RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-222ENST00000520948 MYO5BQ9ULV0 1848 aa27.2■■□□□ 1.95
VEGFA-222ENST00000520948 TMEM94Q12767 1356 aa27.19■■□□□ 1.94
VEGFA-222ENST00000520948 RBM33Q96EV2 1170 aaKnown RBP27.17■■□□□ 1.94
VEGFA-222ENST00000520948 SETD5Q9C0A6 1442 aa27.16■■□□□ 1.94
VEGFA-222ENST00000520948 RPRD2Q5VT52 1461 aaKnown RBP27.16■■□□□ 1.94
VEGFA-222ENST00000520948 KCNA6P17658 529 aa27.15■■□□□ 1.94
VEGFA-222ENST00000520948 TRIM26Q12899 539 aaPredicted RBP27.15■■□□□ 1.94
VEGFA-222ENST00000520948 SLC52A1Q9NWF4 448 aa27.15■■□□□ 1.94
VEGFA-222ENST00000520948 BCANQ96GW7 911 aa27.14■■□□□ 1.94
VEGFA-222ENST00000520948 NWD1Q149M9 1564 aa27.14■■□□□ 1.93
VEGFA-222ENST00000520948 IQGAP3Q86VI3 1631 aa27.13■■□□□ 1.93
VEGFA-222ENST00000520948 NUP155O75694 1391 aa27.12■■□□□ 1.93
VEGFA-222ENST00000520948 PROSER2Q86WR7 435 aaPredicted RBP27.12■■□□□ 1.93
VEGFA-222ENST00000520948 ROBO1Q9Y6N7 1651 aa27.11■■□□□ 1.93
VEGFA-222ENST00000520948 NKTRP30414 1462 aaKnown RBP27.1■■□□□ 1.93
VEGFA-222ENST00000520948 TMEM131LA2VDJ0 1609 aa27.09■■□□□ 1.93
VEGFA-222ENST00000520948 ZFYVE9O95405 1425 aa27.09■■□□□ 1.93
VEGFA-222ENST00000520948 FAM135BQ49AJ0 1406 aa27.09■■□□□ 1.93
VEGFA-222ENST00000520948 E9PCH4 1651 aa27.08■■□□□ 1.92
VEGFA-222ENST00000520948 HRCP23327 699 aa27.07■■□□□ 1.92
VEGFA-222ENST00000520948 RIMS2Q9UQ26 1411 aa27.07■■□□□ 1.92
VEGFA-222ENST00000520948 RAB3GAP2Q9H2M9 1393 aa27.06■■□□□ 1.92
VEGFA-222ENST00000520948 PPP1R15AO75807 674 aaPredicted RBP27.05■■□□□ 1.92
VEGFA-222ENST00000520948 ACIN1Q9UKV3 1341 aaKnown RBP27.05■■□□□ 1.92
VEGFA-222ENST00000520948 CHD2O14647 1828 aaKnown RBP27.04■■□□□ 1.92
VEGFA-222ENST00000520948 PLEKHG1Q9ULL1 1385 aa27.04■■□□□ 1.92
VEGFA-222ENST00000520948 CHGAP10645 457 aaKnown RBP27.02■■□□□ 1.92
VEGFA-222ENST00000520948 TRIM52Q96A61 297 aa27.02■■□□□ 1.92
VEGFA-222ENST00000520948 MSH6P52701 1360 aa27.01■■□□□ 1.91
VEGFA-222ENST00000520948 RGS17Q9UGC6 210 aaPredicted RBP27.01■■□□□ 1.91
VEGFA-222ENST00000520948 NUTM2DQ5VT03 806 aaPredicted RBP26.98■■□□□ 1.91
VEGFA-222ENST00000520948 PHLPP1O60346 1717 aa26.96■■□□□ 1.91
VEGFA-222ENST00000520948 HDGFP51858 240 aaKnown RBP26.96■■□□□ 1.91
VEGFA-222ENST00000520948 SLC4A1APQ9BWU0 796 aaKnown RBP26.92■■□□□ 1.9
VEGFA-222ENST00000520948 SLAIN2Q9P270 581 aa26.92■■□□□ 1.9
VEGFA-222ENST00000520948 ADAMTS13Q76LX8 1427 aa26.91■■□□□ 1.9
VEGFA-222ENST00000520948 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.91■■□□□ 1.9
VEGFA-222ENST00000520948 MPHOSPH9Q99550 1183 aa26.91■■□□□ 1.9
VEGFA-222ENST00000520948 TBX22Q9Y458 520 aa26.91■■□□□ 1.9
VEGFA-222ENST00000520948 DIP2AQ14689 1571 aa26.9■■□□□ 1.9
VEGFA-222ENST00000520948 C14orf37Q86TY3 774 aa26.88■■□□□ 1.89
VEGFA-222ENST00000520948 POTEAQ6S8J7 498 aa26.86■■□□□ 1.89
VEGFA-222ENST00000520948 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.86■■□□□ 1.89
VEGFA-222ENST00000520948 COL16A1Q07092 1604 aaPredicted RBP26.85■■□□□ 1.89
VEGFA-222ENST00000520948 SPHKAPQ2M3C7 1700 aa26.85■■□□□ 1.89
VEGFA-222ENST00000520948 TRPM2O94759 1503 aa26.84■■□□□ 1.89
VEGFA-222ENST00000520948 JCADQ9P266 1359 aa26.82■■□□□ 1.88
VEGFA-222ENST00000520948 NCOA3Q9Y6Q9 1424 aa26.82■■□□□ 1.88
VEGFA-222ENST00000520948 PIK3R4Q99570 1358 aa26.81■■□□□ 1.88
VEGFA-222ENST00000520948 PTPRUQ92729 1446 aa26.8■■□□□ 1.88
VEGFA-222ENST00000520948 NRXN3Q9Y4C0 1643 aa26.79■■□□□ 1.88
VEGFA-222ENST00000520948 FOXD1Q16676 465 aa26.79■■□□□ 1.88
VEGFA-222ENST00000520948 AMOTL2Q9Y2J4 779 aa26.77■■□□□ 1.88
VEGFA-222ENST00000520948 SETD1AO15047 1707 aaKnown RBP26.76■■□□□ 1.88
VEGFA-222ENST00000520948 ATF3P18847 181 aa26.76■■□□□ 1.87
VEGFA-222ENST00000520948 PCGF6Q9BYE7 350 aa26.76■■□□□ 1.87
VEGFA-222ENST00000520948 CADPS2Q86UW7 1296 aa26.75■■□□□ 1.87
VEGFA-222ENST00000520948 C19orf44Q9H6X5 657 aa26.75■■□□□ 1.87
VEGFA-222ENST00000520948 XRN1Q8IZH2 1706 aaKnown RBP26.75■■□□□ 1.87
VEGFA-222ENST00000520948 AHDC1Q5TGY3 1603 aaPredicted RBP26.74■■□□□ 1.87
VEGFA-222ENST00000520948 SETBP1Q9Y6X0 1596 aa26.74■■□□□ 1.87
VEGFA-222ENST00000520948 LRP6O75581 1613 aa26.73■■□□□ 1.87
VEGFA-222ENST00000520948 ZNF326Q5BKZ1 582 aaKnown RBP26.73■■□□□ 1.87
VEGFA-222ENST00000520948 CLTCL1P53675 1640 aa26.72■■□□□ 1.87
VEGFA-222ENST00000520948 SHPRHQ149N8 1683 aa26.7■■□□□ 1.87
VEGFA-222ENST00000520948 ANKRD30BQ9BXX2 1392 aa26.67■■□□□ 1.86
VEGFA-222ENST00000520948 SPATA31A6Q5VVP1 1343 aa26.66■■□□□ 1.86
VEGFA-222ENST00000520948 NEXMIFQ5QGS0 1516 aa26.66■■□□□ 1.86
VEGFA-222ENST00000520948 MEX3CQ5U5Q3 659 aaKnown RBP26.66■■□□□ 1.86
VEGFA-222ENST00000520948 BRINP3Q76B58 766 aa26.66■■□□□ 1.86
VEGFA-222ENST00000520948 METP08581 1390 aa26.66■■□□□ 1.86
VEGFA-222ENST00000520948 KIF1BO60333 1816 aa26.65■■□□□ 1.86
VEGFA-222ENST00000520948 DCCP43146 1447 aa26.65■■□□□ 1.86
VEGFA-222ENST00000520948 ASXL1Q8IXJ9 1541 aa26.64■■□□□ 1.85
VEGFA-222ENST00000520948 NALCNQ8IZF0 1738 aa26.62■■□□□ 1.85
VEGFA-222ENST00000520948 DHX57Q6P158 1386 aaKnown RBP26.61■■□□□ 1.85
VEGFA-222ENST00000520948 MST1RQ04912 1400 aa26.61■■□□□ 1.85
VEGFA-222ENST00000520948 CCDC144AA2RUR9 1427 aa26.6■■□□□ 1.85
VEGFA-222ENST00000520948 NHSL1Q5SYE7 1610 aa26.6■■□□□ 1.85
VEGFA-222ENST00000520948 NUTM2BA6NNL0 878 aaPredicted RBP26.58■■□□□ 1.85
VEGFA-222ENST00000520948 NUTM2EB1AL46 878 aaPredicted RBP26.58■■□□□ 1.85
VEGFA-222ENST00000520948 NUTM2AQ8IVF1 878 aaPredicted RBP26.58■■□□□ 1.85
VEGFA-222ENST00000520948 ADGRL3Q9HAR2 1447 aa26.56■■□□□ 1.84
VEGFA-222ENST00000520948 ZNF772Q68DY9 489 aaPredicted RBP26.54■■□□□ 1.84
VEGFA-222ENST00000520948 SPATA31E1Q6ZUB1 1445 aa26.54■■□□□ 1.84
VEGFA-222ENST00000520948 DDX17Q92841 729 aaKnown RBP26.52■■□□□ 1.84
VEGFA-222ENST00000520948 RPGRIP1LQ68CZ1 1315 aa26.47■■□□□ 1.83
VEGFA-222ENST00000520948 PPLO60437 1756 aa26.46■■□□□ 1.83
VEGFA-222ENST00000520948 LRRC59Q96AG4 307 aaKnown RBP26.45■■□□□ 1.82
VEGFA-222ENST00000520948 PTCH1Q13635 1447 aa26.45■■□□□ 1.82
VEGFA-222ENST00000520948 ROBO2Q9HCK4 1378 aa26.45■■□□□ 1.82
VEGFA-222ENST00000520948 AFF2P51816 1311 aa26.44■■□□□ 1.82
VEGFA-222ENST00000520948 PNPLA6Q8IY17 1366 aa26.44■■□□□ 1.82
VEGFA-222ENST00000520948 C1orf167Q5SNV9 1468 aa26.43■■□□□ 1.82
VEGFA-222ENST00000520948 VGFO15240 615 aaPredicted RBP26.43■■□□□ 1.82
VEGFA-222ENST00000520948 RXRBP28702 533 aa26.43■■□□□ 1.82
VEGFA-222ENST00000520948 RGL3Q3MIN7 710 aa26.42■■□□□ 1.82
VEGFA-222ENST00000520948 IFT172Q9UG01 1749 aa26.4■■□□□ 1.82
VEGFA-222ENST00000520948 C8orf37Q96NL8 207 aa26.4■■□□□ 1.82
VEGFA-222ENST00000520948 UPF1Q92900 1129 aaKnown RBP eCLIP26.39■■□□□ 1.825e-12■□□□□ 9.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms