RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 TMEM259Q4ZIN3 620 aa13.7□□□□□ -0.22
LSM1-202ENST00000520286 FBXO31Q5XUX0 539 aaPredicted RBP13.7□□□□□ -0.22
LSM1-202ENST00000520286 MAMSTRQ6ZN01 415 aa13.7□□□□□ -0.22
LSM1-202ENST00000520286 NUTM1Q86Y26 1132 aa13.7□□□□□ -0.22
LSM1-202ENST00000520286 PNMA3Q9UL41 463 aa13.7□□□□□ -0.22
LSM1-202ENST00000520286 TRIM6-TRIM34B2RNG4 842 aa13.69□□□□□ -0.22
LSM1-202ENST00000520286 PPP2R2DQ66LE6 453 aa13.69□□□□□ -0.22
LSM1-202ENST00000520286 FNBP4Q8N3X1 1017 aaPredicted RBP13.69□□□□□ -0.22
LSM1-202ENST00000520286 TATDN2Q93075 761 aa13.69□□□□□ -0.22
LSM1-202ENST00000520286 SNRKQ9NRH2 765 aa13.69□□□□□ -0.22
LSM1-202ENST00000520286 PACS2Q86VP3 889 aa13.68□□□□□ -0.22
LSM1-202ENST00000520286 TMEM134Q9H6X4 195 aa13.68□□□□□ -0.22
LSM1-202ENST00000520286 ZNF777Q9ULD5 760 aaPredicted RBP13.68□□□□□ -0.22
LSM1-202ENST00000520286 SPTLC1O15269 473 aa13.67□□□□□ -0.22
LSM1-202ENST00000520286 TUSC1Q2TAM9 212 aa13.67□□□□□ -0.22
LSM1-202ENST00000520286 COG6Q9Y2V7 657 aa13.67□□□□□ -0.22
LSM1-202ENST00000520286 RSBN1LQ6PCB5 846 aaPredicted RBP13.66□□□□□ -0.22
LSM1-202ENST00000520286 MOXD2PA6NHM9 499 aa13.64□□□□□ -0.23
LSM1-202ENST00000520286 CSPP1Q1MSJ5 1256 aa13.63□□□□□ -0.23
LSM1-202ENST00000520286 SNPHO15079 494 aa13.62□□□□□ -0.23
LSM1-202ENST00000520286 HOXB1P14653 301 aaPredicted RBP13.62□□□□□ -0.23
LSM1-202ENST00000520286 SMAPO00193 183 aa13.61□□□□□ -0.23
LSM1-202ENST00000520286 GJA5P36382 358 aa13.61□□□□□ -0.23
LSM1-202ENST00000520286 PROX2Q3B8N5 592 aa13.61□□□□□ -0.23
LSM1-202ENST00000520286 RDH13Q8NBN7 331 aa13.61□□□□□ -0.23
LSM1-202ENST00000520286 NDUFV2P19404 249 aa13.6□□□□□ -0.23
LSM1-202ENST00000520286 KCNK17Q96T54 332 aa13.6□□□□□ -0.23
LSM1-202ENST00000520286 PODXL2Q9NZ53 605 aa13.59□□□□□ -0.23
LSM1-202ENST00000520286 LILRB3O75022 631 aa13.58□□□□□ -0.24
LSM1-202ENST00000520286 QPCTQ16769 361 aa13.58□□□□□ -0.24
LSM1-202ENST00000520286 MTMR14Q8NCE2 650 aa13.58□□□□□ -0.24
LSM1-202ENST00000520286 CCDC97Q96F63 343 aaPredicted RBP13.57□□□□□ -0.24
LSM1-202ENST00000520286 KCNH8Q96L42 1107 aa13.57□□□□□ -0.24
LSM1-202ENST00000520286 PCDHB15Q9Y5E8 787 aa13.57□□□□□ -0.24
LSM1-202ENST00000520286 KDM4AO75164 1064 aa13.56□□□□□ -0.24
LSM1-202ENST00000520286 SERPINA10Q9UK55 444 aa13.56□□□□□ -0.24
LSM1-202ENST00000520286 ZNF330Q9Y3S2 320 aaPredicted RBP13.56□□□□□ -0.24
LSM1-202ENST00000520286 TRIM26Q12899 539 aaPredicted RBP13.55□□□□□ -0.24
LSM1-202ENST00000520286 NUTM2BA6NNL0 878 aaPredicted RBP13.54□□□□□ -0.24
LSM1-202ENST00000520286 NUTM2EB1AL46 878 aaPredicted RBP13.54□□□□□ -0.24
LSM1-202ENST00000520286 AP1G2O75843 785 aa13.54□□□□□ -0.24
LSM1-202ENST00000520286 RTL5Q5HYW3 569 aaPredicted RBP13.54□□□□□ -0.24
LSM1-202ENST00000520286 RSPH4AQ5TD94 716 aa13.54□□□□□ -0.24
LSM1-202ENST00000520286 NUTM2DQ5VT03 806 aaPredicted RBP13.54□□□□□ -0.24
LSM1-202ENST00000520286 NUTM2AQ8IVF1 878 aaPredicted RBP13.54□□□□□ -0.24
LSM1-202ENST00000520286 GDPD2Q9HCC8 539 aa13.54□□□□□ -0.24
LSM1-202ENST00000520286 KIAA1468Q9P260 1216 aa13.54□□□□□ -0.24
LSM1-202ENST00000520286 SOCS7O14512 581 aa13.52□□□□□ -0.25
LSM1-202ENST00000520286 GCGRP47871 477 aa13.52□□□□□ -0.25
LSM1-202ENST00000520286 USP46P62068 366 aa13.52□□□□□ -0.25
LSM1-202ENST00000520286 PRPF38BQ5VTL8 546 aaKnown RBP13.52□□□□□ -0.25
LSM1-202ENST00000520286 CABLES1Q8TDN4 633 aa13.52□□□□□ -0.25
LSM1-202ENST00000520286 ZBED2Q9BTP6 218 aa13.52□□□□□ -0.25
LSM1-202ENST00000520286 PRM3Q9NNZ6 103 aa13.52□□□□□ -0.25
LSM1-202ENST00000520286 PLSCR2Q9NRY7 297 aa13.52□□□□□ -0.25
LSM1-202ENST00000520286 PDIA4P13667 645 aaKnown RBP13.5□□□□□ -0.25
LSM1-202ENST00000520286 WWC1Q8IX03 1113 aa13.5□□□□□ -0.25
LSM1-202ENST00000520286 HOXA2O43364 376 aa13.49□□□□□ -0.25
LSM1-202ENST00000520286 ZBTB3Q9H5J0 574 aa13.49□□□□□ -0.25
LSM1-202ENST00000520286 USP17L8P0C7I0 530 aa13.48□□□□□ -0.25
LSM1-202ENST00000520286 ABL2P42684 1182 aa13.48□□□□□ -0.25
LSM1-202ENST00000520286 FDX1P10109 184 aa13.47□□□□□ -0.25
LSM1-202ENST00000520286 HRCP23327 699 aa13.47□□□□□ -0.25
LSM1-202ENST00000520286 PSEN2P49810 448 aa13.47□□□□□ -0.25
LSM1-202ENST00000520286 SWT1Q5T5J6 900 aaKnown RBP13.47□□□□□ -0.25
LSM1-202ENST00000520286 SLC10A3P09131 477 aa13.46□□□□□ -0.25
LSM1-202ENST00000520286 TBC1D2BQ9UPU7 963 aa13.46□□□□□ -0.25
LSM1-202ENST00000520286 RABGEF1Q9UJ41 708 aa13.45□□□□□ -0.26
LSM1-202ENST00000520286 HDGFP51858 240 aaKnown RBP13.43□□□□□ -0.26
LSM1-202ENST00000520286 SEPT9Q9UHD8 586 aaPredicted RBP13.43□□□□□ -0.26
LSM1-202ENST00000520286 PCDHGC3Q9UN70 934 aa13.43□□□□□ -0.26
LSM1-202ENST00000520286 GUCA2AQ02747 115 aa13.42□□□□□ -0.26
LSM1-202ENST00000520286 ARHGAP33O14559 1287 aa13.41□□□□□ -0.26
LSM1-202ENST00000520286 HLA-CQ95604 372 aa13.41□□□□□ -0.26
LSM1-202ENST00000520286 SLC4A3P48751 1232 aa13.4□□□□□ -0.26
LSM1-202ENST00000520286 CALR3Q96L12 384 aaKnown RBP13.4□□□□□ -0.26
LSM1-202ENST00000520286 SLC4A5Q9BY07 1137 aa13.4□□□□□ -0.26
LSM1-202ENST00000520286 MTMR2Q13614 643 aa13.39□□□□□ -0.27
LSM1-202ENST00000520286 GJD4Q96KN9 370 aaPredicted RBP13.39□□□□□ -0.27
LSM1-202ENST00000520286 NDUFB9Q9Y6M9 179 aa13.39□□□□□ -0.27
LSM1-202ENST00000520286 POM121CA8CG34 1229 aa13.38□□□□□ -0.27
LSM1-202ENST00000520286 ERBB3P21860 1342 aa13.38□□□□□ -0.27
LSM1-202ENST00000520286 CTDSPL2Q05D32 466 aa13.37□□□□□ -0.27
LSM1-202ENST00000520286 FAM98CQ17RN3 349 aaKnown RBP13.37□□□□□ -0.27
LSM1-202ENST00000520286 VARS2Q5ST30 1063 aaKnown RBP13.37□□□□□ -0.27
LSM1-202ENST00000520286 GLMNQ92990 594 aa13.37□□□□□ -0.27
LSM1-202ENST00000520286 GRIPAP1Q4V328 841 aa13.36□□□□□ -0.27
LSM1-202ENST00000520286 DMRTA1Q5VZB9 504 aa13.36□□□□□ -0.27
LSM1-202ENST00000520286 POTEEQ6S8J3 1075 aa13.36□□□□□ -0.27
LSM1-202ENST00000520286 SLF2Q8IX21 1173 aa13.36□□□□□ -0.27
LSM1-202ENST00000520286 HELBQ8NG08 1087 aaPredicted RBP13.35□□□□□ -0.27
LSM1-202ENST00000520286 TSC1Q92574 1164 aa13.35□□□□□ -0.27
LSM1-202ENST00000520286 AXIN2Q9Y2T1 843 aa13.35□□□□□ -0.27
LSM1-202ENST00000520286 FUT2Q10981 343 aa13.34□□□□□ -0.27
LSM1-202ENST00000520286 HMX1Q9NP08 348 aaPredicted RBP13.34□□□□□ -0.27
LSM1-202ENST00000520286 ZBTB7CA1YPR0 619 aa13.33□□□□□ -0.28
LSM1-202ENST00000520286 SAMD7Q7Z3H4 446 aa13.33□□□□□ -0.28
LSM1-202ENST00000520286 C6orf229H3BNL8 230 aa13.32□□□□□ -0.28
LSM1-202ENST00000520286 CFHP08603 1231 aa13.32□□□□□ -0.28
LSM1-202ENST00000520286 IRF5Q13568 498 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms