RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 SLIT1O75093 1534 aa29.01■■■□□ 2.23
USP53-203ENST00000507597 VGFO15240 615 aaPredicted RBP29.01■■■□□ 2.23
USP53-203ENST00000507597 SIN3AQ96ST3 1273 aa29.01■■■□□ 2.23
USP53-203ENST00000507597 DMRT2Q9Y5R5 561 aa29■■■□□ 2.23
USP53-203ENST00000507597 SPATA31E1Q6ZUB1 1445 aa29■■■□□ 2.23
USP53-203ENST00000507597 RIMS2Q9UQ26 1411 aa29■■■□□ 2.23
USP53-203ENST00000507597 ARHGAP23Q9P227 1491 aa28.98■■■□□ 2.23
USP53-203ENST00000507597 SCAF11Q99590 1463 aaKnown RBP28.94■■■□□ 2.22
USP53-203ENST00000507597 TONSLQ96HA7 1378 aa28.94■■■□□ 2.22
USP53-203ENST00000507597 TIMELESSQ9UNS1 1208 aa28.94■■■□□ 2.22
USP53-203ENST00000507597 BCANQ96GW7 911 aa28.93■■■□□ 2.22
USP53-203ENST00000507597 ZFYVE9O95405 1425 aa28.92■■■□□ 2.22
USP53-203ENST00000507597 LTKP29376 864 aa28.91■■■□□ 2.22
USP53-203ENST00000507597 NCKAP5LQ9HCH0 1330 aa28.91■■■□□ 2.22
USP53-203ENST00000507597 MYO5BQ9ULV0 1848 aa28.9■■■□□ 2.22
USP53-203ENST00000507597 DCAF11Q8TEB1 546 aa28.9■■■□□ 2.22
USP53-203ENST00000507597 ILDR1Q86SU0 546 aaPredicted RBP28.87■■■□□ 2.21
USP53-203ENST00000507597 NEXMIFQ5QGS0 1516 aa28.87■■■□□ 2.21
USP53-203ENST00000507597 PLEKHG1Q9ULL1 1385 aa28.87■■■□□ 2.21
USP53-203ENST00000507597 NUTM2DQ5VT03 806 aaPredicted RBP28.86■■■□□ 2.21
USP53-203ENST00000507597 MED14O60244 1454 aa28.85■■■□□ 2.21
USP53-203ENST00000507597 KDM2AQ9Y2K7 1162 aa28.85■■■□□ 2.21
USP53-203ENST00000507597 NPHP4O75161 1426 aaPredicted RBP28.85■■■□□ 2.21
USP53-203ENST00000507597 L3MBTL2Q969R5 705 aa28.84■■■□□ 2.21
USP53-203ENST00000507597 POLR1AO95602 1720 aaPredicted RBP28.83■■■□□ 2.21
USP53-203ENST00000507597 MYOM2P54296 1465 aa28.81■■■□□ 2.2
USP53-203ENST00000507597 PPLO60437 1756 aa28.8■■■□□ 2.2
USP53-203ENST00000507597 TBX22Q9Y458 520 aa28.77■■■□□ 2.2
USP53-203ENST00000507597 ADGRF5Q8IZF2 1346 aa28.76■■■□□ 2.19
USP53-203ENST00000507597 STRCQ7RTU9 1775 aa28.75■■■□□ 2.19
USP53-203ENST00000507597 IFT172Q9UG01 1749 aa28.74■■■□□ 2.19
USP53-203ENST00000507597 IQGAP1P46940 1657 aa28.74■■■□□ 2.19
USP53-203ENST00000507597 SLC26A8Q96RN1 970 aa28.71■■■□□ 2.19
USP53-203ENST00000507597 DIP2AQ14689 1571 aa28.71■■■□□ 2.19
USP53-203ENST00000507597 SETBP1Q9Y6X0 1596 aa28.71■■■□□ 2.19
USP53-203ENST00000507597 NRXN1Q9ULB1 1477 aa28.7■■■□□ 2.18
USP53-203ENST00000507597 PIK3C2GO75747 1445 aa28.69■■■□□ 2.18
USP53-203ENST00000507597 PIK3R4Q99570 1358 aa28.68■■■□□ 2.18
USP53-203ENST00000507597 C14orf93Q9H972 538 aaKnown RBP28.68■■■□□ 2.18
USP53-203ENST00000507597 SENP3Q9H4L4 574 aaPredicted RBP28.67■■■□□ 2.18
USP53-203ENST00000507597 ADAMTS13Q76LX8 1427 aa28.65■■■□□ 2.18
USP53-203ENST00000507597 PRAG1Q86YV5 1406 aa28.64■■■□□ 2.18
USP53-203ENST00000507597 CFAP70Q5T0N1 1121 aa28.62■■■□□ 2.17
USP53-203ENST00000507597 LAMC1P11047 1609 aa28.61■■■□□ 2.17
USP53-203ENST00000507597 ALKQ9UM73 1620 aa28.61■■■□□ 2.17
USP53-203ENST00000507597 KCNA6P17658 529 aa28.59■■■□□ 2.17
USP53-203ENST00000507597 ZEB1P37275 1124 aaPredicted RBP28.59■■■□□ 2.17
USP53-203ENST00000507597 NRXN3Q9Y4C0 1643 aa28.57■■■□□ 2.16
USP53-203ENST00000507597 AMOTL2Q9Y2J4 779 aa28.54■■■□□ 2.16
USP53-203ENST00000507597 METP08581 1390 aa28.53■■■□□ 2.16
USP53-203ENST00000507597 KIAA1210Q9ULL0 1709 aa28.53■■■□□ 2.16
USP53-203ENST00000507597 NBPF8Q3BBV2 869 aa28.52■■■□□ 2.16
USP53-203ENST00000507597 ROCK2O75116 1388 aaKnown RBP28.51■■■□□ 2.16
USP53-203ENST00000507597 TMEM132EQ6IEE7 984 aa28.51■■■□□ 2.15
USP53-203ENST00000507597 LRPPRCP42704 1394 aaKnown RBP28.5■■■□□ 2.15
USP53-203ENST00000507597 ZNF335Q9H4Z2 1342 aaPredicted RBP28.48■■■□□ 2.15
USP53-203ENST00000507597 YTHDC2Q9H6S0 1430 aaKnown RBP28.47■■■□□ 2.15
USP53-203ENST00000507597 STK26Q9P289 416 aa28.47■■■□□ 2.15
USP53-203ENST00000507597 ABCC11Q96J66 1382 aa28.47■■■□□ 2.15
USP53-203ENST00000507597 SIRT1Q96EB6 747 aa28.46■■■□□ 2.15
USP53-203ENST00000507597 CPS1P31327 1500 aa28.46■■■□□ 2.15
USP53-203ENST00000507597 NBPF1Q3BBV0 1214 aa28.45■■■□□ 2.14
USP53-203ENST00000507597 PROSER2Q86WR7 435 aaPredicted RBP28.45■■■□□ 2.14
USP53-203ENST00000507597 CARD11Q9BXL7 1154 aa28.45■■■□□ 2.14
USP53-203ENST00000507597 NKTRP30414 1462 aaKnown RBP28.45■■■□□ 2.14
USP53-203ENST00000507597 RALGAPBQ86X10 1494 aa28.45■■■□□ 2.14
USP53-203ENST00000507597 SETD1AO15047 1707 aaKnown RBP28.44■■■□□ 2.14
USP53-203ENST00000507597 CHD2O14647 1828 aaKnown RBP28.44■■■□□ 2.14
USP53-203ENST00000507597 TRPM1Q7Z4N2 1603 aa28.43■■■□□ 2.14
USP53-203ENST00000507597 NWD1Q149M9 1564 aa28.42■■■□□ 2.14
USP53-203ENST00000507597 PTPRUQ92729 1446 aa28.42■■■□□ 2.14
USP53-203ENST00000507597 GPRASP1Q5JY77 1395 aa28.41■■■□□ 2.14
USP53-203ENST00000507597 TRAK1Q9UPV9 953 aa28.41■■■□□ 2.14
USP53-203ENST00000507597 ADGRB1O14514 1584 aa28.41■■■□□ 2.14
USP53-203ENST00000507597 EIF3AQ14152 1382 aaKnown RBP28.4■■■□□ 2.14
USP53-203ENST00000507597 POGKQ9P215 609 aa28.4■■■□□ 2.14
USP53-203ENST00000507597 PTCH1Q13635 1447 aa28.4■■■□□ 2.14
USP53-203ENST00000507597 TECPR2O15040 1411 aa28.39■■■□□ 2.14
USP53-203ENST00000507597 NCOA3Q9Y6Q9 1424 aa28.38■■■□□ 2.13
USP53-203ENST00000507597 ASXL1Q8IXJ9 1541 aa28.37■■■□□ 2.13
USP53-203ENST00000507597 FAM135BQ49AJ0 1406 aa28.36■■■□□ 2.13
USP53-203ENST00000507597 C14orf37Q86TY3 774 aa28.36■■■□□ 2.13
USP53-203ENST00000507597 DLC1Q96QB1 1528 aa28.35■■■□□ 2.13
USP53-203ENST00000507597 XRN1Q8IZH2 1706 aaKnown RBP28.35■■■□□ 2.13
USP53-203ENST00000507597 SLC24A1O60721 1099 aa28.34■■■□□ 2.13
USP53-203ENST00000507597 FBXO41Q8TF61 875 aa28.34■■■□□ 2.13
USP53-203ENST00000507597 KNDC1Q76NI1 1749 aa28.33■■■□□ 2.13
USP53-203ENST00000507597 PRAM1Q96QH2 718 aa28.32■■■□□ 2.12
USP53-203ENST00000507597 ROBO2Q9HCK4 1378 aa28.31■■■□□ 2.12
USP53-203ENST00000507597 LTBP4Q8N2S1 1624 aa28.31■■■□□ 2.12
USP53-203ENST00000507597 TMEM94Q12767 1356 aa28.3■■■□□ 2.12
USP53-203ENST00000507597 LRRC7Q96NW7 1537 aa28.29■■■□□ 2.12
USP53-203ENST00000507597 CENPJQ9HC77 1338 aaPredicted RBP28.28■■■□□ 2.12
USP53-203ENST00000507597 WAPLQ7Z5K2 1190 aa28.27■■■□□ 2.12
USP53-203ENST00000507597 C19orf44Q9H6X5 657 aa28.27■■■□□ 2.12
USP53-203ENST00000507597 STRCP1A6NGW2 1772 aa28.27■■■□□ 2.12
USP53-203ENST00000507597 MSH6P52701 1360 aa28.26■■■□□ 2.12
USP53-203ENST00000507597 CERKQ8TCT0 537 aa28.26■■■□□ 2.11
USP53-203ENST00000507597 EIF4G2P78344 907 aaKnown RBP eCLIP28.25■■■□□ 2.11
USP53-203ENST00000507597 IQSEC2Q5JU85 1478 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms