RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 HDGFP51858 240 aaKnown RBP16.43■□□□□ 0.22
CPSF1-203ENST00000527916 TRIM52Q96A61 297 aa16.43■□□□□ 0.22
CPSF1-203ENST00000527916 LMTK2Q8IWU2 1503 aa16.43■□□□□ 0.22
CPSF1-203ENST00000527916 FGD6Q6ZV73 1430 aa16.43■□□□□ 0.22
CPSF1-203ENST00000527916 SRCAPQ6ZRS2 3230 aa16.42■□□□□ 0.22
CPSF1-203ENST00000527916 ADGRB3O60242 1522 aa16.42■□□□□ 0.22
CPSF1-203ENST00000527916 C14orf37Q86TY3 774 aa16.42■□□□□ 0.22
CPSF1-203ENST00000527916 ABCC5O15440 1437 aa16.42■□□□□ 0.22
CPSF1-203ENST00000527916 PPP1R15AO75807 674 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-203ENST00000527916 NOS1P29475 1434 aa16.4■□□□□ 0.22
CPSF1-203ENST00000527916 NCOA3Q9Y6Q9 1424 aa16.4■□□□□ 0.22
CPSF1-203ENST00000527916 COL16A1Q07092 1604 aaPredicted RBP16.4■□□□□ 0.22
CPSF1-203ENST00000527916 CROCC2H7BZ55 1655 aa16.4■□□□□ 0.22
CPSF1-203ENST00000527916 RXRBP28702 533 aa16.39■□□□□ 0.21
CPSF1-203ENST00000527916 CADPS2Q86UW7 1296 aa16.39■□□□□ 0.21
CPSF1-203ENST00000527916 ANKRD30AQ9BXX3 1397 aa16.38■□□□□ 0.21
CPSF1-203ENST00000527916 PLEKHG1Q9ULL1 1385 aa16.38■□□□□ 0.21
CPSF1-203ENST00000527916 ATF3P18847 181 aa16.38■□□□□ 0.21
CPSF1-203ENST00000527916 CHD2O14647 1828 aaKnown RBP16.38■□□□□ 0.21
CPSF1-203ENST00000527916 LRP6O75581 1613 aa16.37■□□□□ 0.21
CPSF1-203ENST00000527916 DAPK1P53355 1430 aa16.36■□□□□ 0.21
CPSF1-203ENST00000527916 C19orf44Q9H6X5 657 aa16.36■□□□□ 0.21
CPSF1-203ENST00000527916 TBX22Q9Y458 520 aa16.36■□□□□ 0.21
CPSF1-203ENST00000527916 PTPN23Q9H3S7 1636 aa16.35■□□□□ 0.21
CPSF1-203ENST00000527916 ZFYVE9O95405 1425 aa16.35■□□□□ 0.21
CPSF1-203ENST00000527916 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.34■□□□□ 0.21
CPSF1-203ENST00000527916 CHIC2Q9UKJ5 165 aa16.34■□□□□ 0.21
CPSF1-203ENST00000527916 RIMS2Q9UQ26 1411 aa16.34■□□□□ 0.21
CPSF1-203ENST00000527916 RPRD2Q5VT52 1461 aaKnown RBP16.34■□□□□ 0.21
CPSF1-203ENST00000527916 AHDC1Q5TGY3 1603 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-203ENST00000527916 SHPRHQ149N8 1683 aa16.34■□□□□ 0.21
CPSF1-203ENST00000527916 CDK12Q9NYV4 1490 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-203ENST00000527916 NUTM2BA6NNL0 878 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-203ENST00000527916 NUTM2EB1AL46 878 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-203ENST00000527916 NUTM2AQ8IVF1 878 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-203ENST00000527916 PIK3R4Q99570 1358 aa16.3■□□□□ 0.2
CPSF1-203ENST00000527916 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-203ENST00000527916 MYO5BQ9ULV0 1848 aa16.29■□□□□ 0.2
CPSF1-203ENST00000527916 CHGAP10645 457 aaKnown RBP16.29■□□□□ 0.2
CPSF1-203ENST00000527916 AFF2P51816 1311 aa16.28■□□□□ 0.2
CPSF1-203ENST00000527916 BRINP3Q76B58 766 aa16.28■□□□□ 0.2
CPSF1-203ENST00000527916 DIP2AQ14689 1571 aa16.27■□□□□ 0.2
CPSF1-203ENST00000527916 GCC2Q8IWJ2 1684 aa16.27■□□□□ 0.19
CPSF1-203ENST00000527916 TMEM131LA2VDJ0 1609 aa16.27■□□□□ 0.19
CPSF1-203ENST00000527916 RBM6P78332 1123 aaKnown RBP16.25■□□□□ 0.19
CPSF1-203ENST00000527916 LRRC59Q96AG4 307 aaKnown RBP16.25■□□□□ 0.19
CPSF1-203ENST00000527916 AMOTL2Q9Y2J4 779 aa16.25■□□□□ 0.19
CPSF1-203ENST00000527916 ADAMTS13Q76LX8 1427 aa16.25■□□□□ 0.19
CPSF1-203ENST00000527916 FOXD1Q16676 465 aa16.24■□□□□ 0.19
CPSF1-203ENST00000527916 NUTM2DQ5VT03 806 aaPredicted RBP16.24■□□□□ 0.19
CPSF1-203ENST00000527916 DCCP43146 1447 aa16.24■□□□□ 0.19
CPSF1-203ENST00000527916 ANKRD50Q9ULJ7 1429 aa16.24■□□□□ 0.19
CPSF1-203ENST00000527916 ADGRL2O95490 1459 aa16.23■□□□□ 0.19
CPSF1-203ENST00000527916 SETD5Q9C0A6 1442 aa16.23■□□□□ 0.19
CPSF1-203ENST00000527916 C8orf37Q96NL8 207 aa16.23■□□□□ 0.19
CPSF1-203ENST00000527916 QTRT2Q9H974 415 aaKnown RBP16.23■□□□□ 0.19
CPSF1-203ENST00000527916 TRPM2O94759 1503 aa16.22■□□□□ 0.19
CPSF1-203ENST00000527916 NGLY1Q96IV0 654 aa16.21■□□□□ 0.19
CPSF1-203ENST00000527916 ASXL1Q8IXJ9 1541 aa16.2■□□□□ 0.18
CPSF1-203ENST00000527916 RGS12O14924 1447 aa16.19■□□□□ 0.18
CPSF1-203ENST00000527916 FAM50AQ14320 339 aaKnown RBP16.18■□□□□ 0.18
CPSF1-203ENST00000527916 ATAD2Q6PL18 1390 aa16.17■□□□□ 0.18
CPSF1-203ENST00000527916 MST1RQ04912 1400 aa16.16■□□□□ 0.18
CPSF1-203ENST00000527916 PTPRUQ92729 1446 aa16.16■□□□□ 0.18
CPSF1-203ENST00000527916 NHSL1Q5SYE7 1610 aa16.16■□□□□ 0.18
CPSF1-203ENST00000527916 PNPLA6Q8IY17 1366 aa16.15■□□□□ 0.18
CPSF1-203ENST00000527916 ZRANB1Q9UGI0 708 aa16.15■□□□□ 0.18
CPSF1-203ENST00000527916 ADAMTS2O95450 1211 aa16.14■□□□□ 0.17
CPSF1-203ENST00000527916 EP400Q96L91 3159 aa16.14■□□□□ 0.17
CPSF1-203ENST00000527916 UNC13BO14795 1591 aa16.13■□□□□ 0.17
CPSF1-203ENST00000527916 E9PCH4 1651 aa16.12■□□□□ 0.17
CPSF1-203ENST00000527916 XRN1Q8IZH2 1706 aaKnown RBP16.11■□□□□ 0.17
CPSF1-203ENST00000527916 DDX17Q92841 729 aaKnown RBP16.11■□□□□ 0.17
CPSF1-203ENST00000527916 USP21Q9UK80 565 aa16.11■□□□□ 0.17
CPSF1-203ENST00000527916 TRPC5Q9UL62 973 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-203ENST00000527916 ADGRL3Q9HAR2 1447 aa16.1■□□□□ 0.17
CPSF1-203ENST00000527916 SETBP1Q9Y6X0 1596 aa16.09■□□□□ 0.17
CPSF1-203ENST00000527916 ZNF326Q5BKZ1 582 aaKnown RBP16.09■□□□□ 0.17
CPSF1-203ENST00000527916 CCDC125Q86Z20 511 aa16.08■□□□□ 0.16
CPSF1-203ENST00000527916 NUP155O75694 1391 aa16.07■□□□□ 0.16
CPSF1-203ENST00000527916 METP08581 1390 aa16.07■□□□□ 0.16
CPSF1-203ENST00000527916 IQGAP3Q86VI3 1631 aa16.07■□□□□ 0.16
CPSF1-203ENST00000527916 NRXN3Q9Y4C0 1643 aa16.06■□□□□ 0.16
CPSF1-203ENST00000527916 ROCK1Q13464 1354 aa16.06■□□□□ 0.16
CPSF1-203ENST00000527916 FNBP4Q8N3X1 1017 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-203ENST00000527916 PTCH1Q13635 1447 aa16.05■□□□□ 0.16
CPSF1-203ENST00000527916 C1orf167Q5SNV9 1468 aa16.04■□□□□ 0.16
CPSF1-203ENST00000527916 SOS2Q07890 1332 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-203ENST00000527916 NALCNQ8IZF0 1738 aa16.02■□□□□ 0.15
CPSF1-203ENST00000527916 ATRNO75882 1429 aa16.02■□□□□ 0.15
CPSF1-203ENST00000527916 LAMC1P11047 1609 aa16.01■□□□□ 0.15
CPSF1-203ENST00000527916 ORAI2Q96SN7 254 aa16■□□□□ 0.15
CPSF1-203ENST00000527916 SPHKAPQ2M3C7 1700 aa15.98■□□□□ 0.15
CPSF1-203ENST00000527916 PPARGC1BQ86YN6 1023 aaKnown RBP15.98■□□□□ 0.15
CPSF1-203ENST00000527916 NPHP3Q7Z494 1330 aa15.96■□□□□ 0.15
CPSF1-203ENST00000527916 GJD4Q96KN9 370 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-203ENST00000527916 COL22A1Q8NFW1 1626 aaPredicted RBP15.96■□□□□ 0.15
CPSF1-203ENST00000527916 VGFO15240 615 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-203ENST00000527916 RRBP1Q9P2E9 1410 aaKnown RBP15.94■□□□□ 0.14
CPSF1-203ENST00000527916 NEXMIFQ5QGS0 1516 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms