RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 SCRIBQ14160 1630 aa7.94□□□□□ -1.14
CD44-225ENST00000527326 AAMPQ13685 434 aa7.94□□□□□ -1.14
CD44-225ENST00000527326 ARIH1Q9Y4X5 557 aaPredicted RBP7.94□□□□□ -1.14
CD44-225ENST00000527326 BCAMP50895 628 aa7.93□□□□□ -1.14
CD44-225ENST00000527326 ZFRQ96KR1 1074 aaKnown RBP7.93□□□□□ -1.14
CD44-225ENST00000527326 ARXQ96QS3 562 aa7.93□□□□□ -1.14
CD44-225ENST00000527326 PACS2Q86VP3 889 aa7.92□□□□□ -1.14
CD44-225ENST00000527326 FAM43AQ8N2R8 423 aa7.92□□□□□ -1.14
CD44-225ENST00000527326 SOWAHBA6NEL2 793 aa7.91□□□□□ -1.14
CD44-225ENST00000527326 RRP9O43818 475 aaKnown RBP7.91□□□□□ -1.14
CD44-225ENST00000527326 ITGAEP38570 1179 aa7.91□□□□□ -1.14
CD44-225ENST00000527326 PRIM1P49642 420 aaKnown RBP7.9□□□□□ -1.14
CD44-225ENST00000527326 RBM10P98175 930 aaKnown RBP7.9□□□□□ -1.14
CD44-225ENST00000527326 FAM98CQ17RN3 349 aaKnown RBP7.9□□□□□ -1.14
CD44-225ENST00000527326 TAF7LQ5H9L4 462 aa7.9□□□□□ -1.14
CD44-225ENST00000527326 TSKSQ9UJT2 592 aa7.9□□□□□ -1.14
CD44-225ENST00000527326 CDCA7LQ96GN5 454 aa7.89□□□□□ -1.15
CD44-225ENST00000527326 OSBPP22059 807 aa7.88□□□□□ -1.15
CD44-225ENST00000527326 ANP32AP39687 249 aaKnown RBP7.88□□□□□ -1.15
CD44-225ENST00000527326 PRSS12P56730 875 aa7.88□□□□□ -1.15
CD44-225ENST00000527326 IPO9Q96P70 1041 aaKnown RBP7.88□□□□□ -1.15
CD44-225ENST00000527326 WBP1LQ9NX94 342 aa7.88□□□□□ -1.15
CD44-225ENST00000527326 IFFO2Q5TF58 517 aa7.87□□□□□ -1.15
CD44-225ENST00000527326 CERKQ8TCT0 537 aa7.87□□□□□ -1.15
CD44-225ENST00000527326 LRCH3Q96II8 777 aa7.87□□□□□ -1.15
CD44-225ENST00000527326 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.87□□□□□ -1.15
CD44-225ENST00000527326 SMAPO00193 183 aa7.86□□□□□ -1.15
CD44-225ENST00000527326 TIMELESSQ9UNS1 1208 aa7.86□□□□□ -1.15
CD44-225ENST00000527326 A0A0U1RQG5 324 aaPredicted RBP7.85□□□□□ -1.15
CD44-225ENST00000527326 PPM1GO15355 546 aaPredicted RBP7.85□□□□□ -1.15
CD44-225ENST00000527326 NEFMP07197 916 aa7.85□□□□□ -1.15
CD44-225ENST00000527326 ZNF326Q5BKZ1 582 aaKnown RBP7.85□□□□□ -1.15
CD44-225ENST00000527326 CDHR5Q9HBB8 845 aa7.85□□□□□ -1.15
CD44-225ENST00000527326 PPP4R2Q9NY27 417 aa7.85□□□□□ -1.15
CD44-225ENST00000527326 HPS5Q9UPZ3 1129 aa7.85□□□□□ -1.15
CD44-225ENST00000527326 EEA1Q15075 1411 aa7.85□□□□□ -1.15
CD44-225ENST00000527326 HSP90AA2PQ14568 343 aaPredicted RBP7.84□□□□□ -1.15
CD44-225ENST00000527326 NYAP1Q6ZVC0 841 aa7.84□□□□□ -1.15
CD44-225ENST00000527326 FAM198AQ9UFP1 575 aa7.84□□□□□ -1.15
CD44-225ENST00000527326 TSR3Q9UJK0 312 aaKnown RBP7.84□□□□□ -1.15
CD44-225ENST00000527326 CCER2I3L3R5 266 aa7.83□□□□□ -1.16
CD44-225ENST00000527326 ARHGEF1Q92888 912 aaKnown RBP7.83□□□□□ -1.16
CD44-225ENST00000527326 A0A0G2JS52 829 aa7.82□□□□□ -1.16
CD44-225ENST00000527326 NBPF26B4DH59 902 aa7.82□□□□□ -1.16
CD44-225ENST00000527326 TATDN2Q93075 761 aa7.82□□□□□ -1.16
CD44-225ENST00000527326 PNMA3Q9UL41 463 aa7.82□□□□□ -1.16
CD44-225ENST00000527326 CUX2O14529 1486 aa7.81□□□□□ -1.16
CD44-225ENST00000527326 ITGBL1O95965 494 aaPredicted RBP7.81□□□□□ -1.16
CD44-225ENST00000527326 PPP4CP60510 307 aa7.81□□□□□ -1.16
CD44-225ENST00000527326 SAMD7Q7Z3H4 446 aa7.81□□□□□ -1.16
CD44-225ENST00000527326 BRPF3Q9ULD4 1205 aa7.81□□□□□ -1.16
CD44-225ENST00000527326 CENPJQ9HC77 1338 aaPredicted RBP7.8□□□□□ -1.16
CD44-225ENST00000527326 C3orf80F5H4A9 247 aa7.8□□□□□ -1.16
CD44-225ENST00000527326 TULP1O00294 542 aaPredicted RBP7.8□□□□□ -1.16
CD44-225ENST00000527326 HSP90AA1P07900 732 aaKnown RBP7.8□□□□□ -1.16
CD44-225ENST00000527326 MLLT3P42568 568 aaPredicted RBP7.8□□□□□ -1.16
CD44-225ENST00000527326 KCNV2Q8TDN2 545 aa7.8□□□□□ -1.16
CD44-225ENST00000527326 RGS20O76081 388 aa7.79□□□□□ -1.16
CD44-225ENST00000527326 HDGFP51858 240 aaKnown RBP7.79□□□□□ -1.16
CD44-225ENST00000527326 CALD1Q05682 793 aaKnown RBP7.79□□□□□ -1.16
CD44-225ENST00000527326 NUDT18Q6ZVK8 323 aa7.79□□□□□ -1.16
CD44-225ENST00000527326 KCNC4Q03721 635 aa7.78□□□□□ -1.16
CD44-225ENST00000527326 NPDC1Q9NQX5 325 aaPredicted RBP7.78□□□□□ -1.16
CD44-225ENST00000527326 PADI6Q6TGC4 694 aa7.77□□□□□ -1.17
CD44-225ENST00000527326 RBM27Q9P2N5 1060 aaKnown RBP7.77□□□□□ -1.17
CD44-225ENST00000527326 RNF40O75150 1001 aa7.76□□□□□ -1.17
CD44-225ENST00000527326 TTC13Q8NBP0 860 aa7.75□□□□□ -1.17
CD44-225ENST00000527326 RSPH4AQ5TD94 716 aa7.74□□□□□ -1.17
CD44-225ENST00000527326 ERCC6Q03468 1493 aa7.74□□□□□ -1.17
CD44-225ENST00000527326 NCLP19338 710 aaKnown RBP7.73□□□□□ -1.17
CD44-225ENST00000527326 P3H3Q8IVL6 736 aa7.73□□□□□ -1.17
CD44-225ENST00000527326 NUTM2FA1L443 756 aa7.72□□□□□ -1.17
CD44-225ENST00000527326 TJAP1Q5JTD0 557 aa7.71□□□□□ -1.18
CD44-225ENST00000527326 SWT1Q5T5J6 900 aaKnown RBP7.71□□□□□ -1.18
CD44-225ENST00000527326 IRX2Q9BZI1 471 aaPredicted RBP7.71□□□□□ -1.18
CD44-225ENST00000527326 PRDM4Q9UKN5 801 aa7.71□□□□□ -1.18
CD44-225ENST00000527326 SEMA3EO15041 775 aa7.7□□□□□ -1.18
CD44-225ENST00000527326 SLC4A3P48751 1232 aa7.7□□□□□ -1.18
CD44-225ENST00000527326 PTGDRQ13258 359 aa7.7□□□□□ -1.18
CD44-225ENST00000527326 EYA1Q99502 592 aa7.7□□□□□ -1.18
CD44-225ENST00000527326 MTRQ99707 1265 aa7.7□□□□□ -1.18
CD44-225ENST00000527326 CEP162Q5TB80 1403 aa7.69□□□□□ -1.18
CD44-225ENST00000527326 APLP1P51693 650 aa7.69□□□□□ -1.18
CD44-225ENST00000527326 TMEM132AQ24JP5 1023 aa7.69□□□□□ -1.18
CD44-225ENST00000527326 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.69□□□□□ -1.18
CD44-225ENST00000527326 SLF2Q8IX21 1173 aa7.69□□□□□ -1.18
CD44-225ENST00000527326 IPO4Q8TEX9 1081 aaKnown RBP7.69□□□□□ -1.18
CD44-225ENST00000527326 NAP1L5Q96NT1 182 aaPredicted RBP7.69□□□□□ -1.18
CD44-225ENST00000527326 PDCL3Q9H2J4 239 aa7.69□□□□□ -1.18
CD44-225ENST00000527326 IL21Q9HBE4 155 aa7.69□□□□□ -1.18
CD44-225ENST00000527326 NAP1L2Q9ULW6 460 aaPredicted RBP7.69□□□□□ -1.18
CD44-225ENST00000527326 DHX57Q6P158 1386 aaKnown RBP7.69□□□□□ -1.18
CD44-225ENST00000527326 ANP32CO43423 234 aa7.68□□□□□ -1.18
CD44-225ENST00000527326 NECTIN2Q92692 538 aa7.68□□□□□ -1.18
CD44-225ENST00000527326 DDRGK1Q96HY6 314 aa7.68□□□□□ -1.18
CD44-225ENST00000527326 PNNQ9H307 717 aaKnown RBP7.68□□□□□ -1.18
CD44-225ENST00000527326 NCAPD3P42695 1498 aa7.68□□□□□ -1.18
CD44-225ENST00000527326 SMARCA2P51531 1590 aa7.67□□□□□ -1.18
CD44-225ENST00000527326 TPM2P07951 284 aa7.67□□□□□ -1.18
CD44-225ENST00000527326 BRD2P25440 801 aaKnown RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms