RNA–Protein interactions for RNA: ENST00000508063.1

PTPN13-207, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 3

Gene PTPN13, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-207ENST00000508063 IQGAP3Q86VI3 1631 aa16.87■□□□□ 0.29
PTPN13-207ENST00000508063 NUP155O75694 1391 aa16.86■□□□□ 0.29
PTPN13-207ENST00000508063 CNKSR2Q8WXI2 1034 aa16.84■□□□□ 0.29
PTPN13-207ENST00000508063 BCANQ96GW7 911 aa16.84■□□□□ 0.29
PTPN13-207ENST00000508063 E9PCH4 1651 aa16.84■□□□□ 0.29
PTPN13-207ENST00000508063 RRBP1Q9P2E9 1410 aaKnown RBP16.83■□□□□ 0.28
PTPN13-207ENST00000508063 PPP1R15AO75807 674 aaPredicted RBP16.82■□□□□ 0.28
PTPN13-207ENST00000508063 KCNA6P17658 529 aa16.82■□□□□ 0.28
PTPN13-207ENST00000508063 HSPA1LP34931 641 aa16.82■□□□□ 0.28
PTPN13-207ENST00000508063 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.82■□□□□ 0.28
PTPN13-207ENST00000508063 SLC26A8Q96RN1 970 aa16.82■□□□□ 0.28
PTPN13-207ENST00000508063 TMEM131LA2VDJ0 1609 aa16.81■□□□□ 0.28
PTPN13-207ENST00000508063 CHGAP10645 457 aaKnown RBP16.81■□□□□ 0.28
PTPN13-207ENST00000508063 RIMS2Q9UQ26 1411 aa16.8■□□□□ 0.28
PTPN13-207ENST00000508063 MYO5BQ9ULV0 1848 aa16.8■□□□□ 0.28
PTPN13-207ENST00000508063 ZFYVE9O95405 1425 aa16.79■□□□□ 0.28
PTPN13-207ENST00000508063 PLEKHG1Q9ULL1 1385 aa16.79■□□□□ 0.28
PTPN13-207ENST00000508063 ALKQ9UM73 1620 aa16.79■□□□□ 0.28
PTPN13-207ENST00000508063 NCBP3Q53F19 620 aaKnown RBP16.77■□□□□ 0.28
PTPN13-207ENST00000508063 PROSER2Q86WR7 435 aaPredicted RBP16.77■□□□□ 0.28
PTPN13-207ENST00000508063 XIRP1Q702N8 1843 aaKnown RBP16.77■□□□□ 0.27
PTPN13-207ENST00000508063 NKTRP30414 1462 aaKnown RBP16.76■□□□□ 0.27
PTPN13-207ENST00000508063 TMEM94Q12767 1356 aa16.76■□□□□ 0.27
PTPN13-207ENST00000508063 NWD1Q149M9 1564 aa16.75■□□□□ 0.27
PTPN13-207ENST00000508063 TBX22Q9Y458 520 aa16.74■□□□□ 0.27
PTPN13-207ENST00000508063 SPHKAPQ2M3C7 1700 aa16.73■□□□□ 0.27
PTPN13-207ENST00000508063 NAIPQ13075 1403 aa16.73■□□□□ 0.27
PTPN13-207ENST00000508063 ILDR2Q71H61 639 aa16.73■□□□□ 0.27
PTPN13-207ENST00000508063 KCNA4P22459 653 aa16.72■□□□□ 0.27
PTPN13-207ENST00000508063 CHD2O14647 1828 aaKnown RBP16.72■□□□□ 0.27
PTPN13-207ENST00000508063 DIP2AQ14689 1571 aa16.71■□□□□ 0.27
PTPN13-207ENST00000508063 MSH6P52701 1360 aa16.7■□□□□ 0.26
PTPN13-207ENST00000508063 FAM135BQ49AJ0 1406 aa16.7■□□□□ 0.26
PTPN13-207ENST00000508063 MED1Q15648 1581 aaPredicted RBP16.69■□□□□ 0.26
PTPN13-207ENST00000508063 PIK3R4Q99570 1358 aa16.69■□□□□ 0.26
PTPN13-207ENST00000508063 NUTM2DQ5VT03 806 aaPredicted RBP16.69■□□□□ 0.26
PTPN13-207ENST00000508063 HFM1A2PYH4 1435 aa16.69■□□□□ 0.26
PTPN13-207ENST00000508063 SOCS7O14512 581 aa16.68■□□□□ 0.26
PTPN13-207ENST00000508063 TRIM52Q96A61 297 aa16.68■□□□□ 0.26
PTPN13-207ENST00000508063 ZNF326Q5BKZ1 582 aaKnown RBP16.67■□□□□ 0.26
PTPN13-207ENST00000508063 RBM33Q96EV2 1170 aaKnown RBP16.67■□□□□ 0.26
PTPN13-207ENST00000508063 ADAMTS13Q76LX8 1427 aa16.67■□□□□ 0.26
PTPN13-207ENST00000508063 NCOA3Q9Y6Q9 1424 aa16.67■□□□□ 0.26
PTPN13-207ENST00000508063 TRPM2O94759 1503 aa16.66■□□□□ 0.26
PTPN13-207ENST00000508063 C14orf37Q86TY3 774 aa16.63■□□□□ 0.25
PTPN13-207ENST00000508063 KIF1BO60333 1816 aa16.63■□□□□ 0.25
PTPN13-207ENST00000508063 CLTCL1P53675 1640 aa16.63■□□□□ 0.25
PTPN13-207ENST00000508063 ROBO1Q9Y6N7 1651 aa16.62■□□□□ 0.25
PTPN13-207ENST00000508063 SLC4A1APQ9BWU0 796 aaKnown RBP16.62■□□□□ 0.25
PTPN13-207ENST00000508063 SLAIN2Q9P270 581 aa16.62■□□□□ 0.25
PTPN13-207ENST00000508063 SETBP1Q9Y6X0 1596 aa16.62■□□□□ 0.25
PTPN13-207ENST00000508063 AMOTL2Q9Y2J4 779 aa16.61■□□□□ 0.25
PTPN13-207ENST00000508063 C19orf44Q9H6X5 657 aa16.6■□□□□ 0.25
PTPN13-207ENST00000508063 ATF3P18847 181 aa16.59■□□□□ 0.25
PTPN13-207ENST00000508063 CADPS2Q86UW7 1296 aa16.59■□□□□ 0.25
PTPN13-207ENST00000508063 ACIN1Q9UKV3 1341 aaKnown RBP16.58■□□□□ 0.24
PTPN13-207ENST00000508063 NEXMIFQ5QGS0 1516 aa16.58■□□□□ 0.24
PTPN13-207ENST00000508063 NRXN3Q9Y4C0 1643 aa16.58■□□□□ 0.24
PTPN13-207ENST00000508063 PTPRUQ92729 1446 aa16.56■□□□□ 0.24
PTPN13-207ENST00000508063 RPGRIP1LQ68CZ1 1315 aa16.56■□□□□ 0.24
PTPN13-207ENST00000508063 VGFO15240 615 aaPredicted RBP16.56■□□□□ 0.24
PTPN13-207ENST00000508063 RNF216Q9NWF9 866 aaPredicted RBP16.56■□□□□ 0.24
PTPN13-207ENST00000508063 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.56■□□□□ 0.24
PTPN13-207ENST00000508063 NPM3O75607 178 aaKnown RBP16.55■□□□□ 0.24
PTPN13-207ENST00000508063 PHLPP1O60346 1717 aa16.54■□□□□ 0.24
PTPN13-207ENST00000508063 XRN1Q8IZH2 1706 aaKnown RBP16.54■□□□□ 0.24
PTPN13-207ENST00000508063 HOXD11P31277 338 aaPredicted RBP16.54■□□□□ 0.24
PTPN13-207ENST00000508063 DCCP43146 1447 aa16.53■□□□□ 0.24
PTPN13-207ENST00000508063 METP08581 1390 aa16.52■□□□□ 0.24
PTPN13-207ENST00000508063 JCADQ9P266 1359 aa16.51■□□□□ 0.23
PTPN13-207ENST00000508063 MPHOSPH9Q99550 1183 aa16.5■□□□□ 0.23
PTPN13-207ENST00000508063 CCDC144AA2RUR9 1427 aa16.5■□□□□ 0.23
PTPN13-207ENST00000508063 PPLO60437 1756 aa16.48■□□□□ 0.23
PTPN13-207ENST00000508063 COL16A1Q07092 1604 aaPredicted RBP16.47■□□□□ 0.23
PTPN13-207ENST00000508063 AHDC1Q5TGY3 1603 aaPredicted RBP16.47■□□□□ 0.23
PTPN13-207ENST00000508063 SETD5Q9C0A6 1442 aa16.45■□□□□ 0.22
PTPN13-207ENST00000508063 ADGRL3Q9HAR2 1447 aa16.45■□□□□ 0.22
PTPN13-207ENST00000508063 BRINP3Q76B58 766 aa16.45■□□□□ 0.22
PTPN13-207ENST00000508063 PTCH1Q13635 1447 aa16.45■□□□□ 0.22
PTPN13-207ENST00000508063 SPATA31A6Q5VVP1 1343 aa16.45■□□□□ 0.22
PTPN13-207ENST00000508063 SETD1AO15047 1707 aaKnown RBP16.44■□□□□ 0.22
PTPN13-207ENST00000508063 MST1RQ04912 1400 aa16.44■□□□□ 0.22
PTPN13-207ENST00000508063 ANKRD30BQ9BXX2 1392 aa16.43■□□□□ 0.22
PTPN13-207ENST00000508063 RGS17Q9UGC6 210 aaPredicted RBP16.43■□□□□ 0.22
PTPN13-207ENST00000508063 PRAG1Q86YV5 1406 aa16.43■□□□□ 0.22
PTPN13-207ENST00000508063 ASXL1Q8IXJ9 1541 aa16.42■□□□□ 0.22
PTPN13-207ENST00000508063 RGL3Q3MIN7 710 aa16.42■□□□□ 0.22
PTPN13-207ENST00000508063 NALCNQ8IZF0 1738 aa16.42■□□□□ 0.22
PTPN13-207ENST00000508063 SPATA31E1Q6ZUB1 1445 aa16.41■□□□□ 0.22
PTPN13-207ENST00000508063 SHPRHQ149N8 1683 aa16.4■□□□□ 0.22
PTPN13-207ENST00000508063 ROBO2Q9HCK4 1378 aa16.39■□□□□ 0.21
PTPN13-207ENST00000508063 MEX3CQ5U5Q3 659 aaKnown RBP16.39■□□□□ 0.21
PTPN13-207ENST00000508063 ADGRF5Q8IZF2 1346 aa16.39■□□□□ 0.21
PTPN13-207ENST00000508063 IFT172Q9UG01 1749 aa16.39■□□□□ 0.21
PTPN13-207ENST00000508063 RAB3GAP2Q9H2M9 1393 aa16.38■□□□□ 0.21
PTPN13-207ENST00000508063 NHSL1Q5SYE7 1610 aa16.37■□□□□ 0.21
PTPN13-207ENST00000508063 LRRC59Q96AG4 307 aaKnown RBP16.37■□□□□ 0.21
PTPN13-207ENST00000508063 C1orf167Q5SNV9 1468 aa16.36■□□□□ 0.21
PTPN13-207ENST00000508063 POTEAQ6S8J7 498 aa16.36■□□□□ 0.21
PTPN13-207ENST00000508063 PIK3C2GO75747 1445 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms