RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 CCER2I3L3R5 266 aa11.7□□□□□ -0.54
RNF4-220ENST00000513578 GGT6Q6P531 493 aa11.7□□□□□ -0.54
RNF4-220ENST00000513578 KDM2AQ9Y2K7 1162 aa11.7□□□□□ -0.54
RNF4-220ENST00000513578 PREX1Q8TCU6 1659 aa11.7□□□□□ -0.54
RNF4-220ENST00000513578 COL17A1Q9UMD9 1497 aaPredicted RBP11.7□□□□□ -0.54
RNF4-220ENST00000513578 RGL3Q3MIN7 710 aa11.69□□□□□ -0.54
RNF4-220ENST00000513578 ZNF326Q5BKZ1 582 aaKnown RBP11.69□□□□□ -0.54
RNF4-220ENST00000513578 SYNMO15061 1565 aa11.69□□□□□ -0.54
RNF4-220ENST00000513578 KIF7Q2M1P5 1343 aa11.68□□□□□ -0.54
RNF4-220ENST00000513578 UGGT1Q9NYU2 1555 aa11.68□□□□□ -0.54
RNF4-220ENST00000513578 C11orf95C9JLR9 678 aaPredicted RBP11.68□□□□□ -0.54
RNF4-220ENST00000513578 RPGRIP1LQ68CZ1 1315 aa11.67□□□□□ -0.54
RNF4-220ENST00000513578 ANP32CO43423 234 aa11.67□□□□□ -0.54
RNF4-220ENST00000513578 CENPBP07199 599 aaPredicted RBP11.67□□□□□ -0.54
RNF4-220ENST00000513578 SETBP1Q9Y6X0 1596 aa11.66□□□□□ -0.54
RNF4-220ENST00000513578 CLTCQ00610 1675 aaKnown RBP11.65□□□□□ -0.55
RNF4-220ENST00000513578 NBPF1Q3BBV0 1214 aa11.64□□□□□ -0.55
RNF4-220ENST00000513578 SLC52A1Q9NWF4 448 aa11.64□□□□□ -0.55
RNF4-220ENST00000513578 SCAF11Q99590 1463 aaKnown RBP11.63□□□□□ -0.55
RNF4-220ENST00000513578 ZFYVE9O95405 1425 aa11.63□□□□□ -0.55
RNF4-220ENST00000513578 ST20-MTHFSA0A0A6YYL1 179 aa11.63□□□□□ -0.55
RNF4-220ENST00000513578 TMEM131LA2VDJ0 1609 aa11.63□□□□□ -0.55
RNF4-220ENST00000513578 MYO3AQ8NEV4 1616 aa11.63□□□□□ -0.55
RNF4-220ENST00000513578 SPATA31D1Q6ZQQ2 1576 aa11.62□□□□□ -0.55
RNF4-220ENST00000513578 MYO5BQ9ULV0 1848 aa11.62□□□□□ -0.55
RNF4-220ENST00000513578 ERVK-7P63135 1459 aa11.62□□□□□ -0.55
RNF4-220ENST00000513578 NEXMIFQ5QGS0 1516 aa11.61□□□□□ -0.55
RNF4-220ENST00000513578 SLC24A1O60721 1099 aa11.61□□□□□ -0.55
RNF4-220ENST00000513578 PIK3C2GO75747 1445 aa11.6□□□□□ -0.55
RNF4-220ENST00000513578 TESK2Q96S53 571 aa11.6□□□□□ -0.55
RNF4-220ENST00000513578 KDM5AP29375 1690 aaKnown RBP11.59□□□□□ -0.55
RNF4-220ENST00000513578 EIF3AQ14152 1382 aaKnown RBP11.58□□□□□ -0.56
RNF4-220ENST00000513578 ADGRF5Q8IZF2 1346 aa11.58□□□□□ -0.56
RNF4-220ENST00000513578 KTN1Q86UP2 1357 aaKnown RBP11.57□□□□□ -0.56
RNF4-220ENST00000513578 C14orf93Q9H972 538 aaKnown RBP11.57□□□□□ -0.56
RNF4-220ENST00000513578 ADGRB1O14514 1584 aa11.57□□□□□ -0.56
RNF4-220ENST00000513578 SBNO2Q9Y2G9 1366 aa11.56□□□□□ -0.56
RNF4-220ENST00000513578 TMF1P82094 1093 aa11.56□□□□□ -0.56
RNF4-220ENST00000513578 IDI1Q13907 227 aa11.56□□□□□ -0.56
RNF4-220ENST00000513578 PRKRIP1Q9H875 184 aaPredicted RBP11.56□□□□□ -0.56
RNF4-220ENST00000513578 VGFO15240 615 aaPredicted RBP11.55□□□□□ -0.56
RNF4-220ENST00000513578 CDCA8Q53HL2 280 aa11.54□□□□□ -0.56
RNF4-220ENST00000513578 CFAP70Q5T0N1 1121 aa11.53□□□□□ -0.56
RNF4-220ENST00000513578 CHGAP10645 457 aaKnown RBP11.52□□□□□ -0.57
RNF4-220ENST00000513578 YTHDC1Q96MU7 727 aaKnown RBP11.52□□□□□ -0.57
RNF4-220ENST00000513578 ZMYM3Q14202 1370 aa11.52□□□□□ -0.57
RNF4-220ENST00000513578 ARHGEF28Q8N1W1 1705 aaKnown RBP11.52□□□□□ -0.57
RNF4-220ENST00000513578 A2ML1A8K2U0 1454 aa11.51□□□□□ -0.57
RNF4-220ENST00000513578 MYOM1P52179 1685 aa11.51□□□□□ -0.57
RNF4-220ENST00000513578 QRICH2Q9H0J4 1663 aa11.51□□□□□ -0.57
RNF4-220ENST00000513578 FBXO31Q5XUX0 539 aaPredicted RBP11.5□□□□□ -0.57
RNF4-220ENST00000513578 PER1O15534 1290 aaPredicted RBP11.49□□□□□ -0.57
RNF4-220ENST00000513578 SETD1AO15047 1707 aaKnown RBP11.49□□□□□ -0.57
RNF4-220ENST00000513578 FER1L4A9Z1Z3 1794 aa11.49□□□□□ -0.57
RNF4-220ENST00000513578 RALBP1Q15311 655 aa11.48□□□□□ -0.57
RNF4-220ENST00000513578 PUS7Q96PZ0 661 aaKnown RBP11.48□□□□□ -0.57
RNF4-220ENST00000513578 ESF1Q9H501 851 aaKnown RBP11.48□□□□□ -0.57
RNF4-220ENST00000513578 UBR1Q8IWV7 1749 aa11.48□□□□□ -0.57
RNF4-220ENST00000513578 C3P01024 1663 aa11.47□□□□□ -0.57
RNF4-220ENST00000513578 ALKQ9UM73 1620 aa11.47□□□□□ -0.57
RNF4-220ENST00000513578 ASXL1Q8IXJ9 1541 aa11.47□□□□□ -0.57
RNF4-220ENST00000513578 PARD3Q8TEW0 1356 aa11.46□□□□□ -0.57
RNF4-220ENST00000513578 CENPJQ9HC77 1338 aaPredicted RBP11.46□□□□□ -0.57
RNF4-220ENST00000513578 DLC1Q96QB1 1528 aa11.45□□□□□ -0.58
RNF4-220ENST00000513578 NLRP1Q9C000 1473 aa11.45□□□□□ -0.58
RNF4-220ENST00000513578 TNRQ92752 1358 aa11.45□□□□□ -0.58
RNF4-220ENST00000513578 NPC1L1Q9UHC9 1359 aa11.45□□□□□ -0.58
RNF4-220ENST00000513578 MLECQ14165 292 aa11.45□□□□□ -0.58
RNF4-220ENST00000513578 POLR3GLQ9BT43 218 aa11.45□□□□□ -0.58
RNF4-220ENST00000513578 RIMS2Q9UQ26 1411 aa11.44□□□□□ -0.58
RNF4-220ENST00000513578 BRD4O60885 1362 aaPredicted RBP11.44□□□□□ -0.58
RNF4-220ENST00000513578 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.44□□□□□ -0.58
RNF4-220ENST00000513578 NRXN3Q9Y4C0 1643 aa11.44□□□□□ -0.58
RNF4-220ENST00000513578 KNDC1Q76NI1 1749 aa11.43□□□□□ -0.58
RNF4-220ENST00000513578 MYBBP1AQ9BQG0 1328 aaKnown RBP11.43□□□□□ -0.58
RNF4-220ENST00000513578 HDGFP51858 240 aaKnown RBP11.43□□□□□ -0.58
RNF4-220ENST00000513578 PANK3Q9H999 370 aa11.43□□□□□ -0.58
RNF4-220ENST00000513578 MRS2Q9HD23 443 aa11.42□□□□□ -0.58
RNF4-220ENST00000513578 STAG3Q9UJ98 1225 aa11.42□□□□□ -0.58
RNF4-220ENST00000513578 PTPRMP28827 1452 aa11.42□□□□□ -0.58
RNF4-220ENST00000513578 USP32Q8NFA0 1604 aa11.42□□□□□ -0.58
RNF4-220ENST00000513578 CCDC184Q52MB2 194 aa11.41□□□□□ -0.58
RNF4-220ENST00000513578 YTHDC2Q9H6S0 1430 aaKnown RBP11.41□□□□□ -0.58
RNF4-220ENST00000513578 INSRP06213 1382 aa11.41□□□□□ -0.58
RNF4-220ENST00000513578 SCAF1Q9H7N4 1312 aaKnown RBP11.4□□□□□ -0.58
RNF4-220ENST00000513578 TRAK1Q9UPV9 953 aa11.4□□□□□ -0.58
RNF4-220ENST00000513578 TULP4Q9NRJ4 1543 aa11.4□□□□□ -0.59
RNF4-220ENST00000513578 TMEM132EQ6IEE7 984 aa11.39□□□□□ -0.59
RNF4-220ENST00000513578 SIRT1Q96EB6 747 aa11.39□□□□□ -0.59
RNF4-220ENST00000513578 ADAMTSL3P82987 1691 aa11.39□□□□□ -0.59
RNF4-220ENST00000513578 SLIT1O75093 1534 aa11.39□□□□□ -0.59
RNF4-220ENST00000513578 LRPPRCP42704 1394 aaKnown RBP11.39□□□□□ -0.59
RNF4-220ENST00000513578 TMEM2Q9UHN6 1383 aa11.39□□□□□ -0.59
RNF4-220ENST00000513578 ARHGAP23Q9P227 1491 aa11.38□□□□□ -0.59
RNF4-220ENST00000513578 NLRP13Q86W25 1043 aa11.38□□□□□ -0.59
RNF4-220ENST00000513578 ABCC11Q96J66 1382 aa11.38□□□□□ -0.59
RNF4-220ENST00000513578 NINLQ9Y2I6 1382 aa11.38□□□□□ -0.59
RNF4-220ENST00000513578 EVC2Q86UK5 1308 aa11.37□□□□□ -0.59
RNF4-220ENST00000513578 AMER1Q5JTC6 1135 aaPredicted RBP11.37□□□□□ -0.59
RNF4-220ENST00000513578 NUTM2DQ5VT03 806 aaPredicted RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms