RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 ARAP3Q8WWN8 1544 aa8.15□□□□□ -1.1
CD44-218ENST00000525469 IGF1RP08069 1367 aa8.15□□□□□ -1.1
CD44-218ENST00000525469 KIF27Q86VH2 1401 aa8.14□□□□□ -1.11
CD44-218ENST00000525469 EVI5O60447 810 aa8.14□□□□□ -1.11
CD44-218ENST00000525469 PLCB2Q00722 1185 aa8.14□□□□□ -1.11
CD44-218ENST00000525469 PHLDB1Q86UU1 1377 aa8.13□□□□□ -1.11
CD44-218ENST00000525469 E2F4Q16254 413 aa8.13□□□□□ -1.11
CD44-218ENST00000525469 CARMIL1Q5VZK9 1371 aa8.12□□□□□ -1.11
CD44-218ENST00000525469 PTGER2P43116 358 aa8.12□□□□□ -1.11
CD44-218ENST00000525469 KRTAP3-3Q9BYR6 98 aa8.12□□□□□ -1.11
CD44-218ENST00000525469 KRTAP3-2Q9BYR7 98 aa8.12□□□□□ -1.11
CD44-218ENST00000525469 EMILIN3Q9NT22 766 aa8.12□□□□□ -1.11
CD44-218ENST00000525469 DISP1Q96F81 1524 aa8.12□□□□□ -1.11
CD44-218ENST00000525469 RAPGEF3O95398 923 aa8.11□□□□□ -1.11
CD44-218ENST00000525469 FAM9AQ8IZU1 332 aaPredicted RBP8.11□□□□□ -1.11
CD44-218ENST00000525469 ZNF454Q8N9F8 522 aa8.11□□□□□ -1.11
CD44-218ENST00000525469 POGZQ7Z3K3 1410 aa8.11□□□□□ -1.11
CD44-218ENST00000525469 ANO8Q9HCE9 1232 aaPredicted RBP8.1□□□□□ -1.11
CD44-218ENST00000525469 SETD1BQ9UPS6 1966 aaKnown RBP8.1□□□□□ -1.11
CD44-218ENST00000525469 SPDYE16A6NNV3 312 aaPredicted RBP8.09□□□□□ -1.11
CD44-218ENST00000525469 DPYSL4O14531 572 aa8.09□□□□□ -1.11
CD44-218ENST00000525469 ARHGAP33O14559 1287 aa8.09□□□□□ -1.11
CD44-218ENST00000525469 LSM11P83369 360 aaKnown RBP eCLIP8.09□□□□□ -1.11
CD44-218ENST00000525469 KIAA0556O60303 1618 aa8.09□□□□□ -1.11
CD44-218ENST00000525469 FER1L4A9Z1Z3 1794 aa8.08□□□□□ -1.12
CD44-218ENST00000525469 TSHZ2Q9NRE2 1034 aa8.08□□□□□ -1.12
CD44-218ENST00000525469 YEATS2Q9ULM3 1422 aa8.08□□□□□ -1.12
CD44-218ENST00000525469 PREX1Q8TCU6 1659 aa8.08□□□□□ -1.12
CD44-218ENST00000525469 FOSBP53539 338 aa8.07□□□□□ -1.12
CD44-218ENST00000525469 P3H3Q8IVL6 736 aa8.07□□□□□ -1.12
CD44-218ENST00000525469 SPNS2Q8IVW8 549 aa8.07□□□□□ -1.12
CD44-218ENST00000525469 FBXW7Q969H0 707 aa8.07□□□□□ -1.12
CD44-218ENST00000525469 UGGT2Q9NYU1 1516 aa8.07□□□□□ -1.12
CD44-218ENST00000525469 STRCQ7RTU9 1775 aa8.07□□□□□ -1.12
CD44-218ENST00000525469 FANCAO15360 1455 aa8.06□□□□□ -1.12
CD44-218ENST00000525469 SUPT5HO00267 1087 aaKnown RBP8.06□□□□□ -1.12
CD44-218ENST00000525469 MLECQ14165 292 aa8.06□□□□□ -1.12
CD44-218ENST00000525469 ANKRD13DQ6ZTN6 518 aa8.06□□□□□ -1.12
CD44-218ENST00000525469 ZDHHC16Q969W1 377 aa8.06□□□□□ -1.12
CD44-218ENST00000525469 BCL2L12Q9HB09 334 aa8.06□□□□□ -1.12
CD44-218ENST00000525469 ARIH1Q9Y4X5 557 aaPredicted RBP8.06□□□□□ -1.12
CD44-218ENST00000525469 NEO1Q92859 1461 aa8.06□□□□□ -1.12
CD44-218ENST00000525469 PHF14O94880 888 aa8.05□□□□□ -1.12
CD44-218ENST00000525469 PTPREP23469 700 aa8.05□□□□□ -1.12
CD44-218ENST00000525469 PDIA6Q15084 440 aa8.05□□□□□ -1.12
CD44-218ENST00000525469 EPAS1Q99814 870 aa8.05□□□□□ -1.12
CD44-218ENST00000525469 ARHGEF40Q8TER5 1519 aa8.04□□□□□ -1.12
CD44-218ENST00000525469 ABCA9Q8IUA7 1624 aa8.04□□□□□ -1.12
CD44-218ENST00000525469 TYW1BQ6NUM6 668 aa8.04□□□□□ -1.12
CD44-218ENST00000525469 KCNK17Q96T54 332 aa8.04□□□□□ -1.12
CD44-218ENST00000525469 AKNAQ7Z591 1439 aa8.03□□□□□ -1.12
CD44-218ENST00000525469 IQSEC2Q5JU85 1478 aa8.03□□□□□ -1.12
CD44-218ENST00000525469 ARID3CA6NKF2 412 aa8.03□□□□□ -1.12
CD44-218ENST00000525469 HAP1P54257 671 aaPredicted RBP8.03□□□□□ -1.12
CD44-218ENST00000525469 ABCA8O94911 1581 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 FRMPD1Q5SYB0 1578 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 TTC37Q6PGP7 1564 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 GOLGA3Q08378 1498 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 UBAP1LF5GYI3 381 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 TK2O00142 265 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 MMRN1Q13201 1228 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 STAC3Q96MF2 364 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 AXIN2Q9Y2T1 843 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 UHRF1BP1Q6BDS2 1440 aa8.02□□□□□ -1.13
CD44-218ENST00000525469 ARHGEF1Q92888 912 aaKnown RBP8.01□□□□□ -1.13
CD44-218ENST00000525469 PTPRTO14522 1441 aa8.01□□□□□ -1.13
CD44-218ENST00000525469 RICTORQ6R327 1708 aa8□□□□□ -1.13
CD44-218ENST00000525469 DENND4BO75064 1496 aaPredicted RBP8□□□□□ -1.13
CD44-218ENST00000525469 CTTNBP2Q8WZ74 1663 aa8□□□□□ -1.13
CD44-218ENST00000525469 MYT1LQ9UL68 1186 aa8□□□□□ -1.13
CD44-218ENST00000525469 PCDHGA10Q9Y5H3 936 aa8□□□□□ -1.13
CD44-218ENST00000525469 RAPGEF2Q9Y4G8 1499 aa8□□□□□ -1.13
CD44-218ENST00000525469 EFCAB5A4FU69 1503 aa7.99□□□□□ -1.13
CD44-218ENST00000525469 PSEN2P49810 448 aa7.99□□□□□ -1.13
CD44-218ENST00000525469 ADGRD1Q6QNK2 874 aa7.99□□□□□ -1.13
CD44-218ENST00000525469 ZFYVE16Q7Z3T8 1539 aa7.98□□□□□ -1.13
CD44-218ENST00000525469 CFAP74Q9C0B2 1584 aa7.98□□□□□ -1.13
CD44-218ENST00000525469 CEBPAP49715 358 aaPredicted RBP7.98□□□□□ -1.13
CD44-218ENST00000525469 NBR1Q14596 966 aa7.98□□□□□ -1.13
CD44-218ENST00000525469 POTEEQ6S8J3 1075 aa7.98□□□□□ -1.13
CD44-218ENST00000525469 RNF166Q96A37 237 aaPredicted RBP7.98□□□□□ -1.13
CD44-218ENST00000525469 SLC4A5Q9BY07 1137 aa7.98□□□□□ -1.13
CD44-218ENST00000525469 ADAM33Q9BZ11 813 aa7.98□□□□□ -1.13
CD44-218ENST00000525469 MED1Q15648 1581 aaPredicted RBP7.97□□□□□ -1.13
CD44-218ENST00000525469 LTBP4Q8N2S1 1624 aa7.97□□□□□ -1.13
CD44-218ENST00000525469 PPP1R3GB7ZBB8 358 aa7.97□□□□□ -1.13
CD44-218ENST00000525469 DDX12PQ92771 950 aa7.97□□□□□ -1.13
CD44-218ENST00000525469 FHOD3Q2V2M9 1422 aa7.96□□□□□ -1.13
CD44-218ENST00000525469 ATP10BO94823 1461 aa7.96□□□□□ -1.13
CD44-218ENST00000525469 SIGLEC1Q9BZZ2 1709 aa7.96□□□□□ -1.14
CD44-218ENST00000525469 MAGI2Q86UL8 1455 aa7.95□□□□□ -1.14
CD44-218ENST00000525469 DMRTA1Q5VZB9 504 aa7.95□□□□□ -1.14
CD44-218ENST00000525469 KCNV2Q8TDN2 545 aa7.95□□□□□ -1.14
CD44-218ENST00000525469 ESF1Q9H501 851 aaKnown RBP7.95□□□□□ -1.14
CD44-218ENST00000525469 ZMYM4Q5VZL5 1548 aa7.94□□□□□ -1.14
CD44-218ENST00000525469 MAP3K7O43318 606 aa7.94□□□□□ -1.14
CD44-218ENST00000525469 EN1Q05925 392 aaPredicted RBP7.94□□□□□ -1.14
CD44-218ENST00000525469 NBPF3Q9H094 633 aa7.94□□□□□ -1.14
CD44-218ENST00000525469 ARHGEF12Q9NZN5 1544 aa7.93□□□□□ -1.14
CD44-218ENST00000525469 GRXCR2A6NFK2 248 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms