RNA–Protein interactions for RNA: ENST00000512332.5

CPNE4-210, Transcript of copine 4, humanhuman

TSL 1 (best) BASIC

Gene CPNE4, Length 2,230 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-210ENST00000512332 CC2D1BQ5T0F9 858 aaKnown RBP12.34□□□□□ -0.43
CPNE4-210ENST00000512332 CCDC136Q96JN2 1154 aa12.33□□□□□ -0.44
CPNE4-210ENST00000512332 ZNF518AQ6AHZ1 1483 aa12.32□□□□□ -0.44
CPNE4-210ENST00000512332 EFCAB6Q5THR3 1501 aa12.32□□□□□ -0.44
CPNE4-210ENST00000512332 RRP1P56182 461 aaKnown RBP12.32□□□□□ -0.44
CPNE4-210ENST00000512332 AMER1Q5JTC6 1135 aaPredicted RBP12.32□□□□□ -0.44
CPNE4-210ENST00000512332 RCAN3Q9UKA8 241 aa12.32□□□□□ -0.44
CPNE4-210ENST00000512332 KNSTRNQ9Y448 316 aa12.32□□□□□ -0.44
CPNE4-210ENST00000512332 KIDINS220Q9ULH0 1771 aa12.32□□□□□ -0.44
CPNE4-210ENST00000512332 MAP3K4Q9Y6R4 1608 aa12.31□□□□□ -0.44
CPNE4-210ENST00000512332 NRXN1Q9ULB1 1477 aa12.3□□□□□ -0.44
CPNE4-210ENST00000512332 ASXL1Q8IXJ9 1541 aa12.29□□□□□ -0.44
CPNE4-210ENST00000512332 MSH5O43196 834 aa12.29□□□□□ -0.44
CPNE4-210ENST00000512332 KIF1BO60333 1816 aa12.29□□□□□ -0.44
CPNE4-210ENST00000512332 PIK3C2GO75747 1445 aa12.29□□□□□ -0.44
CPNE4-210ENST00000512332 PPP2R1AP30153 589 aa12.29□□□□□ -0.44
CPNE4-210ENST00000512332 MLH3Q9UHC1 1453 aa12.28□□□□□ -0.44
CPNE4-210ENST00000512332 CFAP74Q9C0B2 1584 aa12.28□□□□□ -0.44
CPNE4-210ENST00000512332 MYT1LQ9UL68 1186 aa12.28□□□□□ -0.44
CPNE4-210ENST00000512332 SBNO2Q9Y2G9 1366 aa12.28□□□□□ -0.44
CPNE4-210ENST00000512332 IFT172Q9UG01 1749 aa12.28□□□□□ -0.44
CPNE4-210ENST00000512332 NPM1P06748 294 aaKnown RBP eCLIP12.27□□□□□ -0.44
CPNE4-210ENST00000512332 MYOM1P52179 1685 aa12.27□□□□□ -0.45
CPNE4-210ENST00000512332 KDM5AP29375 1690 aaKnown RBP12.27□□□□□ -0.45
CPNE4-210ENST00000512332 PPRC1Q5VV67 1664 aaKnown RBP12.27□□□□□ -0.45
CPNE4-210ENST00000512332 SENP3-EIF4A1A0A087X0R7 540 aa12.26□□□□□ -0.45
CPNE4-210ENST00000512332 ADAMTS8Q9UP79 889 aa12.26□□□□□ -0.45
CPNE4-210ENST00000512332 ABCA6Q8N139 1617 aa12.26□□□□□ -0.45
CPNE4-210ENST00000512332 POGZQ7Z3K3 1410 aa12.26□□□□□ -0.45
CPNE4-210ENST00000512332 ADGRF5Q8IZF2 1346 aa12.25□□□□□ -0.45
CPNE4-210ENST00000512332 CFAP70Q5T0N1 1121 aa12.25□□□□□ -0.45
CPNE4-210ENST00000512332 OSCARQ8IYS5 282 aa12.25□□□□□ -0.45
CPNE4-210ENST00000512332 CDCA7LQ96GN5 454 aa12.25□□□□□ -0.45
CPNE4-210ENST00000512332 SETBP1Q9Y6X0 1596 aa12.25□□□□□ -0.45
CPNE4-210ENST00000512332 CD109Q6YHK3 1445 aa12.25□□□□□ -0.45
CPNE4-210ENST00000512332 MYO3AQ8NEV4 1616 aa12.25□□□□□ -0.45
CPNE4-210ENST00000512332 UGGT1Q9NYU2 1555 aa12.25□□□□□ -0.45
CPNE4-210ENST00000512332 ADGRB3O60242 1522 aa12.25□□□□□ -0.45
CPNE4-210ENST00000512332 ERVK-7P63135 1459 aa12.24□□□□□ -0.45
CPNE4-210ENST00000512332 SALL2Q9Y467 1007 aaPredicted RBP12.23□□□□□ -0.45
CPNE4-210ENST00000512332 RPGRIP1LQ68CZ1 1315 aa12.23□□□□□ -0.45
CPNE4-210ENST00000512332 ZNF521Q96K83 1311 aa12.23□□□□□ -0.45
CPNE4-210ENST00000512332 WDR43Q15061 677 aaKnown RBP eCLIP12.23□□□□□ -0.45
CPNE4-210ENST00000512332 EXOC6Q8TAG9 804 aa12.23□□□□□ -0.45
CPNE4-210ENST00000512332 FRMPD1Q5SYB0 1578 aa12.22□□□□□ -0.45
CPNE4-210ENST00000512332 NPATQ14207 1427 aa12.22□□□□□ -0.45
CPNE4-210ENST00000512332 HECW2Q9P2P5 1572 aa12.21□□□□□ -0.45
CPNE4-210ENST00000512332 MROH2AA6NES4 1674 aa12.21□□□□□ -0.45
CPNE4-210ENST00000512332 NGEFQ8N5V2 710 aa12.21□□□□□ -0.45
CPNE4-210ENST00000512332 NEO1Q92859 1461 aa12.21□□□□□ -0.45
CPNE4-210ENST00000512332 C14orf93Q9H972 538 aaKnown RBP12.21□□□□□ -0.46
CPNE4-210ENST00000512332 NOS1P29475 1434 aa12.2□□□□□ -0.46
CPNE4-210ENST00000512332 TCERG1O14776 1098 aaKnown RBP12.19□□□□□ -0.46
CPNE4-210ENST00000512332 PLEKHH1Q9ULM0 1364 aa12.19□□□□□ -0.46
CPNE4-210ENST00000512332 PPLO60437 1756 aa12.19□□□□□ -0.46
CPNE4-210ENST00000512332 CENPJQ9HC77 1338 aaPredicted RBP12.19□□□□□ -0.46
CPNE4-210ENST00000512332 DUSP27Q5VZP5 1158 aa12.18□□□□□ -0.46
CPNE4-210ENST00000512332 PUS7Q96PZ0 661 aaKnown RBP12.18□□□□□ -0.46
CPNE4-210ENST00000512332 ABCC3O15438 1527 aa12.18□□□□□ -0.46
CPNE4-210ENST00000512332 MS4A1P11836 297 aa12.18□□□□□ -0.46
CPNE4-210ENST00000512332 GOLGA2Q08379 1002 aa12.18□□□□□ -0.46
CPNE4-210ENST00000512332 PHF23Q9BUL5 403 aaPredicted RBP12.18□□□□□ -0.46
CPNE4-210ENST00000512332 CARD14Q9BXL6 1004 aa12.18□□□□□ -0.46
CPNE4-210ENST00000512332 ADGRB1O14514 1584 aa12.17□□□□□ -0.46
CPNE4-210ENST00000512332 TRMT2AQ8IZ69 625 aaKnown RBP12.17□□□□□ -0.46
CPNE4-210ENST00000512332 ERICH6Q7L0X2 663 aa12.17□□□□□ -0.46
CPNE4-210ENST00000512332 ARHGAP31Q2M1Z3 1444 aa12.16□□□□□ -0.46
CPNE4-210ENST00000512332 POLR3AO14802 1390 aaPredicted RBP12.16□□□□□ -0.46
CPNE4-210ENST00000512332 SLFN5Q08AF3 891 aa12.15□□□□□ -0.46
CPNE4-210ENST00000512332 GGT6Q6P531 493 aa12.15□□□□□ -0.46
CPNE4-210ENST00000512332 PIK3C2BO00750 1634 aa12.14□□□□□ -0.47
CPNE4-210ENST00000512332 ZC3H13Q5T200 1668 aaKnown RBP12.14□□□□□ -0.47
CPNE4-210ENST00000512332 CAMSAP1Q5T5Y3 1602 aa12.14□□□□□ -0.47
CPNE4-210ENST00000512332 VGFO15240 615 aaPredicted RBP12.13□□□□□ -0.47
CPNE4-210ENST00000512332 PLIN1O60240 522 aa12.13□□□□□ -0.47
CPNE4-210ENST00000512332 ANP32AP39687 249 aaKnown RBP12.13□□□□□ -0.47
CPNE4-210ENST00000512332 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.13□□□□□ -0.47
CPNE4-210ENST00000512332 ZFYVE9O95405 1425 aa12.13□□□□□ -0.47
CPNE4-210ENST00000512332 CHGAP10645 457 aaKnown RBP12.13□□□□□ -0.47
CPNE4-210ENST00000512332 CRBNQ96SW2 442 aa12.13□□□□□ -0.47
CPNE4-210ENST00000512332 USP32Q8NFA0 1604 aa12.12□□□□□ -0.47
CPNE4-210ENST00000512332 IPO9Q96P70 1041 aaKnown RBP12.12□□□□□ -0.47
CPNE4-210ENST00000512332 NOP58Q9Y2X3 529 aaKnown RBP12.12□□□□□ -0.47
CPNE4-210ENST00000512332 DIP2CQ9Y2E4 1556 aa12.12□□□□□ -0.47
CPNE4-210ENST00000512332 TRAK1Q9UPV9 953 aa12.11□□□□□ -0.47
CPNE4-210ENST00000512332 QRICH2Q9H0J4 1663 aa12.11□□□□□ -0.47
CPNE4-210ENST00000512332 E9PSI1 815 aa12.11□□□□□ -0.47
CPNE4-210ENST00000512332 APAF1O14727 1248 aa12.11□□□□□ -0.47
CPNE4-210ENST00000512332 SLC52A1Q9NWF4 448 aa12.1□□□□□ -0.47
CPNE4-210ENST00000512332 NKTRP30414 1462 aaKnown RBP12.1□□□□□ -0.47
CPNE4-210ENST00000512332 NEXMIFQ5QGS0 1516 aa12.1□□□□□ -0.47
CPNE4-210ENST00000512332 BACH2Q9BYV9 841 aa12.1□□□□□ -0.47
CPNE4-210ENST00000512332 SIGLEC1Q9BZZ2 1709 aa12.1□□□□□ -0.47
CPNE4-210ENST00000512332 RAPGEF3O95398 923 aa12.09□□□□□ -0.47
CPNE4-210ENST00000512332 PDE4AP27815 886 aa12.09□□□□□ -0.47
CPNE4-210ENST00000512332 NCBP3Q53F19 620 aaKnown RBP12.09□□□□□ -0.47
CPNE4-210ENST00000512332 NSD3Q9BZ95 1437 aa12.09□□□□□ -0.47
CPNE4-210ENST00000512332 CFAP65Q6ZU64 1925 aaKnown RBP12.09□□□□□ -0.47
CPNE4-210ENST00000512332 KDM2BQ8NHM5 1336 aa12.09□□□□□ -0.47
CPNE4-210ENST00000512332 RICTORQ6R327 1708 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms