1.33
CLNS1A-210ENST00000528364 XRN1Q8IZH2 1706 aaKnown RBP23.36■■□□□ 1.33
CLNS1A-210ENST00000528364 KIF1BO60333 1816 aa23.36■■□□□ 1.33
CLNS1A-210ENST00000528364 VGFO15240 615 aaPredicted RBP23.33■■□□□ 1.33
CLNS1A-210ENST00000528364 DDX17Q92841 729 aaKnown RBP23.32■■□□□ 1.32
CLNS1A-210ENST00000528364 MST1RQ04912 1400 aa23.31■■□□□ 1.32
CLNS1A-210ENST00000528364 LRP6O75581 1613 aa23.3■■□□□ 1.32
CLNS1A-210ENST00000528364 AHDC1Q5TGY3 1603 aaPredicted RBP23.3■■□□□ 1.32
CLNS1A-210ENST00000528364 DCCP43146 1447 aa23.29■■□□□ 1.32
CLNS1A-210ENST00000528364 SPATA31A6Q5VVP1 1343 aa23.29■■□□□ 1.32
CLNS1A-210ENST00000528364 RPGRIP1LQ68CZ1 1315 aa23.29■■□□□ 1.32
CLNS1A-210ENST00000528364 NUTM2BA6NNL0 878 aaPredicted RBP23.28■■□□□ 1.32
CLNS1A-210ENST00000528364 NUTM2EB1AL46 878 aaPredicted RBP23.28■■□□□ 1.32
CLNS1A-210ENST00000528364 MEX3CQ5U5Q3 659 aaKnown RBP23.28■■□□□ 1.32
CLNS1A-210ENST00000528364 NUTM2AQ8IVF1 878 aaPredicted RBP23.28■■□□□ 1.32
CLNS1A-210ENST00000528364 ADGRL3Q9HAR2 1447 aa23.26■■□□□ 1.31
CLNS1A-210ENST00000528364 ROBO2Q9HCK4 1378 aa23.26■■□□□ 1.31
CLNS1A-210ENST00000528364 ASXL1Q8IXJ9 1541 aa23.25■■□□□ 1.31
CLNS1A-210ENST00000528364 RGL3Q3MIN7 710 aa23.25■■□□□ 1.31
CLNS1A-210ENST00000528364 MPHOSPH9Q99550 1183 aa23.25■■□□□ 1.31
CLNS1A-210ENST00000528364 ADGRF5Q8IZF2 1346 aa23.23■■□□□ 1.31
CLNS1A-210ENST00000528364 SETD1AO15047 1707 aaKnown RBP23.22■■□□□ 1.31
CLNS1A-210ENST00000528364 NALCNQ8IZF0 1738 aa23.21■■□□□ 1.31
CLNS1A-210ENST00000528364 SHPRHQ149N8 1683 aa23.2■■□□□ 1.3
CLNS1A-210ENST00000528364 LRRC59Q96AG4 307 aaKnown RBP23.2■■□□□ 1.3
CLNS1A-210ENST00000528364 ORAI2Q96SN7 254 aa23.2■■□□□ 1.3
CLNS1A-210ENST00000528364 PPLO60437 1756 aa23.19■■□□□ 1.3
CLNS1A-210ENST00000528364 SETD5Q9C0A6 1442 aa23.19■■□□□ 1.3
CLNS1A-210ENST00000528364 C1orf167Q5SNV9 1468 aa23.18■■□□□ 1.3
CLNS1A-210ENST00000528364 ZNF772Q68DY9 489 aaPredicted RBP23.18■■□□□ 1.3
CLNS1A-210ENST00000528364 PTCH1Q13635 1447 aa23.17■■□□□ 1.3
CLNS1A-210ENST00000528364 CCDC144AA2RUR9 1427 aa23.16■■□□□ 1.3
CLNS1A-210ENST00000528364 NHSL1Q5SYE7 1610 aa23.16■■□□□ 1.3
CLNS1A-210ENST00000528364 STK26Q9P289 416 aa23.16■■□□□ 1.3
CLNS1A-210ENST00000528364 SPATA31E1Q6ZUB1 1445 aa23.15■■□□□ 1.3
CLNS1A-210ENST00000528364 TMEM132EQ6IEE7 984 aa23.14■■□□□ 1.29
CLNS1A-210ENST00000528364 WAPLQ7Z5K2 1190 aa23.13■■□□□ 1.29
CLNS1A-210ENST00000528364 PNPLA6Q8IY17 1366 aa23.13■■□□□ 1.29
CLNS1A-210ENST00000528364 AFF2P51816 1311 aa23.12■■□□□ 1.29
CLNS1A-210ENST00000528364 RXRBP28702 533 aa23.1■■□□□ 1.29
CLNS1A-210ENST00000528364 C8orf37Q96NL8 207 aa23.1■■□□□ 1.29
CLNS1A-210ENST00000528364 PRAG1Q86YV5 1406 aa23.09■■□□□ 1.29
CLNS1A-210ENST00000528364 SOS2Q07890 1332 aaPredicted RBP23.08■■□□□ 1.29
CLNS1A-210ENST00000528364 NUTM2FA1L443 756 aa23.08■■□□□ 1.29
CLNS1A-210ENST00000528364 ADAMTS2O95450 1211 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms