RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 FOXD4L6Q3SYB3 417 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-218ENST00000513024 FOXD4L3Q6VB84 417 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-218ENST00000513024 NGDNQ8NEJ9 315 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-218ENST00000513024 SPAG9O60271 1321 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-218ENST00000513024 TRIM6-TRIM34B2RNG4 842 aa10.68□□□□□ -0.7
LIMCH1-218ENST00000513024 GOLGA6L19H0YKK7 550 aa10.68□□□□□ -0.7
LIMCH1-218ENST00000513024 RTF1Q92541 710 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-218ENST00000513024 JPH4Q96JJ6 628 aa10.68□□□□□ -0.7
LIMCH1-218ENST00000513024 CEP89Q96ST8 783 aa10.68□□□□□ -0.7
LIMCH1-218ENST00000513024 RBM10P98175 930 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-218ENST00000513024 CLSTN1O94985 981 aa10.67□□□□□ -0.7
LIMCH1-218ENST00000513024 RUFY1Q96T51 708 aa10.67□□□□□ -0.7
LIMCH1-218ENST00000513024 WDR97A6NE52 1622 aa10.67□□□□□ -0.7
LIMCH1-218ENST00000513024 TDRD9Q8NDG6 1382 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-218ENST00000513024 MNS1Q8NEH6 495 aa10.67□□□□□ -0.7
LIMCH1-218ENST00000513024 BBXQ8WY36 941 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 MRE11P49959 708 aa10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 PDE3BQ13370 1112 aa10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 NLRP13Q86W25 1043 aa10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 HOMER1Q86YM7 354 aa10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 MAPKBP1O60336 1514 aa10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 FHOD3Q2V2M9 1422 aa10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 CENPJQ9HC77 1338 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 BECN2A8MW95 431 aa10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 KLHL34Q8N239 644 aa10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 KRI1Q8N9T8 703 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 BRPF3Q9ULD4 1205 aa10.66□□□□□ -0.7
LIMCH1-218ENST00000513024 TIAM1Q13009 1591 aa10.65□□□□□ -0.7
LIMCH1-218ENST00000513024 KIF16BQ96L93 1317 aa10.65□□□□□ -0.7
LIMCH1-218ENST00000513024 HDAC5Q9UQL6 1122 aa10.65□□□□□ -0.7
LIMCH1-218ENST00000513024 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.65□□□□□ -0.7
LIMCH1-218ENST00000513024 PDIA4P13667 645 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-218ENST00000513024 L3MBTL2Q969R5 705 aa10.65□□□□□ -0.7
LIMCH1-218ENST00000513024 POGZQ7Z3K3 1410 aa10.65□□□□□ -0.71
LIMCH1-218ENST00000513024 KIF3BO15066 747 aa10.65□□□□□ -0.71
LIMCH1-218ENST00000513024 ST18O60284 1047 aa10.65□□□□□ -0.71
LIMCH1-218ENST00000513024 TSR1Q2NL82 804 aaKnown RBP10.65□□□□□ -0.71
LIMCH1-218ENST00000513024 CENPQQ7L2Z9 268 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-218ENST00000513024 MPHOSPH9Q99550 1183 aa10.64□□□□□ -0.71
LIMCH1-218ENST00000513024 ISY1Q9ULR0 285 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-218ENST00000513024 GIMAP7Q8NHV1 300 aa10.64□□□□□ -0.71
LIMCH1-218ENST00000513024 MAP3K1Q13233 1512 aa10.64□□□□□ -0.71
LIMCH1-218ENST00000513024 PTPRGP23470 1445 aa10.64□□□□□ -0.71
LIMCH1-218ENST00000513024 CREBRFQ8IUR6 639 aa10.64□□□□□ -0.71
LIMCH1-218ENST00000513024 BCL2L13Q9BXK5 485 aa10.64□□□□□ -0.71
LIMCH1-218ENST00000513024 STK26Q9P289 416 aa10.63□□□□□ -0.71
LIMCH1-218ENST00000513024 CRBNQ96SW2 442 aa10.63□□□□□ -0.71
LIMCH1-218ENST00000513024 ERCC4Q92889 916 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-218ENST00000513024 ROCK2O75116 1388 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-218ENST00000513024 TPM1P09493 284 aa10.62□□□□□ -0.71
LIMCH1-218ENST00000513024 RRP1P56182 461 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-218ENST00000513024 SLC4A10Q6U841 1118 aa10.62□□□□□ -0.71
LIMCH1-218ENST00000513024 PRM3Q9NNZ6 103 aa10.62□□□□□ -0.71
LIMCH1-218ENST00000513024 FGD5Q6ZNL6 1462 aa10.62□□□□□ -0.71
LIMCH1-218ENST00000513024 INCENPQ9NQS7 918 aa10.61□□□□□ -0.71
LIMCH1-218ENST00000513024 CCDC39Q9UFE4 941 aa10.61□□□□□ -0.71
LIMCH1-218ENST00000513024 IFT57Q9NWB7 429 aa10.61□□□□□ -0.71
LIMCH1-218ENST00000513024 RRP7AQ9Y3A4 280 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-218ENST00000513024 NFKBIBQ15653 356 aa10.6□□□□□ -0.71
LIMCH1-218ENST00000513024 IPO7O95373 1038 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-218ENST00000513024 NEXNQ0ZGT2 675 aa10.6□□□□□ -0.71
LIMCH1-218ENST00000513024 ZNF330Q9Y3S2 320 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-218ENST00000513024 KIAA0754O94854 1291 aa10.6□□□□□ -0.71
LIMCH1-218ENST00000513024 PRKRIP1Q9H875 184 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-218ENST00000513024 ATP6V1DQ9Y5K8 247 aa10.6□□□□□ -0.71
LIMCH1-218ENST00000513024 NESP48681 1621 aa10.6□□□□□ -0.71
LIMCH1-218ENST00000513024 COG6Q9Y2V7 657 aa10.6□□□□□ -0.71
LIMCH1-218ENST00000513024 IRX3P78415 501 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-218ENST00000513024 IFT140Q96RY7 1462 aa10.59□□□□□ -0.71
LIMCH1-218ENST00000513024 FMN1Q68DA7 1419 aa10.59□□□□□ -0.71
LIMCH1-218ENST00000513024 SF3A1Q15459 793 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-218ENST00000513024 ANKRD45Q5TZF3 282 aa10.59□□□□□ -0.71
LIMCH1-218ENST00000513024 ZBED9Q6R2W3 1325 aa10.58□□□□□ -0.72
LIMCH1-218ENST00000513024 GOLGA6L7A0A1B0GV03 622 aa10.58□□□□□ -0.72
LIMCH1-218ENST00000513024 STK31Q9BXU1 1019 aa10.58□□□□□ -0.72
LIMCH1-218ENST00000513024 GPATCH11Q8N954 259 aa10.58□□□□□ -0.72
LIMCH1-218ENST00000513024 CWC22Q9HCG8 908 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-218ENST00000513024 CHMP5Q9NZZ3 219 aa10.58□□□□□ -0.72
LIMCH1-218ENST00000513024 FGD6Q6ZV73 1430 aa10.58□□□□□ -0.72
LIMCH1-218ENST00000513024 NASPP49321 788 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-218ENST00000513024 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.57□□□□□ -0.72
LIMCH1-218ENST00000513024 CCDC18Q5T9S5 1454 aa10.57□□□□□ -0.72
LIMCH1-218ENST00000513024 ELL2O00472 640 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-218ENST00000513024 CALCOCO1Q9P1Z2 691 aa10.57□□□□□ -0.72
LIMCH1-218ENST00000513024 TERF2IPQ9NYB0 399 aa10.57□□□□□ -0.72
LIMCH1-218ENST00000513024 ZRSR2Q15696 482 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-218ENST00000513024 PDCL3Q9H2J4 239 aa10.56□□□□□ -0.72
LIMCH1-218ENST00000513024 UACAQ9BZF9 1416 aa10.56□□□□□ -0.72
LIMCH1-218ENST00000513024 CGNQ9P2M7 1197 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-218ENST00000513024 CHMP3Q9Y3E7 222 aa10.56□□□□□ -0.72
LIMCH1-218ENST00000513024 RASSF8Q8NHQ8 419 aa10.56□□□□□ -0.72
LIMCH1-218ENST00000513024 RILPL2Q969X0 211 aa10.56□□□□□ -0.72
LIMCH1-218ENST00000513024 CASKIN1Q8WXD9 1431 aa10.56□□□□□ -0.72
LIMCH1-218ENST00000513024 GORABQ5T7V8 394 aa10.55□□□□□ -0.72
LIMCH1-218ENST00000513024 NUP155O75694 1391 aa10.55□□□□□ -0.72
LIMCH1-218ENST00000513024 PES1O00541 588 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-218ENST00000513024 IPO4Q8TEX9 1081 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-218ENST00000513024 RBM25P49756 843 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-218ENST00000513024 ZNF526Q8TF50 670 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-218ENST00000513024 BCL11BQ9C0K0 894 aaPredicted RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms