RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 COL16A1Q07092 1604 aaPredicted RBP17.65■□□□□ 0.42
LIMCH1-221ENST00000515785 SPATA31A6Q5VVP1 1343 aa17.65■□□□□ 0.42
LIMCH1-221ENST00000515785 KANK1Q14678 1352 aa17.65■□□□□ 0.42
LIMCH1-221ENST00000515785 NKTRP30414 1462 aaKnown RBP17.63■□□□□ 0.41
LIMCH1-221ENST00000515785 KANK4Q5T7N3 995 aaPredicted RBP17.63■□□□□ 0.41
LIMCH1-221ENST00000515785 NWD1Q149M9 1564 aa17.62■□□□□ 0.41
LIMCH1-221ENST00000515785 MYOM3Q5VTT5 1437 aa17.62■□□□□ 0.41
LIMCH1-221ENST00000515785 KDM5AP29375 1690 aaKnown RBP17.61■□□□□ 0.41
LIMCH1-221ENST00000515785 CHD2O14647 1828 aaKnown RBP17.61■□□□□ 0.41
LIMCH1-221ENST00000515785 PPP1R15AO75807 674 aaPredicted RBP17.6■□□□□ 0.41
LIMCH1-221ENST00000515785 ERBINQ96RT1 1412 aa17.59■□□□□ 0.41
LIMCH1-221ENST00000515785 CHIC2Q9UKJ5 165 aa17.59■□□□□ 0.41
LIMCH1-221ENST00000515785 ADGRB3O60242 1522 aa17.57■□□□□ 0.4
LIMCH1-221ENST00000515785 ABCC5O15440 1437 aa17.57■□□□□ 0.4
LIMCH1-221ENST00000515785 FGD6Q6ZV73 1430 aa17.57■□□□□ 0.4
LIMCH1-221ENST00000515785 ATF3P18847 181 aa17.57■□□□□ 0.4
LIMCH1-221ENST00000515785 MYO5BQ9ULV0 1848 aa17.56■□□□□ 0.4
LIMCH1-221ENST00000515785 AFF2P51816 1311 aa17.56■□□□□ 0.4
LIMCH1-221ENST00000515785 NUTM2DQ5VT03 806 aaPredicted RBP17.56■□□□□ 0.4
LIMCH1-221ENST00000515785 SHPRHQ149N8 1683 aa17.55■□□□□ 0.4
LIMCH1-221ENST00000515785 CADPS2Q86UW7 1296 aa17.55■□□□□ 0.4
LIMCH1-221ENST00000515785 SLC52A1Q9NWF4 448 aa17.55■□□□□ 0.4
LIMCH1-221ENST00000515785 CHGAP10645 457 aaKnown RBP17.54■□□□□ 0.4
LIMCH1-221ENST00000515785 C19orf44Q9H6X5 657 aa17.54■□□□□ 0.4
LIMCH1-221ENST00000515785 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.54■□□□□ 0.4
LIMCH1-221ENST00000515785 NOS1P29475 1434 aa17.54■□□□□ 0.4
LIMCH1-221ENST00000515785 PLEKHG1Q9ULL1 1385 aa17.53■□□□□ 0.4
LIMCH1-221ENST00000515785 HDGFP51858 240 aaKnown RBP17.53■□□□□ 0.4
LIMCH1-221ENST00000515785 TBX22Q9Y458 520 aa17.53■□□□□ 0.4
LIMCH1-221ENST00000515785 RIMS2Q9UQ26 1411 aa17.53■□□□□ 0.4
LIMCH1-221ENST00000515785 CROCC2H7BZ55 1655 aa17.52■□□□□ 0.4
LIMCH1-221ENST00000515785 AHDC1Q5TGY3 1603 aaPredicted RBP17.52■□□□□ 0.4
LIMCH1-221ENST00000515785 QTRT2Q9H974 415 aaKnown RBP17.52■□□□□ 0.4
LIMCH1-221ENST00000515785 LMTK2Q8IWU2 1503 aa17.52■□□□□ 0.39
LIMCH1-221ENST00000515785 BRINP3Q76B58 766 aa17.51■□□□□ 0.39
LIMCH1-221ENST00000515785 CDK12Q9NYV4 1490 aaPredicted RBP17.5■□□□□ 0.39
LIMCH1-221ENST00000515785 ZFYVE9O95405 1425 aa17.5■□□□□ 0.39
LIMCH1-221ENST00000515785 C8orf37Q96NL8 207 aa17.5■□□□□ 0.39
LIMCH1-221ENST00000515785 NCOA3Q9Y6Q9 1424 aa17.49■□□□□ 0.39
LIMCH1-221ENST00000515785 GCC2Q8IWJ2 1684 aa17.48■□□□□ 0.39
LIMCH1-221ENST00000515785 DAPK1P53355 1430 aa17.48■□□□□ 0.39
LIMCH1-221ENST00000515785 PTPN23Q9H3S7 1636 aa17.48■□□□□ 0.39
LIMCH1-221ENST00000515785 RBM6P78332 1123 aaKnown RBP17.48■□□□□ 0.39
LIMCH1-221ENST00000515785 RGS12O14924 1447 aa17.47■□□□□ 0.39
LIMCH1-221ENST00000515785 ANKRD30AQ9BXX3 1397 aa17.47■□□□□ 0.39
LIMCH1-221ENST00000515785 DIP2AQ14689 1571 aa17.47■□□□□ 0.39
LIMCH1-221ENST00000515785 VPS8Q8N3P4 1428 aa17.47■□□□□ 0.39
LIMCH1-221ENST00000515785 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.46■□□□□ 0.39
LIMCH1-221ENST00000515785 DDX17Q92841 729 aaKnown RBP17.46■□□□□ 0.39
LIMCH1-221ENST00000515785 AMOTL2Q9Y2J4 779 aa17.46■□□□□ 0.39
LIMCH1-221ENST00000515785 TMEM131LA2VDJ0 1609 aa17.44■□□□□ 0.38
LIMCH1-221ENST00000515785 ADAMTS13Q76LX8 1427 aa17.44■□□□□ 0.38
LIMCH1-221ENST00000515785 ADAMTS2O95450 1211 aa17.43■□□□□ 0.38
LIMCH1-221ENST00000515785 LRRC59Q96AG4 307 aaKnown RBP17.43■□□□□ 0.38
LIMCH1-221ENST00000515785 NGLY1Q96IV0 654 aa17.43■□□□□ 0.38
LIMCH1-221ENST00000515785 LOC105371045A0A1W2PR82 267 aa17.41■□□□□ 0.38
LIMCH1-221ENST00000515785 ZRANB1Q9UGI0 708 aa17.41■□□□□ 0.38
LIMCH1-221ENST00000515785 PTPRUQ92729 1446 aa17.4■□□□□ 0.38
LIMCH1-221ENST00000515785 CACNB1Q02641 598 aaPredicted RBP17.4■□□□□ 0.38
LIMCH1-221ENST00000515785 ASXL1Q8IXJ9 1541 aa17.4■□□□□ 0.38
LIMCH1-221ENST00000515785 SETD5Q9C0A6 1442 aa17.39■□□□□ 0.38
LIMCH1-221ENST00000515785 PIK3R4Q99570 1358 aa17.39■□□□□ 0.37
LIMCH1-221ENST00000515785 SRCAPQ6ZRS2 3230 aa17.38■□□□□ 0.37
LIMCH1-221ENST00000515785 RPRD2Q5VT52 1461 aaKnown RBP17.37■□□□□ 0.37
LIMCH1-221ENST00000515785 ATAD2Q6PL18 1390 aa17.37■□□□□ 0.37
LIMCH1-221ENST00000515785 NHSL1Q5SYE7 1610 aa17.36■□□□□ 0.37
LIMCH1-221ENST00000515785 APLP2Q06481 763 aa17.36■□□□□ 0.37
LIMCH1-221ENST00000515785 PNPLA6Q8IY17 1366 aa17.36■□□□□ 0.37
LIMCH1-221ENST00000515785 TRPM2O94759 1503 aa17.36■□□□□ 0.37
LIMCH1-221ENST00000515785 MST1RQ04912 1400 aa17.35■□□□□ 0.37
LIMCH1-221ENST00000515785 USP21Q9UK80 565 aa17.34■□□□□ 0.37
LIMCH1-221ENST00000515785 SETBP1Q9Y6X0 1596 aa17.34■□□□□ 0.37
LIMCH1-221ENST00000515785 FAM50AQ14320 339 aaKnown RBP17.33■□□□□ 0.36
LIMCH1-221ENST00000515785 ANKRD50Q9ULJ7 1429 aa17.32■□□□□ 0.36
LIMCH1-221ENST00000515785 DCCP43146 1447 aa17.31■□□□□ 0.36
LIMCH1-221ENST00000515785 TRPC5Q9UL62 973 aaPredicted RBP17.3■□□□□ 0.36
LIMCH1-221ENST00000515785 UNC13BO14795 1591 aa17.3■□□□□ 0.36
LIMCH1-221ENST00000515785 E9PCH4 1651 aa17.29■□□□□ 0.36
LIMCH1-221ENST00000515785 ADGRL2O95490 1459 aa17.28■□□□□ 0.36
LIMCH1-221ENST00000515785 ZNF326Q5BKZ1 582 aaKnown RBP17.27■□□□□ 0.36
LIMCH1-221ENST00000515785 XRN1Q8IZH2 1706 aaKnown RBP17.27■□□□□ 0.35
LIMCH1-221ENST00000515785 METP08581 1390 aa17.27■□□□□ 0.35
LIMCH1-221ENST00000515785 ORAI2Q96SN7 254 aa17.26■□□□□ 0.35
LIMCH1-221ENST00000515785 CCDC125Q86Z20 511 aa17.24■□□□□ 0.35
LIMCH1-221ENST00000515785 FNBP4Q8N3X1 1017 aaPredicted RBP17.24■□□□□ 0.35
LIMCH1-221ENST00000515785 NRXN3Q9Y4C0 1643 aa17.24■□□□□ 0.35
LIMCH1-221ENST00000515785 ADGRL3Q9HAR2 1447 aa17.23■□□□□ 0.35
LIMCH1-221ENST00000515785 NALCNQ8IZF0 1738 aa17.23■□□□□ 0.35
LIMCH1-221ENST00000515785 ATRNO75882 1429 aa17.22■□□□□ 0.35
LIMCH1-221ENST00000515785 C1orf167Q5SNV9 1468 aa17.22■□□□□ 0.35
LIMCH1-221ENST00000515785 SOS2Q07890 1332 aaPredicted RBP17.21■□□□□ 0.34
LIMCH1-221ENST00000515785 PTCH1Q13635 1447 aa17.19■□□□□ 0.34
LIMCH1-221ENST00000515785 NUP155O75694 1391 aa17.18■□□□□ 0.34
LIMCH1-221ENST00000515785 DEFB132Q7Z7B7 95 aa17.18■□□□□ 0.34
LIMCH1-221ENST00000515785 GJD4Q96KN9 370 aaPredicted RBP17.17■□□□□ 0.34
LIMCH1-221ENST00000515785 IQGAP3Q86VI3 1631 aa17.16■□□□□ 0.34
LIMCH1-221ENST00000515785 BCL9LQ86UU0 1499 aa17.16■□□□□ 0.34
LIMCH1-221ENST00000515785 XPCQ01831 940 aaPredicted RBP17.15■□□□□ 0.34
LIMCH1-221ENST00000515785 LAMC1P11047 1609 aa17.14■□□□□ 0.33
LIMCH1-221ENST00000515785 EP400Q96L91 3159 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms