RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 RTN4Q9NQC3 1192 aaKnown RBP12.41□□□□□ -0.42
SDCBP-210ENST00000522843 WBP1LQ9NX94 342 aa12.4□□□□□ -0.42
SDCBP-210ENST00000522843 TRIM6-TRIM34B2RNG4 842 aa12.39□□□□□ -0.43
SDCBP-210ENST00000522843 FAM69CQ0P6D2 419 aa12.39□□□□□ -0.43
SDCBP-210ENST00000522843 SEPT9Q9UHD8 586 aaPredicted RBP12.39□□□□□ -0.43
SDCBP-210ENST00000522843 RBM33Q96EV2 1170 aaKnown RBP12.38□□□□□ -0.43
SDCBP-210ENST00000522843 DIP2BQ9P265 1576 aa12.38□□□□□ -0.43
SDCBP-210ENST00000522843 FAM98CQ17RN3 349 aaKnown RBP12.37□□□□□ -0.43
SDCBP-210ENST00000522843 AMER1Q5JTC6 1135 aaPredicted RBP12.37□□□□□ -0.43
SDCBP-210ENST00000522843 KCNC4Q03721 635 aa12.36□□□□□ -0.43
SDCBP-210ENST00000522843 PRG4Q92954 1404 aaPredicted RBP12.36□□□□□ -0.43
SDCBP-210ENST00000522843 DDX12PQ92771 950 aa12.35□□□□□ -0.43
SDCBP-210ENST00000522843 KDM6BO15054 1643 aa12.35□□□□□ -0.43
SDCBP-210ENST00000522843 MAPKBP1O60336 1514 aa12.35□□□□□ -0.43
SDCBP-210ENST00000522843 TSR3Q9UJK0 312 aaKnown RBP12.34□□□□□ -0.43
SDCBP-210ENST00000522843 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.33□□□□□ -0.44
SDCBP-210ENST00000522843 FHAD1B1AJZ9 1412 aa12.33□□□□□ -0.44
SDCBP-210ENST00000522843 LRCH3Q96II8 777 aa12.32□□□□□ -0.44
SDCBP-210ENST00000522843 ADCY10Q96PN6 1610 aa12.31□□□□□ -0.44
SDCBP-210ENST00000522843 PACS2Q86VP3 889 aa12.31□□□□□ -0.44
SDCBP-210ENST00000522843 HPS5Q9UPZ3 1129 aa12.31□□□□□ -0.44
SDCBP-210ENST00000522843 EN1Q05925 392 aaPredicted RBP12.29□□□□□ -0.44
SDCBP-210ENST00000522843 TSPOAP1O95153 1857 aa12.29□□□□□ -0.44
SDCBP-210ENST00000522843 NBR1Q14596 966 aa12.28□□□□□ -0.44
SDCBP-210ENST00000522843 MAP3K7O43318 606 aa12.27□□□□□ -0.45
SDCBP-210ENST00000522843 TSKSQ9UJT2 592 aa12.27□□□□□ -0.45
SDCBP-210ENST00000522843 TSR1Q2NL82 804 aaKnown RBP12.26□□□□□ -0.45
SDCBP-210ENST00000522843 ADGRL1O94910 1474 aa12.26□□□□□ -0.45
SDCBP-210ENST00000522843 PDIA6Q15084 440 aa12.25□□□□□ -0.45
SDCBP-210ENST00000522843 WRNQ14191 1432 aaPredicted RBP eCLIP12.25□□□□□ -0.45
SDCBP-210ENST00000522843 ERICH3Q5RHP9 1530 aa12.25□□□□□ -0.45
SDCBP-210ENST00000522843 RUSC2Q8N2Y8 1516 aa12.25□□□□□ -0.45
SDCBP-210ENST00000522843 HECW2Q9P2P5 1572 aa12.25□□□□□ -0.45
SDCBP-210ENST00000522843 PPP4CP60510 307 aa12.24□□□□□ -0.45
SDCBP-210ENST00000522843 Q6ZNB5 142 aa12.24□□□□□ -0.45
SDCBP-210ENST00000522843 BBXQ8WY36 941 aaPredicted RBP12.24□□□□□ -0.45
SDCBP-210ENST00000522843 SPDYE16A6NNV3 312 aaPredicted RBP12.23□□□□□ -0.45
SDCBP-210ENST00000522843 PPRC1Q5VV67 1664 aaKnown RBP12.22□□□□□ -0.45
SDCBP-210ENST00000522843 BIVM-ERCC5R4GMW8 1640 aa12.2□□□□□ -0.46
SDCBP-210ENST00000522843 CDCA7LQ96GN5 454 aa12.2□□□□□ -0.46
SDCBP-210ENST00000522843 COL17A1Q9UMD9 1497 aaPredicted RBP12.2□□□□□ -0.46
SDCBP-210ENST00000522843 TOP2BQ02880 1626 aa12.19□□□□□ -0.46
SDCBP-210ENST00000522843 PRSS12P56730 875 aa12.19□□□□□ -0.46
SDCBP-210ENST00000522843 CERKQ8TCT0 537 aa12.18□□□□□ -0.46
SDCBP-210ENST00000522843 SMAPO00193 183 aa12.17□□□□□ -0.46
SDCBP-210ENST00000522843 LAPTM4AQ15012 233 aa12.17□□□□□ -0.46
SDCBP-210ENST00000522843 SAMD7Q7Z3H4 446 aa12.17□□□□□ -0.46
SDCBP-210ENST00000522843 TJAP1Q5JTD0 557 aa12.16□□□□□ -0.46
SDCBP-210ENST00000522843 FAM198AQ9UFP1 575 aa12.15□□□□□ -0.46
SDCBP-210ENST00000522843 E2F4Q16254 413 aa12.14□□□□□ -0.47
SDCBP-210ENST00000522843 TATDN2Q93075 761 aa12.14□□□□□ -0.47
SDCBP-210ENST00000522843 GRXCR2A6NFK2 248 aa12.13□□□□□ -0.47
SDCBP-210ENST00000522843 SPRYD3Q8NCJ5 442 aa12.13□□□□□ -0.47
SDCBP-210ENST00000522843 GLI2P10070 1586 aa12.13□□□□□ -0.47
SDCBP-210ENST00000522843 PRIM1P49642 420 aaKnown RBP12.12□□□□□ -0.47
SDCBP-210ENST00000522843 ARIH1Q9Y4X5 557 aaPredicted RBP12.12□□□□□ -0.47
SDCBP-210ENST00000522843 NBPF26B4DH59 902 aa12.11□□□□□ -0.47
SDCBP-210ENST00000522843 PNMA3Q9UL41 463 aa12.11□□□□□ -0.47
SDCBP-210ENST00000522843 KIAA0586Q9BVV6 1533 aa12.11□□□□□ -0.47
SDCBP-210ENST00000522843 ASXL2Q76L83 1435 aa12.11□□□□□ -0.47
SDCBP-210ENST00000522843 C3orf80F5H4A9 247 aa12.1□□□□□ -0.47
SDCBP-210ENST00000522843 GFRA3O60609 400 aa12.1□□□□□ -0.47
SDCBP-210ENST00000522843 FBXO41Q8TF61 875 aa12.1□□□□□ -0.47
SDCBP-210ENST00000522843 HDGFP51858 240 aaKnown RBP12.09□□□□□ -0.47
SDCBP-210ENST00000522843 MTRQ99707 1265 aa12.09□□□□□ -0.47
SDCBP-210ENST00000522843 IL21Q9HBE4 155 aa12.09□□□□□ -0.47
SDCBP-210ENST00000522843 ABCC2Q92887 1545 aa12.09□□□□□ -0.47
SDCBP-210ENST00000522843 PRKD2Q9BZL6 878 aa12.08□□□□□ -0.48
SDCBP-210ENST00000522843 WDR70Q9NW82 654 aa12.08□□□□□ -0.48
SDCBP-210ENST00000522843 PTPRGP23470 1445 aa12.08□□□□□ -0.48
SDCBP-210ENST00000522843 PLB1Q6P1J6 1458 aa12.07□□□□□ -0.48
SDCBP-210ENST00000522843 OSBPP22059 807 aa12.06□□□□□ -0.48
SDCBP-210ENST00000522843 PPP1R18Q6NYC8 613 aa12.06□□□□□ -0.48
SDCBP-210ENST00000522843 NUDT18Q6ZVK8 323 aa12.06□□□□□ -0.48
SDCBP-210ENST00000522843 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.06□□□□□ -0.48
SDCBP-210ENST00000522843 MAP3K4Q9Y6R4 1608 aa12.05□□□□□ -0.48
SDCBP-210ENST00000522843 TRAF7Q6Q0C0 670 aa12.05□□□□□ -0.48
SDCBP-210ENST00000522843 RBM27Q9P2N5 1060 aaKnown RBP12.05□□□□□ -0.48
SDCBP-210ENST00000522843 CUL7Q14999 1698 aa12.04□□□□□ -0.48
SDCBP-210ENST00000522843 CDHR5Q9HBB8 845 aa12.04□□□□□ -0.48
SDCBP-210ENST00000522843 EPRSP07814 1512 aaKnown RBP12.04□□□□□ -0.48
SDCBP-210ENST00000522843 TTBK1Q5TCY1 1321 aaPredicted RBP12.04□□□□□ -0.48
SDCBP-210ENST00000522843 ZNF516Q92618 1163 aa12.03□□□□□ -0.48
SDCBP-210ENST00000522843 V9GY48 417 aaPredicted RBP12.03□□□□□ -0.48
SDCBP-210ENST00000522843 IGF1RP08069 1367 aa12.03□□□□□ -0.48
SDCBP-210ENST00000522843 UHRF1BP1LA0JNW5 1464 aa12.02□□□□□ -0.48
SDCBP-210ENST00000522843 LCE2BO14633 110 aa12.02□□□□□ -0.49
SDCBP-210ENST00000522843 RNF40O75150 1001 aa12.02□□□□□ -0.49
SDCBP-210ENST00000522843 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.02□□□□□ -0.49
SDCBP-210ENST00000522843 TNIKQ9UKE5 1360 aa12.02□□□□□ -0.49
SDCBP-210ENST00000522843 APLP1P51693 650 aa12.01□□□□□ -0.49
SDCBP-210ENST00000522843 NRG2O14511 850 aaPredicted RBP12□□□□□ -0.49
SDCBP-210ENST00000522843 NECTIN2Q92692 538 aa12□□□□□ -0.49
SDCBP-210ENST00000522843 KDM5BQ9UGL1 1544 aa11.99□□□□□ -0.49
SDCBP-210ENST00000522843 TEX14Q8IWB6 1497 aa11.98□□□□□ -0.49
SDCBP-210ENST00000522843 UACAQ9BZF9 1416 aa11.98□□□□□ -0.49
SDCBP-210ENST00000522843 TTC13Q8NBP0 860 aa11.98□□□□□ -0.49
SDCBP-210ENST00000522843 NKX2-3Q8TAU0 364 aa11.96□□□□□ -0.49
SDCBP-210ENST00000522843 NPDC1Q9NQX5 325 aaPredicted RBP11.96□□□□□ -0.49
SDCBP-210ENST00000522843 DISP1Q96F81 1524 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms