RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 MCTP1Q6DN14 999 aa10.92□□□□□ -0.66
VCAN-208ENST00000512590 RBM42Q9BTD8 480 aaKnown RBP10.92□□□□□ -0.66
VCAN-208ENST00000512590 SLKQ9H2G2 1235 aaPredicted RBP10.92□□□□□ -0.66
VCAN-208ENST00000512590 EIF2S2P20042 333 aaKnown RBP10.92□□□□□ -0.66
VCAN-208ENST00000512590 ZSCAN29Q8IWY8 852 aaPredicted RBP10.92□□□□□ -0.66
VCAN-208ENST00000512590 PLIN1O60240 522 aa10.92□□□□□ -0.66
VCAN-208ENST00000512590 CPLX1O14810 134 aa10.91□□□□□ -0.66
VCAN-208ENST00000512590 DDX58O95786 925 aaKnown RBP10.91□□□□□ -0.66
VCAN-208ENST00000512590 C9orf78Q9NZ63 289 aaPredicted RBP10.91□□□□□ -0.66
VCAN-208ENST00000512590 BRMS1Q9HCU9 246 aa10.91□□□□□ -0.66
VCAN-208ENST00000512590 HOMER2Q9NSB8 354 aa10.91□□□□□ -0.66
VCAN-208ENST00000512590 SCRIBQ14160 1630 aa10.91□□□□□ -0.66
VCAN-208ENST00000512590 UQCRHLA0A096LP55 91 aa10.9□□□□□ -0.66
VCAN-208ENST00000512590 NLRP2Q9NX02 1062 aa10.9□□□□□ -0.66
VCAN-208ENST00000512590 KRT18P05783 430 aaKnown RBP10.9□□□□□ -0.66
VCAN-208ENST00000512590 SLC3A2P08195 630 aaKnown RBP10.9□□□□□ -0.66
VCAN-208ENST00000512590 CDR1P51861 262 aa10.9□□□□□ -0.66
VCAN-208ENST00000512590 HOOK1Q9UJC3 728 aaKnown RBP10.9□□□□□ -0.66
VCAN-208ENST00000512590 CCDC173Q0VFZ6 552 aa10.9□□□□□ -0.67
VCAN-208ENST00000512590 EFCAB2Q5VUJ9 269 aa10.9□□□□□ -0.67
VCAN-208ENST00000512590 KIF6Q6ZMV9 814 aa10.9□□□□□ -0.67
VCAN-208ENST00000512590 EIF4G1Q04637 1599 aaKnown RBP10.89□□□□□ -0.67
VCAN-208ENST00000512590 BIN2Q9UBW5 565 aaPredicted RBP10.89□□□□□ -0.67
VCAN-208ENST00000512590 KIF3BO15066 747 aa10.89□□□□□ -0.67
VCAN-208ENST00000512590 CDK5RAP3Q96JB5 506 aa10.89□□□□□ -0.67
VCAN-208ENST00000512590 UQCRHP07919 91 aa10.89□□□□□ -0.67
VCAN-208ENST00000512590 HMGN5P82970 282 aaKnown RBP10.88□□□□□ -0.67
VCAN-208ENST00000512590 B4GALNT3Q6L9W6 998 aa10.88□□□□□ -0.67
VCAN-208ENST00000512590 COG3Q96JB2 828 aa10.88□□□□□ -0.67
VCAN-208ENST00000512590 MIER1Q8N108 512 aa10.88□□□□□ -0.67
VCAN-208ENST00000512590 PTMSP20962 102 aa10.88□□□□□ -0.67
VCAN-208ENST00000512590 ANKRD18AQ8IVF6 992 aa10.87□□□□□ -0.67
VCAN-208ENST00000512590 ANKRD62A6NC57 917 aa10.87□□□□□ -0.67
VCAN-208ENST00000512590 TCERG1O14776 1098 aaKnown RBP10.87□□□□□ -0.67
VCAN-208ENST00000512590 SAFBQ15424 915 aaKnown RBP eCLIP10.87□□□□□ -0.67
VCAN-208ENST00000512590 PABPN1LA6NDY0 278 aaKnown RBP10.86□□□□□ -0.67
VCAN-208ENST00000512590 NEFHP12036 1026 aa10.86□□□□□ -0.67
VCAN-208ENST00000512590 GBP4Q96PP9 640 aa10.86□□□□□ -0.67
VCAN-208ENST00000512590 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.85□□□□□ -0.67
VCAN-208ENST00000512590 EIF3AQ14152 1382 aaKnown RBP10.85□□□□□ -0.67
VCAN-208ENST00000512590 RILPL2Q969X0 211 aa10.85□□□□□ -0.67
VCAN-208ENST00000512590 PROSER2Q86WR7 435 aaPredicted RBP10.85□□□□□ -0.67
VCAN-208ENST00000512590 GNL3LQ9NVN8 582 aaKnown RBP10.85□□□□□ -0.67
VCAN-208ENST00000512590 XBP1P17861 261 aa10.84□□□□□ -0.67
VCAN-208ENST00000512590 PPP4R3AQ6IN85 833 aa10.84□□□□□ -0.67
VCAN-208ENST00000512590 DIAPH3Q9NSV4 1193 aa10.84□□□□□ -0.67
VCAN-208ENST00000512590 LRSAM1Q6UWE0 723 aa10.84□□□□□ -0.67
VCAN-208ENST00000512590 GOLGA6L19H0YKK7 550 aa10.83□□□□□ -0.68
VCAN-208ENST00000512590 IFIT2P09913 472 aaKnown RBP10.83□□□□□ -0.68
VCAN-208ENST00000512590 MYO6Q9UM54 1294 aa10.83□□□□□ -0.68
VCAN-208ENST00000512590 WASHC4Q2M389 1173 aa10.83□□□□□ -0.68
VCAN-208ENST00000512590 RWDD1Q9H446 243 aaPredicted RBP10.83□□□□□ -0.68
VCAN-208ENST00000512590 CARMIL2Q6F5E8 1435 aa10.83□□□□□ -0.68
VCAN-208ENST00000512590 PODXL2Q9NZ53 605 aa10.83□□□□□ -0.68
VCAN-208ENST00000512590 COMMD10Q9Y6G5 202 aa10.83□□□□□ -0.68
VCAN-208ENST00000512590 BECN2A8MW95 431 aa10.82□□□□□ -0.68
VCAN-208ENST00000512590 G3BP1Q13283 466 aaKnown RBP eCLIP10.82□□□□□ -0.68
VCAN-208ENST00000512590 TTC16Q8NEE8 873 aa10.82□□□□□ -0.68
VCAN-208ENST00000512590 RUFY1Q96T51 708 aa10.82□□□□□ -0.68
VCAN-208ENST00000512590 GPS2Q13227 327 aa10.82□□□□□ -0.68
VCAN-208ENST00000512590 NEUROD6Q96NK8 337 aa10.82□□□□□ -0.68
VCAN-208ENST00000512590 TBC1D2BQ9UPU7 963 aa10.82□□□□□ -0.68
VCAN-208ENST00000512590 FAM69CQ0P6D2 419 aa10.81□□□□□ -0.68
VCAN-208ENST00000512590 RIC3Q7Z5B4 369 aa10.81□□□□□ -0.68
VCAN-208ENST00000512590 ERC1Q8IUD2 1116 aa10.81□□□□□ -0.68
VCAN-208ENST00000512590 PSMD1Q99460 953 aa10.81□□□□□ -0.68
VCAN-208ENST00000512590 OSCARQ8IYS5 282 aa10.81□□□□□ -0.68
VCAN-208ENST00000512590 FOXD4L1Q9NU39 408 aa10.81□□□□□ -0.68
VCAN-208ENST00000512590 ZNF76P36508 570 aa10.8□□□□□ -0.68
VCAN-208ENST00000512590 BIRC2Q13490 618 aa10.8□□□□□ -0.68
VCAN-208ENST00000512590 RALYLQ86SE5 291 aaKnown RBP10.8□□□□□ -0.68
VCAN-208ENST00000512590 BBXQ8WY36 941 aaPredicted RBP10.8□□□□□ -0.68
VCAN-208ENST00000512590 SEPT7Q16181 437 aaKnown RBP10.8□□□□□ -0.68
VCAN-208ENST00000512590 RUFY2Q8WXA3 655 aa10.8□□□□□ -0.68
VCAN-208ENST00000512590 NECTIN2Q92692 538 aa10.8□□□□□ -0.68
VCAN-208ENST00000512590 MRPS9P82933 396 aaKnown RBP10.79□□□□□ -0.68
VCAN-208ENST00000512590 EP400NLQ6ZTU2 488 aa10.79□□□□□ -0.68
VCAN-208ENST00000512590 ZCCHC6Q5VYS8 1495 aaKnown RBP10.79□□□□□ -0.68
VCAN-208ENST00000512590 ARID3AQ99856 593 aa10.79□□□□□ -0.68
VCAN-208ENST00000512590 ZHX3Q9H4I2 956 aa10.79□□□□□ -0.68
VCAN-208ENST00000512590 PHF14O94880 888 aa10.79□□□□□ -0.68
VCAN-208ENST00000512590 RGS22Q8NE09 1264 aa10.79□□□□□ -0.68
VCAN-208ENST00000512590 ZBTB24O43167 697 aaPredicted RBP10.78□□□□□ -0.68
VCAN-208ENST00000512590 ZNF219Q9P2Y4 722 aaPredicted RBP10.78□□□□□ -0.68
VCAN-208ENST00000512590 AIMP1Q12904 312 aaKnown RBP10.78□□□□□ -0.68
VCAN-208ENST00000512590 BCL11BQ9C0K0 894 aaPredicted RBP10.78□□□□□ -0.68
VCAN-208ENST00000512590 EZRP15311 586 aaKnown RBP10.78□□□□□ -0.68
VCAN-208ENST00000512590 TNIP1Q15025 636 aa10.78□□□□□ -0.68
VCAN-208ENST00000512590 FOXD4L5Q5VV16 416 aaPredicted RBP10.78□□□□□ -0.68
VCAN-208ENST00000512590 FOXD4L4Q8WXT5 416 aaPredicted RBP10.78□□□□□ -0.68
VCAN-208ENST00000512590 ANO2Q9NQ90 1003 aa10.78□□□□□ -0.68
VCAN-208ENST00000512590 BICDL1Q6ZP65 573 aa10.77□□□□□ -0.68
VCAN-208ENST00000512590 HNRNPMP52272 730 aaKnown RBP eCLIP10.77□□□□□ -0.68
VCAN-208ENST00000512590 SSX2IPQ9Y2D8 614 aa10.77□□□□□ -0.68
VCAN-208ENST00000512590 CHMP5Q9NZZ3 219 aa10.77□□□□□ -0.69
VCAN-208ENST00000512590 CCDC112Q8NEF3 446 aa10.77□□□□□ -0.69
VCAN-208ENST00000512590 ST18O60284 1047 aa10.76□□□□□ -0.69
VCAN-208ENST00000512590 KDM4AO75164 1064 aa10.76□□□□□ -0.69
VCAN-208ENST00000512590 TOM1L2Q6ZVM7 507 aa10.76□□□□□ -0.69
VCAN-208ENST00000512590 GPRASP1Q5JY77 1395 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms