RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 DAXXQ9UER7 740 aaPredicted RBP12.51□□□□□ -0.41
CPNE3-207ENST00000523588 PARP9Q8IXQ6 854 aa12.5□□□□□ -0.41
CPNE3-207ENST00000523588 CLCN1P35523 988 aa12.49□□□□□ -0.41
CPNE3-207ENST00000523588 ANKK1Q8NFD2 765 aa12.49□□□□□ -0.41
CPNE3-207ENST00000523588 GPCPD1Q9NPB8 672 aa12.49□□□□□ -0.41
CPNE3-207ENST00000523588 TTLL12Q14166 644 aaPredicted RBP12.48□□□□□ -0.41
CPNE3-207ENST00000523588 SOWAHBA6NEL2 793 aa12.47□□□□□ -0.41
CPNE3-207ENST00000523588 HDGFP51858 240 aaKnown RBP12.47□□□□□ -0.41
CPNE3-207ENST00000523588 LRCH3Q96II8 777 aa12.47□□□□□ -0.41
CPNE3-207ENST00000523588 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.47□□□□□ -0.41
CPNE3-207ENST00000523588 BCAMP50895 628 aa12.46□□□□□ -0.41
CPNE3-207ENST00000523588 KCTD12Q96CX2 325 aaKnown RBP12.46□□□□□ -0.41
CPNE3-207ENST00000523588 BRPF1P55201 1214 aaPredicted RBP12.45□□□□□ -0.42
CPNE3-207ENST00000523588 GIGYF2Q6Y7W6 1299 aaKnown RBP12.45□□□□□ -0.42
CPNE3-207ENST00000523588 THSD4Q6ZMP0 1018 aa12.45□□□□□ -0.42
CPNE3-207ENST00000523588 FAM217BQ9NTX9 383 aaPredicted RBP12.45□□□□□ -0.42
CPNE3-207ENST00000523588 GPBP1L1Q9HC44 474 aaPredicted RBP12.44□□□□□ -0.42
CPNE3-207ENST00000523588 SLF2Q8IX21 1173 aa12.43□□□□□ -0.42
CPNE3-207ENST00000523588 SLC10A3P09131 477 aa12.42□□□□□ -0.42
CPNE3-207ENST00000523588 MMRN1Q13201 1228 aa12.42□□□□□ -0.42
CPNE3-207ENST00000523588 DDX11L8A8MPP1 907 aa12.41□□□□□ -0.42
CPNE3-207ENST00000523588 SSTR3P32745 418 aaPredicted RBP12.41□□□□□ -0.42
CPNE3-207ENST00000523588 NEUROD2Q15784 382 aa12.41□□□□□ -0.42
CPNE3-207ENST00000523588 RNF166Q96A37 237 aaPredicted RBP12.41□□□□□ -0.42
CPNE3-207ENST00000523588 KDM4CQ9H3R0 1056 aa12.4□□□□□ -0.42
CPNE3-207ENST00000523588 HPS5Q9UPZ3 1129 aa12.4□□□□□ -0.42
CPNE3-207ENST00000523588 RNF40O75150 1001 aa12.39□□□□□ -0.43
CPNE3-207ENST00000523588 MS4A1P11836 297 aa12.39□□□□□ -0.43
CPNE3-207ENST00000523588 SULF1Q8IWU6 871 aa12.39□□□□□ -0.43
CPNE3-207ENST00000523588 CD46P15529 392 aa12.38□□□□□ -0.43
CPNE3-207ENST00000523588 TSR3Q9UJK0 312 aaKnown RBP12.38□□□□□ -0.43
CPNE3-207ENST00000523588 SLC4A3P48751 1232 aa12.37□□□□□ -0.43
CPNE3-207ENST00000523588 WBP1LQ9NX94 342 aa12.37□□□□□ -0.43
CPNE3-207ENST00000523588 PPP4CP60510 307 aa12.36□□□□□ -0.43
CPNE3-207ENST00000523588 RDH13Q8NBN7 331 aa12.35□□□□□ -0.43
CPNE3-207ENST00000523588 PTPN5P54829 565 aa12.34□□□□□ -0.43
CPNE3-207ENST00000523588 RSPH4AQ5TD94 716 aa12.34□□□□□ -0.43
CPNE3-207ENST00000523588 GCGRP47871 477 aa12.32□□□□□ -0.44
CPNE3-207ENST00000523588 NECTIN2Q92692 538 aa12.32□□□□□ -0.44
CPNE3-207ENST00000523588 CFHP08603 1231 aa12.31□□□□□ -0.44
CPNE3-207ENST00000523588 APLP1P51693 650 aa12.31□□□□□ -0.44
CPNE3-207ENST00000523588 BEGAINQ9BUH8 593 aa12.31□□□□□ -0.44
CPNE3-207ENST00000523588 FAM117AQ9C073 453 aa12.31□□□□□ -0.44
CPNE3-207ENST00000523588 HCSTQ9UBK5 93 aa12.29□□□□□ -0.44
CPNE3-207ENST00000523588 NYAP1Q6ZVC0 841 aa12.27□□□□□ -0.45
CPNE3-207ENST00000523588 PLEKHG3A1L390 1219 aa12.26□□□□□ -0.45
CPNE3-207ENST00000523588 KMT5BQ4FZB7 885 aa12.26□□□□□ -0.45
CPNE3-207ENST00000523588 ACTN4O43707 911 aaKnown RBP12.25□□□□□ -0.45
CPNE3-207ENST00000523588 DDRGK1Q96HY6 314 aa12.25□□□□□ -0.45
CPNE3-207ENST00000523588 KDM4AO75164 1064 aa12.24□□□□□ -0.45
CPNE3-207ENST00000523588 SPIRE2Q8WWL2 714 aa12.24□□□□□ -0.45
CPNE3-207ENST00000523588 PRR14Q9BWN1 585 aa12.24□□□□□ -0.45
CPNE3-207ENST00000523588 FUT2Q10981 343 aa12.22□□□□□ -0.45
CPNE3-207ENST00000523588 IL27Q8NEV9 243 aa12.22□□□□□ -0.45
CPNE3-207ENST00000523588 NUTM1Q86Y26 1132 aa12.21□□□□□ -0.45
CPNE3-207ENST00000523588 TBC1D2Q9BYX2 928 aa12.21□□□□□ -0.45
CPNE3-207ENST00000523588 USP46P62068 366 aa12.2□□□□□ -0.46
CPNE3-207ENST00000523588 HOXA2O43364 376 aa12.18□□□□□ -0.46
CPNE3-207ENST00000523588 ATP6V1AP38606 617 aa12.18□□□□□ -0.46
CPNE3-207ENST00000523588 PCDHB3Q9Y5E6 796 aa12.18□□□□□ -0.46
CPNE3-207ENST00000523588 DIXDC1Q155Q3 683 aa12.17□□□□□ -0.46
CPNE3-207ENST00000523588 PUS10Q3MIT2 529 aaKnown RBP12.17□□□□□ -0.46
CPNE3-207ENST00000523588 MORN1Q5T089 497 aa12.17□□□□□ -0.46
CPNE3-207ENST00000523588 MYSM1Q5VVJ2 828 aa12.17□□□□□ -0.46
CPNE3-207ENST00000523588 HLA-CQ95604 372 aa12.17□□□□□ -0.46
CPNE3-207ENST00000523588 MOXD2PA6NHM9 499 aa12.16□□□□□ -0.46
CPNE3-207ENST00000523588 BLOC1S3Q6QNY0 202 aa12.16□□□□□ -0.46
CPNE3-207ENST00000523588 TJAP1Q5JTD0 557 aa12.15□□□□□ -0.46
CPNE3-207ENST00000523588 RSPH6AQ9H0K4 717 aa12.15□□□□□ -0.46
CPNE3-207ENST00000523588 NDUFV2P19404 249 aa12.14□□□□□ -0.47
CPNE3-207ENST00000523588 GRIPAP1Q4V328 841 aa12.14□□□□□ -0.47
CPNE3-207ENST00000523588 MTRQ99707 1265 aa12.14□□□□□ -0.47
CPNE3-207ENST00000523588 GUCA2AQ02747 115 aa12.13□□□□□ -0.47
CPNE3-207ENST00000523588 SPTLC1O15269 473 aa12.12□□□□□ -0.47
CPNE3-207ENST00000523588 COPS2P61201 443 aa12.12□□□□□ -0.47
CPNE3-207ENST00000523588 SH3D19Q5HYK7 790 aa12.12□□□□□ -0.47
CPNE3-207ENST00000523588 RSBN1LQ6PCB5 846 aaPredicted RBP12.12□□□□□ -0.47
CPNE3-207ENST00000523588 SLC27A5Q9Y2P5 690 aa12.12□□□□□ -0.47
CPNE3-207ENST00000523588 GJA5P36382 358 aa12.11□□□□□ -0.47
CPNE3-207ENST00000523588 RIC3Q7Z5B4 369 aa12.11□□□□□ -0.47
CPNE3-207ENST00000523588 SCUBE3Q8IX30 993 aa12.11□□□□□ -0.47
CPNE3-207ENST00000523588 PCDHGC3Q9UN70 934 aa12.11□□□□□ -0.47
CPNE3-207ENST00000523588 ITGBL1O95965 494 aaPredicted RBP12.1□□□□□ -0.47
CPNE3-207ENST00000523588 SKIV2LQ15477 1246 aaKnown RBP12.1□□□□□ -0.47
CPNE3-207ENST00000523588 ZNF516Q92618 1163 aa12.1□□□□□ -0.47
CPNE3-207ENST00000523588 IL21Q9HBE4 155 aa12.1□□□□□ -0.47
CPNE3-207ENST00000523588 GOPCQ9HD26 462 aa12.1□□□□□ -0.47
CPNE3-207ENST00000523588 POLR3EQ9NVU0 708 aa12.1□□□□□ -0.47
CPNE3-207ENST00000523588 LIMD1Q9UGP4 676 aa12.1□□□□□ -0.47
CPNE3-207ENST00000523588 NR1I2O75469 434 aa12.09□□□□□ -0.47
CPNE3-207ENST00000523588 FDX1P10109 184 aa12.09□□□□□ -0.47
CPNE3-207ENST00000523588 ZPR1O75312 459 aa12.07□□□□□ -0.48
CPNE3-207ENST00000523588 CLK2P49760 499 aaKnown RBP12.07□□□□□ -0.48
CPNE3-207ENST00000523588 THAP11Q96EK4 314 aa12.07□□□□□ -0.48
CPNE3-207ENST00000523588 PCDHB15Q9Y5E8 787 aa12.07□□□□□ -0.48
CPNE3-207ENST00000523588 TUSC1Q2TAM9 212 aa12.06□□□□□ -0.48
CPNE3-207ENST00000523588 PROCA1Q8NCQ7 364 aaPredicted RBP12.06□□□□□ -0.48
CPNE3-207ENST00000523588 TMEM132AQ24JP5 1023 aa12.05□□□□□ -0.48
CPNE3-207ENST00000523588 BRICD5Q6PL45 260 aa12.05□□□□□ -0.48
CPNE3-207ENST00000523588 SALL2Q9Y467 1007 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms