RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 FOXD4L6Q3SYB3 417 aaPredicted RBP12.7□□□□□ -0.38
PDGFRB-207ENST00000520579 FOXD4L3Q6VB84 417 aaPredicted RBP12.7□□□□□ -0.38
PDGFRB-207ENST00000520579 CHMP5Q9NZZ3 219 aa12.7□□□□□ -0.38
PDGFRB-207ENST00000520579 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.7□□□□□ -0.38
PDGFRB-207ENST00000520579 CENPJQ9HC77 1338 aaPredicted RBP12.69□□□□□ -0.38
PDGFRB-207ENST00000520579 CERS3Q8IU89 383 aa12.69□□□□□ -0.38
PDGFRB-207ENST00000520579 PCDHB15Q9Y5E8 787 aa12.69□□□□□ -0.38
PDGFRB-207ENST00000520579 CHMP7Q8WUX9 453 aaPredicted RBP12.68□□□□□ -0.38
PDGFRB-207ENST00000520579 PPP2R1AP30153 589 aa12.68□□□□□ -0.38
PDGFRB-207ENST00000520579 FAM177BA6PVY3 158 aa12.67□□□□□ -0.38
PDGFRB-207ENST00000520579 TEX14Q8IWB6 1497 aa12.67□□□□□ -0.38
PDGFRB-207ENST00000520579 BCORL1Q5H9F3 1711 aa12.67□□□□□ -0.38
PDGFRB-207ENST00000520579 TEX2Q8IWB9 1127 aa12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 TSC1Q92574 1164 aa12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 ANTXR1Q9H6X2 564 aa12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 TPM2P07951 284 aa12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 RLBP1P12271 317 aa12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 PPP4R3BQ5MIZ7 849 aa12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 CDK13Q14004 1512 aaKnown RBP12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 TMF1P82094 1093 aa12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 SLFN5Q08AF3 891 aa12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 RNF214Q8ND24 703 aa12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 JARID2Q92833 1246 aaPredicted RBP12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 DDX49Q9Y6V7 483 aaKnown RBP12.66□□□□□ -0.38
PDGFRB-207ENST00000520579 IRX3P78415 501 aaPredicted RBP12.65□□□□□ -0.38
PDGFRB-207ENST00000520579 MIA2Q96PC5 1412 aa12.65□□□□□ -0.38
PDGFRB-207ENST00000520579 IGSF3O75054 1194 aa12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 NASPP49321 788 aaPredicted RBP12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 TBC1D32Q96NH3 1257 aa12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 PER1O15534 1290 aaPredicted RBP12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 HNRNPMP52272 730 aaKnown RBP eCLIP12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 CHAMP1Q96JM3 812 aa12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 MAPK8IP3Q9UPT6 1336 aa12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 TNPO1Q92973 898 aaKnown RBP12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 RBM42Q9BTD8 480 aaKnown RBP12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 LNPKQ9C0E8 428 aa12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 DISP3Q9P2K9 1392 aa12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 TOPBP1Q92547 1522 aa12.64□□□□□ -0.39
PDGFRB-207ENST00000520579 PTMAP06454 111 aaKnown RBP12.63□□□□□ -0.39
PDGFRB-207ENST00000520579 TSPY4P0CV99 314 aa12.63□□□□□ -0.39
PDGFRB-207ENST00000520579 TSPY10P0CW01 314 aa12.63□□□□□ -0.39
PDGFRB-207ENST00000520579 PLCB2Q00722 1185 aa12.63□□□□□ -0.39
PDGFRB-207ENST00000520579 ITPRIPQ8IWB1 547 aa12.63□□□□□ -0.39
PDGFRB-207ENST00000520579 CFAP43Q8NDM7 1665 aa12.63□□□□□ -0.39
PDGFRB-207ENST00000520579 APBB1O00213 710 aa12.63□□□□□ -0.39
PDGFRB-207ENST00000520579 FSD2A1L4K1 749 aa12.62□□□□□ -0.39
PDGFRB-207ENST00000520579 POLA1P09884 1462 aaPredicted RBP12.62□□□□□ -0.39
PDGFRB-207ENST00000520579 TMEM51Q9NW97 253 aa12.62□□□□□ -0.39
PDGFRB-207ENST00000520579 UQCRHLA0A096LP55 91 aa12.62□□□□□ -0.39
PDGFRB-207ENST00000520579 UQCRHP07919 91 aa12.62□□□□□ -0.39
PDGFRB-207ENST00000520579 SSFA2P28290 1259 aa12.62□□□□□ -0.39
PDGFRB-207ENST00000520579 CAVIN1Q6NZI2 390 aaKnown RBP12.62□□□□□ -0.39
PDGFRB-207ENST00000520579 DDX11L8A8MPP1 907 aa12.61□□□□□ -0.39
PDGFRB-207ENST00000520579 MCTP1Q6DN14 999 aa12.61□□□□□ -0.39
PDGFRB-207ENST00000520579 NOL8Q76FK4 1167 aaKnown RBP12.61□□□□□ -0.39
PDGFRB-207ENST00000520579 URB2Q14146 1524 aaKnown RBP12.6□□□□□ -0.39
PDGFRB-207ENST00000520579 CGNL1Q0VF96 1302 aa12.6□□□□□ -0.39
PDGFRB-207ENST00000520579 ZBTB22O15209 634 aa12.6□□□□□ -0.39
PDGFRB-207ENST00000520579 SMAP1Q8IYB5 467 aaPredicted RBP12.6□□□□□ -0.39
PDGFRB-207ENST00000520579 RWDD1Q9H446 243 aaPredicted RBP12.6□□□□□ -0.39
PDGFRB-207ENST00000520579 GBP4Q96PP9 640 aa12.59□□□□□ -0.39
PDGFRB-207ENST00000520579 PARD3Q8TEW0 1356 aa12.59□□□□□ -0.39
PDGFRB-207ENST00000520579 ABCC5O15440 1437 aa12.59□□□□□ -0.39
PDGFRB-207ENST00000520579 TSR2Q969E8 191 aaKnown RBP12.59□□□□□ -0.39
PDGFRB-207ENST00000520579 RBM27Q9P2N5 1060 aaKnown RBP12.59□□□□□ -0.39
PDGFRB-207ENST00000520579 MAGI3Q5TCQ9 1506 aa12.58□□□□□ -0.4
PDGFRB-207ENST00000520579 DAPK1P53355 1430 aa12.58□□□□□ -0.4
PDGFRB-207ENST00000520579 CGNQ9P2M7 1197 aaKnown RBP12.58□□□□□ -0.4
PDGFRB-207ENST00000520579 PMFBP1Q8TBY8 1022 aa12.58□□□□□ -0.4
PDGFRB-207ENST00000520579 EFCAB5A4FU69 1503 aa12.57□□□□□ -0.4
PDGFRB-207ENST00000520579 C1orf115Q9H7X2 142 aa12.57□□□□□ -0.4
PDGFRB-207ENST00000520579 BCCIPQ9P287 314 aaKnown RBP eCLIP12.57□□□□□ -0.4
PDGFRB-207ENST00000520579 CBX1P83916 185 aa12.57□□□□□ -0.4
PDGFRB-207ENST00000520579 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.57□□□□□ -0.4
PDGFRB-207ENST00000520579 KIAA1107Q9UPP5 1409 aa12.57□□□□□ -0.4
PDGFRB-207ENST00000520579 GOLGA6L22H0YM25 854 aa12.57□□□□□ -0.4
PDGFRB-207ENST00000520579 RIPK4P57078 832 aa12.57□□□□□ -0.4
PDGFRB-207ENST00000520579 SNAPC4Q5SXM2 1469 aa12.56□□□□□ -0.4
PDGFRB-207ENST00000520579 SMC4Q9NTJ3 1288 aa12.56□□□□□ -0.4
PDGFRB-207ENST00000520579 LAMC3Q9Y6N6 1575 aa12.56□□□□□ -0.4
PDGFRB-207ENST00000520579 ZSCAN30Q86W11 494 aa12.55□□□□□ -0.4
PDGFRB-207ENST00000520579 MAP7D2Q96T17 732 aa12.55□□□□□ -0.4
PDGFRB-207ENST00000520579 CHGAP10645 457 aaKnown RBP12.55□□□□□ -0.4
PDGFRB-207ENST00000520579 SUPT6HQ7KZ85 1726 aaKnown RBP12.55□□□□□ -0.4
PDGFRB-207ENST00000520579 U2SURPO15042 1029 aaKnown RBP12.54□□□□□ -0.4
PDGFRB-207ENST00000520579 CD2BP2O95400 341 aaKnown RBP12.54□□□□□ -0.4
PDGFRB-207ENST00000520579 ELL2O00472 640 aaPredicted RBP12.54□□□□□ -0.4
PDGFRB-207ENST00000520579 ZBTB9Q96C00 473 aa12.53□□□□□ -0.4
PDGFRB-207ENST00000520579 KCNG1Q9UIX4 513 aa12.53□□□□□ -0.4
PDGFRB-207ENST00000520579 HDAC5Q9UQL6 1122 aa12.53□□□□□ -0.4
PDGFRB-207ENST00000520579 SPDYE4A6NLX3 237 aa12.53□□□□□ -0.4
PDGFRB-207ENST00000520579 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.53□□□□□ -0.4
PDGFRB-207ENST00000520579 C17orf53Q8N3J3 647 aaPredicted RBP12.53□□□□□ -0.4
PDGFRB-207ENST00000520579 GAPVD1Q14C86 1478 aa12.53□□□□□ -0.4
PDGFRB-207ENST00000520579 PRPF40AO75400 957 aaKnown RBP12.52□□□□□ -0.4
PDGFRB-207ENST00000520579 ANKRD45Q5TZF3 282 aa12.52□□□□□ -0.4
PDGFRB-207ENST00000520579 CFAP44Q96MT7 982 aa12.52□□□□□ -0.4
PDGFRB-207ENST00000520579 U2AF1L5P0DN76 240 aaPredicted RBP12.52□□□□□ -0.41
PDGFRB-207ENST00000520579 FAM193AP78312 1265 aa12.52□□□□□ -0.41
PDGFRB-207ENST00000520579 U2AF1Q01081 240 aaKnown RBP eCLIP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 380.6 ms