RNA–Protein interactions for RNA: ENST00000521439.1

NUDCD1-204, Transcript of NudC domain containing 1, humanhuman

TSL 1 (best)

Gene NUDCD1, Length 1,172 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD1-204ENST00000521439 OATP04181 439 aa13.82□□□□□ -0.2
NUDCD1-204ENST00000521439 HDGFP51858 240 aaKnown RBP13.82□□□□□ -0.2
NUDCD1-204ENST00000521439 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.82□□□□□ -0.2
NUDCD1-204ENST00000521439 PARP9Q8IXQ6 854 aa13.81□□□□□ -0.2
NUDCD1-204ENST00000521439 BCAMP50895 628 aa13.8□□□□□ -0.2
NUDCD1-204ENST00000521439 PTPN5P54829 565 aa13.8□□□□□ -0.2
NUDCD1-204ENST00000521439 FAM161AQ3B820 660 aa13.8□□□□□ -0.2
NUDCD1-204ENST00000521439 SAMD7Q7Z3H4 446 aa13.8□□□□□ -0.2
NUDCD1-204ENST00000521439 DNAJB2P25686 324 aa13.79□□□□□ -0.2
NUDCD1-204ENST00000521439 IL27Q8NEV9 243 aa13.79□□□□□ -0.2
NUDCD1-204ENST00000521439 TTLL12Q14166 644 aaPredicted RBP13.78□□□□□ -0.2
NUDCD1-204ENST00000521439 PXYLP1Q8TE99 480 aa13.78□□□□□ -0.2
NUDCD1-204ENST00000521439 METTL3Q86U44 580 aaKnown RBP13.77□□□□□ -0.21
NUDCD1-204ENST00000521439 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.75□□□□□ -0.21
NUDCD1-204ENST00000521439 RCCD1A6NED2 376 aa13.75□□□□□ -0.21
NUDCD1-204ENST00000521439 SWT1Q5T5J6 900 aaKnown RBP13.75□□□□□ -0.21
NUDCD1-204ENST00000521439 TSR3Q9UJK0 312 aaKnown RBP13.75□□□□□ -0.21
NUDCD1-204ENST00000521439 SLC4A3P48751 1232 aa13.74□□□□□ -0.21
NUDCD1-204ENST00000521439 PHOX2BQ99453 314 aa13.74□□□□□ -0.21
NUDCD1-204ENST00000521439 FAM117AQ9C073 453 aa13.74□□□□□ -0.21
NUDCD1-204ENST00000521439 HPS5Q9UPZ3 1129 aa13.74□□□□□ -0.21
NUDCD1-204ENST00000521439 NYAP1Q6ZVC0 841 aa13.73□□□□□ -0.21
NUDCD1-204ENST00000521439 TMEM134Q9H6X4 195 aa13.73□□□□□ -0.21
NUDCD1-204ENST00000521439 GIGYF2Q6Y7W6 1299 aaKnown RBP13.72□□□□□ -0.21
NUDCD1-204ENST00000521439 SLF2Q8IX21 1173 aa13.72□□□□□ -0.21
NUDCD1-204ENST00000521439 RNF40O75150 1001 aa13.71□□□□□ -0.21
NUDCD1-204ENST00000521439 CLCN1P35523 988 aa13.71□□□□□ -0.21
NUDCD1-204ENST00000521439 NECTIN2Q92692 538 aa13.71□□□□□ -0.21
NUDCD1-204ENST00000521439 DDRGK1Q96HY6 314 aa13.71□□□□□ -0.21
NUDCD1-204ENST00000521439 REPIN1Q9BWE0 567 aaKnown RBP13.71□□□□□ -0.21
NUDCD1-204ENST00000521439 PPP4CP60510 307 aa13.7□□□□□ -0.22
NUDCD1-204ENST00000521439 TMUB1Q9BVT8 246 aa13.7□□□□□ -0.22
NUDCD1-204ENST00000521439 WBP1LQ9NX94 342 aa13.7□□□□□ -0.22
NUDCD1-204ENST00000521439 MDM2Q00987 491 aaPredicted RBP13.69□□□□□ -0.22
NUDCD1-204ENST00000521439 GPCPD1Q9NPB8 672 aa13.69□□□□□ -0.22
NUDCD1-204ENST00000521439 PLEKHG3A1L390 1219 aa13.66□□□□□ -0.22
NUDCD1-204ENST00000521439 MS4A1P11836 297 aa13.65□□□□□ -0.22
NUDCD1-204ENST00000521439 NLRP7Q8WX94 980 aa13.63□□□□□ -0.23
NUDCD1-204ENST00000521439 SSTR3P32745 418 aaPredicted RBP13.61□□□□□ -0.23
NUDCD1-204ENST00000521439 ERICH6Q7L0X2 663 aa13.59□□□□□ -0.23
NUDCD1-204ENST00000521439 FAM217BQ9NTX9 383 aaPredicted RBP13.59□□□□□ -0.23
NUDCD1-204ENST00000521439 PRR14Q9BWN1 585 aa13.58□□□□□ -0.24
NUDCD1-204ENST00000521439 RSPH4AQ5TD94 716 aa13.57□□□□□ -0.24
NUDCD1-204ENST00000521439 PLA2G2EQ9NZK7 142 aa13.57□□□□□ -0.24
NUDCD1-204ENST00000521439 TIMELESSQ9UNS1 1208 aa13.57□□□□□ -0.24
NUDCD1-204ENST00000521439 GOPCQ9HD26 462 aa13.56□□□□□ -0.24
NUDCD1-204ENST00000521439 APLP1P51693 650 aa13.55□□□□□ -0.24
NUDCD1-204ENST00000521439 SULF1Q8IWU6 871 aa13.55□□□□□ -0.24
NUDCD1-204ENST00000521439 SLC10A3P09131 477 aa13.54□□□□□ -0.24
NUDCD1-204ENST00000521439 KMT5BQ4FZB7 885 aa13.53□□□□□ -0.24
NUDCD1-204ENST00000521439 BEGAINQ9BUH8 593 aa13.53□□□□□ -0.24
NUDCD1-204ENST00000521439 DDX11L8A8MPP1 907 aa13.52□□□□□ -0.25
NUDCD1-204ENST00000521439 ITGBL1O95965 494 aaPredicted RBP13.52□□□□□ -0.25
NUDCD1-204ENST00000521439 CFHP08603 1231 aa13.52□□□□□ -0.25
NUDCD1-204ENST00000521439 RDH13Q8NBN7 331 aa13.51□□□□□ -0.25
NUDCD1-204ENST00000521439 IFFO2Q5TF58 517 aa13.49□□□□□ -0.25
NUDCD1-204ENST00000521439 RSPH6AQ9H0K4 717 aa13.48□□□□□ -0.25
NUDCD1-204ENST00000521439 ACTN4O43707 911 aaKnown RBP13.47□□□□□ -0.25
NUDCD1-204ENST00000521439 SH3D19Q5HYK7 790 aa13.47□□□□□ -0.25
NUDCD1-204ENST00000521439 KCNC4Q03721 635 aa13.46□□□□□ -0.25
NUDCD1-204ENST00000521439 C14orf37Q86TY3 774 aa13.46□□□□□ -0.25
NUDCD1-204ENST00000521439 MTRQ99707 1265 aa13.46□□□□□ -0.25
NUDCD1-204ENST00000521439 PCDHB3Q9Y5E6 796 aa13.46□□□□□ -0.25
NUDCD1-204ENST00000521439 PCMTD1Q96MG8 357 aaPredicted RBP13.45□□□□□ -0.26
NUDCD1-204ENST00000521439 IL21Q9HBE4 155 aa13.45□□□□□ -0.26
NUDCD1-204ENST00000521439 TJAP1Q5JTD0 557 aa13.44□□□□□ -0.26
NUDCD1-204ENST00000521439 CD46P15529 392 aa13.43□□□□□ -0.26
NUDCD1-204ENST00000521439 SKIV2LQ15477 1246 aaKnown RBP13.43□□□□□ -0.26
NUDCD1-204ENST00000521439 GCGRP47871 477 aa13.42□□□□□ -0.26
NUDCD1-204ENST00000521439 DIXDC1Q155Q3 683 aa13.41□□□□□ -0.26
NUDCD1-204ENST00000521439 COPS2P61201 443 aa13.4□□□□□ -0.26
NUDCD1-204ENST00000521439 MYSM1Q5VVJ2 828 aa13.39□□□□□ -0.27
NUDCD1-204ENST00000521439 TBC1D2Q9BYX2 928 aa13.39□□□□□ -0.27
NUDCD1-204ENST00000521439 BLOC1S3Q6QNY0 202 aa13.38□□□□□ -0.27
NUDCD1-204ENST00000521439 POLR3EQ9NVU0 708 aa13.37□□□□□ -0.27
NUDCD1-204ENST00000521439 ZPR1O75312 459 aa13.35□□□□□ -0.27
NUDCD1-204ENST00000521439 FUT2Q10981 343 aa13.35□□□□□ -0.27
NUDCD1-204ENST00000521439 SPIRE2Q8WWL2 714 aa13.35□□□□□ -0.27
NUDCD1-204ENST00000521439 ZNF516Q92618 1163 aa13.35□□□□□ -0.27
NUDCD1-204ENST00000521439 NR1I2O75469 434 aa13.34□□□□□ -0.27
NUDCD1-204ENST00000521439 ATP6V1AP38606 617 aa13.34□□□□□ -0.27
NUDCD1-204ENST00000521439 PROCA1Q8NCQ7 364 aaPredicted RBP13.34□□□□□ -0.27
NUDCD1-204ENST00000521439 A0A0G2JS52 829 aa13.33□□□□□ -0.28
NUDCD1-204ENST00000521439 GRIPAP1Q4V328 841 aa13.33□□□□□ -0.28
NUDCD1-204ENST00000521439 NUTM1Q86Y26 1132 aa13.33□□□□□ -0.28
NUDCD1-204ENST00000521439 ATP1B4Q9UN42 357 aaPredicted RBP13.33□□□□□ -0.28
NUDCD1-204ENST00000521439 KDM4AO75164 1064 aa13.32□□□□□ -0.28
NUDCD1-204ENST00000521439 CLK2P49760 499 aaKnown RBP13.32□□□□□ -0.28
NUDCD1-204ENST00000521439 PUS10Q3MIT2 529 aaKnown RBP13.32□□□□□ -0.28
NUDCD1-204ENST00000521439 USP46P62068 366 aa13.3□□□□□ -0.28
NUDCD1-204ENST00000521439 MORN1Q5T089 497 aa13.3□□□□□ -0.28
NUDCD1-204ENST00000521439 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.3□□□□□ -0.28
NUDCD1-204ENST00000521439 RIC3Q7Z5B4 369 aa13.29□□□□□ -0.28
NUDCD1-204ENST00000521439 SCUBE3Q8IX30 993 aa13.28□□□□□ -0.28
NUDCD1-204ENST00000521439 LIMD1Q9UGP4 676 aa13.27□□□□□ -0.29
NUDCD1-204ENST00000521439 SPTLC1O15269 473 aa13.26□□□□□ -0.29
NUDCD1-204ENST00000521439 FLIIQ13045 1269 aa13.26□□□□□ -0.29
NUDCD1-204ENST00000521439 NKX2-3Q8TAU0 364 aa13.26□□□□□ -0.29
NUDCD1-204ENST00000521439 MOXD2PA6NHM9 499 aa13.25□□□□□ -0.29
NUDCD1-204ENST00000521439 TUSC1Q2TAM9 212 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms