RNA–Protein interactions for RNA: ENST00000519684.5

HMGB4-203, Transcript of high mobility group box 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB4, Length 2,343 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-203ENST00000519684 PELP1Q8IZL8 1130 aaKnown RBP11.48□□□□□ -0.57
HMGB4-203ENST00000519684 NPATQ14207 1427 aa11.48□□□□□ -0.57
HMGB4-203ENST00000519684 MYBBP1AQ9BQG0 1328 aaKnown RBP11.46□□□□□ -0.57
HMGB4-203ENST00000519684 FAM69CQ0P6D2 419 aa11.46□□□□□ -0.57
HMGB4-203ENST00000519684 ZMYM4Q5VZL5 1548 aa11.46□□□□□ -0.58
HMGB4-203ENST00000519684 CHGAP10645 457 aaKnown RBP11.46□□□□□ -0.58
HMGB4-203ENST00000519684 CDCA8Q53HL2 280 aa11.46□□□□□ -0.58
HMGB4-203ENST00000519684 TMC1Q8TDI8 760 aa11.46□□□□□ -0.58
HMGB4-203ENST00000519684 CFAP65Q6ZU64 1925 aaKnown RBP11.45□□□□□ -0.58
HMGB4-203ENST00000519684 ZBED9Q6R2W3 1325 aa11.45□□□□□ -0.58
HMGB4-203ENST00000519684 FKBP8Q14318 412 aa11.45□□□□□ -0.58
HMGB4-203ENST00000519684 TSPOAP1O95153 1857 aa11.45□□□□□ -0.58
HMGB4-203ENST00000519684 PPLO60437 1756 aa11.45□□□□□ -0.58
HMGB4-203ENST00000519684 BRD4O60885 1362 aaPredicted RBP11.44□□□□□ -0.58
HMGB4-203ENST00000519684 YEATS2Q9ULM3 1422 aa11.44□□□□□ -0.58
HMGB4-203ENST00000519684 NRXN1Q9ULB1 1477 aa11.43□□□□□ -0.58
HMGB4-203ENST00000519684 NOS1P29475 1434 aa11.43□□□□□ -0.58
HMGB4-203ENST00000519684 SIGLEC1Q9BZZ2 1709 aa11.43□□□□□ -0.58
HMGB4-203ENST00000519684 KDM5AP29375 1690 aaKnown RBP11.43□□□□□ -0.58
HMGB4-203ENST00000519684 ADGRF5Q8IZF2 1346 aa11.42□□□□□ -0.58
HMGB4-203ENST00000519684 SYNMO15061 1565 aa11.42□□□□□ -0.58
HMGB4-203ENST00000519684 PARD3Q8TEW0 1356 aa11.42□□□□□ -0.58
HMGB4-203ENST00000519684 PIK3C2BO00750 1634 aa11.42□□□□□ -0.58
HMGB4-203ENST00000519684 SETBP1Q9Y6X0 1596 aa11.42□□□□□ -0.58
HMGB4-203ENST00000519684 ARHGAP31Q2M1Z3 1444 aa11.42□□□□□ -0.58
HMGB4-203ENST00000519684 RPGRIP1LQ68CZ1 1315 aa11.41□□□□□ -0.58
HMGB4-203ENST00000519684 CFAP70Q5T0N1 1121 aa11.41□□□□□ -0.58
HMGB4-203ENST00000519684 PANK3Q9H999 370 aa11.41□□□□□ -0.58
HMGB4-203ENST00000519684 NLRP13Q86W25 1043 aa11.4□□□□□ -0.58
HMGB4-203ENST00000519684 MYO3AQ8NEV4 1616 aa11.4□□□□□ -0.58
HMGB4-203ENST00000519684 PER1O15534 1290 aaPredicted RBP11.4□□□□□ -0.59
HMGB4-203ENST00000519684 PNISRQ8TF01 805 aaKnown RBP11.4□□□□□ -0.59
HMGB4-203ENST00000519684 REREQ9P2R6 1566 aa11.39□□□□□ -0.59
HMGB4-203ENST00000519684 BCANQ96GW7 911 aa11.38□□□□□ -0.59
HMGB4-203ENST00000519684 PIK3C2GO75747 1445 aa11.38□□□□□ -0.59
HMGB4-203ENST00000519684 PREX1Q8TCU6 1659 aa11.38□□□□□ -0.59
HMGB4-203ENST00000519684 MYOM1P52179 1685 aa11.38□□□□□ -0.59
HMGB4-203ENST00000519684 CC2D1BQ5T0F9 858 aaKnown RBP11.38□□□□□ -0.59
HMGB4-203ENST00000519684 LRPPRCP42704 1394 aaKnown RBP11.37□□□□□ -0.59
HMGB4-203ENST00000519684 KNSTRNQ9Y448 316 aa11.37□□□□□ -0.59
HMGB4-203ENST00000519684 SLC52A1Q9NWF4 448 aa11.36□□□□□ -0.59
HMGB4-203ENST00000519684 NEXMIFQ5QGS0 1516 aa11.36□□□□□ -0.59
HMGB4-203ENST00000519684 AGLP35573 1532 aa11.35□□□□□ -0.59
HMGB4-203ENST00000519684 KIF13AQ9H1H9 1805 aa11.35□□□□□ -0.59
HMGB4-203ENST00000519684 VGFO15240 615 aaPredicted RBP11.35□□□□□ -0.59
HMGB4-203ENST00000519684 C14orf93Q9H972 538 aaKnown RBP11.35□□□□□ -0.59
HMGB4-203ENST00000519684 QRICH2Q9H0J4 1663 aa11.35□□□□□ -0.59
HMGB4-203ENST00000519684 ERVK-7P63135 1459 aa11.35□□□□□ -0.59
HMGB4-203ENST00000519684 CENPJQ9HC77 1338 aaPredicted RBP11.35□□□□□ -0.59
HMGB4-203ENST00000519684 SBNO2Q9Y2G9 1366 aa11.34□□□□□ -0.59
HMGB4-203ENST00000519684 ASXL1Q8IXJ9 1541 aa11.34□□□□□ -0.59
HMGB4-203ENST00000519684 SMG6Q86US8 1419 aaKnown RBP11.34□□□□□ -0.59
HMGB4-203ENST00000519684 ADGRB1O14514 1584 aa11.34□□□□□ -0.59
HMGB4-203ENST00000519684 PPP6R1Q9UPN7 881 aa11.33□□□□□ -0.6
HMGB4-203ENST00000519684 MYO5BQ9ULV0 1848 aa11.33□□□□□ -0.6
HMGB4-203ENST00000519684 CLTCQ00610 1675 aaKnown RBP11.32□□□□□ -0.6
HMGB4-203ENST00000519684 TMEM131LA2VDJ0 1609 aa11.32□□□□□ -0.6
HMGB4-203ENST00000519684 ARHGEF40Q8TER5 1519 aa11.32□□□□□ -0.6
HMGB4-203ENST00000519684 IDI1Q13907 227 aa11.32□□□□□ -0.6
HMGB4-203ENST00000519684 TRAK1Q9UPV9 953 aa11.32□□□□□ -0.6
HMGB4-203ENST00000519684 NUDCQ9Y266 331 aa11.31□□□□□ -0.6
HMGB4-203ENST00000519684 ZFYVE9O95405 1425 aa11.31□□□□□ -0.6
HMGB4-203ENST00000519684 ERICH6BQ5W0A0 696 aa11.31□□□□□ -0.6
HMGB4-203ENST00000519684 INSRP06213 1382 aa11.3□□□□□ -0.6
HMGB4-203ENST00000519684 NPC1L1Q9UHC9 1359 aa11.3□□□□□ -0.6
HMGB4-203ENST00000519684 ARHGEF28Q8N1W1 1705 aaKnown RBP11.3□□□□□ -0.6
HMGB4-203ENST00000519684 AMER1Q5JTC6 1135 aaPredicted RBP11.3□□□□□ -0.6
HMGB4-203ENST00000519684 NUTM2DQ5VT03 806 aaPredicted RBP11.3□□□□□ -0.6
HMGB4-203ENST00000519684 TMEM132EQ6IEE7 984 aa11.29□□□□□ -0.6
HMGB4-203ENST00000519684 IRX6P78412 446 aaPredicted RBP11.29□□□□□ -0.6
HMGB4-203ENST00000519684 STAG3Q9UJ98 1225 aa11.28□□□□□ -0.6
HMGB4-203ENST00000519684 BLMP54132 1417 aaPredicted RBP11.28□□□□□ -0.6
HMGB4-203ENST00000519684 PPP2R1AP30153 589 aa11.27□□□□□ -0.6
HMGB4-203ENST00000519684 FBXO31Q5XUX0 539 aaPredicted RBP11.26□□□□□ -0.61
HMGB4-203ENST00000519684 SPATA31D1Q6ZQQ2 1576 aa11.26□□□□□ -0.61
HMGB4-203ENST00000519684 WDR43Q15061 677 aaKnown RBP eCLIP11.26□□□□□ -0.61
HMGB4-203ENST00000519684 ESF1Q9H501 851 aaKnown RBP11.26□□□□□ -0.61
HMGB4-203ENST00000519684 EVC2Q86UK5 1308 aa11.26□□□□□ -0.61
HMGB4-203ENST00000519684 SENP3-EIF4A1A0A087X0R7 540 aa11.25□□□□□ -0.61
HMGB4-203ENST00000519684 PDE3BQ13370 1112 aa11.25□□□□□ -0.61
HMGB4-203ENST00000519684 MLECQ14165 292 aa11.25□□□□□ -0.61
HMGB4-203ENST00000519684 PPP4R2Q9NY27 417 aa11.24□□□□□ -0.61
HMGB4-203ENST00000519684 PUS7Q96PZ0 661 aaKnown RBP11.24□□□□□ -0.61
HMGB4-203ENST00000519684 USP32Q8NFA0 1604 aa11.23□□□□□ -0.61
HMGB4-203ENST00000519684 TULP4Q9NRJ4 1543 aa11.23□□□□□ -0.61
HMGB4-203ENST00000519684 NSD3Q9BZ95 1437 aa11.23□□□□□ -0.61
HMGB4-203ENST00000519684 SALL2Q9Y467 1007 aaPredicted RBP11.23□□□□□ -0.61
HMGB4-203ENST00000519684 ALKQ9UM73 1620 aa11.22□□□□□ -0.61
HMGB4-203ENST00000519684 CARD14Q9BXL6 1004 aa11.22□□□□□ -0.61
HMGB4-203ENST00000519684 STK26Q9P289 416 aa11.22□□□□□ -0.61
HMGB4-203ENST00000519684 A2ML1A8K2U0 1454 aa11.21□□□□□ -0.61
HMGB4-203ENST00000519684 YTHDC2Q9H6S0 1430 aaKnown RBP11.21□□□□□ -0.62
HMGB4-203ENST00000519684 SENP3Q9H4L4 574 aaPredicted RBP11.2□□□□□ -0.62
HMGB4-203ENST00000519684 ADAMTS8Q9UP79 889 aa11.2□□□□□ -0.62
HMGB4-203ENST00000519684 RIMS2Q9UQ26 1411 aa11.2□□□□□ -0.62
HMGB4-203ENST00000519684 SLC12A5Q9H2X9 1139 aa11.2□□□□□ -0.62
HMGB4-203ENST00000519684 RNF123Q5XPI4 1314 aa11.2□□□□□ -0.62
HMGB4-203ENST00000519684 PTPRMP28827 1452 aa11.2□□□□□ -0.62
HMGB4-203ENST00000519684 TSHZ2Q9NRE2 1034 aa11.19□□□□□ -0.62
HMGB4-203ENST00000519684 POGKQ9P215 609 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms