RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 A2ML1A8K2U0 1454 aa26.51■■□□□ 1.83
VPS28-207ENST00000526977 PLPPR3Q6T4P5 718 aa26.5■■□□□ 1.83
VPS28-207ENST00000526977 ADGRF5Q8IZF2 1346 aa26.49■■□□□ 1.83
VPS28-207ENST00000526977 ROCK2O75116 1388 aaKnown RBP26.49■■□□□ 1.83
VPS28-207ENST00000526977 PPLO60437 1756 aa26.49■■□□□ 1.83
VPS28-207ENST00000526977 NRXN1Q9ULB1 1477 aa26.49■■□□□ 1.83
VPS28-207ENST00000526977 ZFYVE9O95405 1425 aa26.48■■□□□ 1.83
VPS28-207ENST00000526977 CARD11Q9BXL7 1154 aa26.48■■□□□ 1.83
VPS28-207ENST00000526977 TRPM1Q7Z4N2 1603 aa26.48■■□□□ 1.83
VPS28-207ENST00000526977 NEXMIFQ5QGS0 1516 aa26.48■■□□□ 1.83
VPS28-207ENST00000526977 HSPA5P11021 654 aaKnown RBP26.48■■□□□ 1.83
VPS28-207ENST00000526977 KDM5AP29375 1690 aaKnown RBP26.47■■□□□ 1.83
VPS28-207ENST00000526977 GPRASP1Q5JY77 1395 aa26.46■■□□□ 1.83
VPS28-207ENST00000526977 HDGFP51858 240 aaKnown RBP26.45■■□□□ 1.82
VPS28-207ENST00000526977 MYO5BQ9ULV0 1848 aa26.45■■□□□ 1.82
VPS28-207ENST00000526977 NBPF1Q3BBV0 1214 aa26.44■■□□□ 1.82
VPS28-207ENST00000526977 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.42■■□□□ 1.82
VPS28-207ENST00000526977 PIK3C2GO75747 1445 aa26.42■■□□□ 1.82
VPS28-207ENST00000526977 CENPBP07199 599 aaPredicted RBP26.41■■□□□ 1.82
VPS28-207ENST00000526977 KIAA1210Q9ULL0 1709 aa26.41■■□□□ 1.82
VPS28-207ENST00000526977 PTPRMP28827 1452 aa26.4■■□□□ 1.82
VPS28-207ENST00000526977 NUTM2DQ5VT03 806 aaPredicted RBP26.4■■□□□ 1.82
VPS28-207ENST00000526977 YTHDC1Q96MU7 727 aaKnown RBP26.4■■□□□ 1.82
VPS28-207ENST00000526977 C14orf93Q9H972 538 aaKnown RBP26.39■■□□□ 1.82
VPS28-207ENST00000526977 RIMS2Q9UQ26 1411 aa26.39■■□□□ 1.82
VPS28-207ENST00000526977 USP47Q96K76 1375 aa26.39■■□□□ 1.82
VPS28-207ENST00000526977 CFAP70Q5T0N1 1121 aa26.39■■□□□ 1.81
VPS28-207ENST00000526977 UBR1Q8IWV7 1749 aa26.39■■□□□ 1.81
VPS28-207ENST00000526977 LAMC1P11047 1609 aa26.38■■□□□ 1.81
VPS28-207ENST00000526977 THEMISQ8N1K5 641 aaPredicted RBP26.38■■□□□ 1.81
VPS28-207ENST00000526977 TMEM2Q9UHN6 1383 aa26.37■■□□□ 1.81
VPS28-207ENST00000526977 SETD1BQ9UPS6 1966 aaKnown RBP26.36■■□□□ 1.81
VPS28-207ENST00000526977 MYO3AQ8NEV4 1616 aa26.35■■□□□ 1.81
VPS28-207ENST00000526977 WASHC2AQ641Q2 1341 aa26.31■■□□□ 1.8
VPS28-207ENST00000526977 SETBP1Q9Y6X0 1596 aa26.3■■□□□ 1.8
VPS28-207ENST00000526977 CEP170BQ9Y4F5 1589 aaPredicted RBP26.3■■□□□ 1.8
VPS28-207ENST00000526977 EID1Q9Y6B2 187 aa26.29■■□□□ 1.8
VPS28-207ENST00000526977 SCAF11Q99590 1463 aaKnown RBP26.28■■□□□ 1.8
VPS28-207ENST00000526977 ST20-MTHFSA0A0A6YYL1 179 aa26.28■■□□□ 1.8
VPS28-207ENST00000526977 SLIT1O75093 1534 aa26.28■■□□□ 1.8
VPS28-207ENST00000526977 ARHGAP23Q9P227 1491 aa26.27■■□□□ 1.8
VPS28-207ENST00000526977 C11orf95C9JLR9 678 aaPredicted RBP26.26■■□□□ 1.79
VPS28-207ENST00000526977 TXNDC2Q86VQ3 553 aa26.26■■□□□ 1.79
VPS28-207ENST00000526977 KDM4FA0A1W2PPD8 638 aa26.26■■□□□ 1.79
VPS28-207ENST00000526977 SCAF1Q9H7N4 1312 aaKnown RBP26.25■■□□□ 1.79
VPS28-207ENST00000526977 ZNF142P52746 1687 aaPredicted RBP26.24■■□□□ 1.79
VPS28-207ENST00000526977 EIF3AQ14152 1382 aaKnown RBP26.23■■□□□ 1.79
VPS28-207ENST00000526977 LTKP29376 864 aa26.23■■□□□ 1.79
VPS28-207ENST00000526977 ADGRB1O14514 1584 aa26.23■■□□□ 1.79
VPS28-207ENST00000526977 TMEM132EQ6IEE7 984 aa26.22■■□□□ 1.79
VPS28-207ENST00000526977 ALKQ9UM73 1620 aa26.21■■□□□ 1.79
VPS28-207ENST00000526977 IQGAP1P46940 1657 aa26.21■■□□□ 1.79
VPS28-207ENST00000526977 ANP32CO43423 234 aa26.21■■□□□ 1.79
VPS28-207ENST00000526977 PLEKHG1Q9ULL1 1385 aa26.2■■□□□ 1.79
VPS28-207ENST00000526977 CCDC7Q96M83 1385 aa26.19■■□□□ 1.78
VPS28-207ENST00000526977 BCANQ96GW7 911 aa26.18■■□□□ 1.78
VPS28-207ENST00000526977 SLC24A1O60721 1099 aa26.17■■□□□ 1.78
VPS28-207ENST00000526977 SENP3Q9H4L4 574 aaPredicted RBP26.17■■□□□ 1.78
VPS28-207ENST00000526977 ANKLE2Q86XL3 938 aa26.15■■□□□ 1.78
VPS28-207ENST00000526977 TESK2Q96S53 571 aa26.15■■□□□ 1.78
VPS28-207ENST00000526977 TRAK1Q9UPV9 953 aa26.15■■□□□ 1.78
VPS28-207ENST00000526977 NRXN3Q9Y4C0 1643 aa26.13■■□□□ 1.77
VPS28-207ENST00000526977 CCER2I3L3R5 266 aa26.12■■□□□ 1.77
VPS28-207ENST00000526977 KIF7Q2M1P5 1343 aa26.12■■□□□ 1.77
VPS28-207ENST00000526977 YTHDC2Q9H6S0 1430 aaKnown RBP26.11■■□□□ 1.77
VPS28-207ENST00000526977 ASXL1Q8IXJ9 1541 aa26.11■■□□□ 1.77
VPS28-207ENST00000526977 ADAMTS13Q76LX8 1427 aa26.1■■□□□ 1.77
VPS28-207ENST00000526977 TMF1P82094 1093 aa26.1■■□□□ 1.77
VPS28-207ENST00000526977 CENPJQ9HC77 1338 aaPredicted RBP26.09■■□□□ 1.77
VPS28-207ENST00000526977 TBX22Q9Y458 520 aa26.09■■□□□ 1.77
VPS28-207ENST00000526977 SETD1AO15047 1707 aaKnown RBP26.08■■□□□ 1.77
VPS28-207ENST00000526977 STK26Q9P289 416 aa26.08■■□□□ 1.77
VPS28-207ENST00000526977 LRPPRCP42704 1394 aaKnown RBP26.07■■□□□ 1.76
VPS28-207ENST00000526977 MED14O60244 1454 aa26.07■■□□□ 1.76
VPS28-207ENST00000526977 METP08581 1390 aa26.07■■□□□ 1.76
VPS28-207ENST00000526977 SBNO2Q9Y2G9 1366 aa26.06■■□□□ 1.76
VPS28-207ENST00000526977 POLR1AO95602 1720 aaPredicted RBP26.06■■□□□ 1.76
VPS28-207ENST00000526977 ABCC11Q96J66 1382 aa26.06■■□□□ 1.76
VPS28-207ENST00000526977 CDCA8Q53HL2 280 aa26.04■■□□□ 1.76
VPS28-207ENST00000526977 SLC26A8Q96RN1 970 aa26.04■■□□□ 1.76
VPS28-207ENST00000526977 DIP2AQ14689 1571 aa26.02■■□□□ 1.76
VPS28-207ENST00000526977 SIRT1Q96EB6 747 aa26.02■■□□□ 1.76
VPS28-207ENST00000526977 DLC1Q96QB1 1528 aa26■■□□□ 1.75
VPS28-207ENST00000526977 ARHGEF28Q8N1W1 1705 aaKnown RBP26■■□□□ 1.75
VPS28-207ENST00000526977 DISP3Q9P2K9 1392 aa26■■□□□ 1.75
VPS28-207ENST00000526977 POGKQ9P215 609 aa26■■□□□ 1.75
VPS28-207ENST00000526977 POLR3GLQ9BT43 218 aa25.99■■□□□ 1.75
VPS28-207ENST00000526977 PRAM1Q96QH2 718 aa25.98■■□□□ 1.75
VPS28-207ENST00000526977 TECPR2O15040 1411 aa25.98■■□□□ 1.75
VPS28-207ENST00000526977 GTF3C3Q9Y5Q9 886 aa25.97■■□□□ 1.75
VPS28-207ENST00000526977 PIK3R4Q99570 1358 aa25.97■■□□□ 1.75
VPS28-207ENST00000526977 NPHP4O75161 1426 aaPredicted RBP25.96■■□□□ 1.75
VPS28-207ENST00000526977 NCKAP5LQ9HCH0 1330 aa25.94■■□□□ 1.74
VPS28-207ENST00000526977 QRICH2Q9H0J4 1663 aa25.94■■□□□ 1.74
VPS28-207ENST00000526977 FAM135BQ49AJ0 1406 aa25.94■■□□□ 1.74
VPS28-207ENST00000526977 AMOTL2Q9Y2J4 779 aa25.92■■□□□ 1.74
VPS28-207ENST00000526977 KNDC1Q76NI1 1749 aa25.92■■□□□ 1.74
VPS28-207ENST00000526977 SAFB2Q14151 953 aaKnown RBP eCLIP25.92■■□□□ 1.74
VPS28-207ENST00000526977 EVC2Q86UK5 1308 aa25.91■■□□□ 1.74
VPS28-207ENST00000526977 LMTK3Q96Q04 1460 aa25.91■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms