RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 TSPY10P0CW01 314 aa22.06■■□□□ 1.12
SQSTM1-211ENST00000506690 NLRP1Q9C000 1473 aa22.06■■□□□ 1.12
SQSTM1-211ENST00000506690 BECN1Q14457 450 aa22.05■■□□□ 1.12
SQSTM1-211ENST00000506690 ARHGEF5Q12774 1597 aa22.05■■□□□ 1.12
SQSTM1-211ENST00000506690 MAGI2Q86UL8 1455 aa22.04■■□□□ 1.12
SQSTM1-211ENST00000506690 MYO5CQ9NQX4 1742 aa22.04■■□□□ 1.12
SQSTM1-211ENST00000506690 NKTRP30414 1462 aaKnown RBP22.04■■□□□ 1.12
SQSTM1-211ENST00000506690 PLA2R1Q13018 1463 aa22.04■■□□□ 1.12
SQSTM1-211ENST00000506690 WDR7Q9Y4E6 1490 aa22.04■■□□□ 1.12
SQSTM1-211ENST00000506690 IGHDP01880 384 aa22.04■■□□□ 1.12
SQSTM1-211ENST00000506690 ANTXR1Q9H6X2 564 aa22.03■■□□□ 1.12
SQSTM1-211ENST00000506690 SEC24BO95487 1268 aa22.02■■□□□ 1.12
SQSTM1-211ENST00000506690 RGL3Q3MIN7 710 aa22.02■■□□□ 1.12
SQSTM1-211ENST00000506690 MAPK8IP3Q9UPT6 1336 aa22.01■■□□□ 1.11
SQSTM1-211ENST00000506690 CCDC141Q6ZP82 1450 aa22.01■■□□□ 1.11
SQSTM1-211ENST00000506690 RNF17Q9BXT8 1623 aaKnown RBP22■■□□□ 1.11
SQSTM1-211ENST00000506690 AMER1Q5JTC6 1135 aaPredicted RBP21.99■■□□□ 1.11
SQSTM1-211ENST00000506690 PIK3C2GO75747 1445 aa21.99■■□□□ 1.11
SQSTM1-211ENST00000506690 BCAR3O75815 825 aa21.98■■□□□ 1.11
SQSTM1-211ENST00000506690 SLKQ9H2G2 1235 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-211ENST00000506690 SPINK5Q9NQ38 1064 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-211ENST00000506690 KNSTRNQ9Y448 316 aa21.98■■□□□ 1.11
SQSTM1-211ENST00000506690 ABCC2Q92887 1545 aa21.97■■□□□ 1.11
SQSTM1-211ENST00000506690 CGNL1Q0VF96 1302 aa21.97■■□□□ 1.11
SQSTM1-211ENST00000506690 UNC13BO14795 1591 aa21.96■■□□□ 1.11
SQSTM1-211ENST00000506690 PDE3AQ14432 1141 aa21.96■■□□□ 1.11
SQSTM1-211ENST00000506690 HNRNPMP52272 730 aaKnown RBP eCLIP21.94■■□□□ 1.1
SQSTM1-211ENST00000506690 SYNMO15061 1565 aa21.94■■□□□ 1.1
SQSTM1-211ENST00000506690 FSD2A1L4K1 749 aa21.94■■□□□ 1.1
SQSTM1-211ENST00000506690 NINLQ9Y2I6 1382 aa21.93■■□□□ 1.1
SQSTM1-211ENST00000506690 E9PSI1 815 aa21.93■■□□□ 1.1
SQSTM1-211ENST00000506690 ASXL1Q8IXJ9 1541 aa21.93■■□□□ 1.1
SQSTM1-211ENST00000506690 XRCC6P12956 609 aaKnown RBP eCLIP21.92■■□□□ 1.1
SQSTM1-211ENST00000506690 CLUAP1Q96AJ1 413 aa21.92■■□□□ 1.1
SQSTM1-211ENST00000506690 ZMYM3Q14202 1370 aa21.92■■□□□ 1.1
SQSTM1-211ENST00000506690 PLXNC1O60486 1568 aa21.92■■□□□ 1.1
SQSTM1-211ENST00000506690 CCDC146Q8IYE0 955 aa21.9■■□□□ 1.1
SQSTM1-211ENST00000506690 TBC1D32Q96NH3 1257 aa21.9■■□□□ 1.1
SQSTM1-211ENST00000506690 UHRF1BP1LA0JNW5 1464 aa21.9■■□□□ 1.1
SQSTM1-211ENST00000506690 NPC1L1Q9UHC9 1359 aa21.9■■□□□ 1.1
SQSTM1-211ENST00000506690 APAF1O14727 1248 aa21.9■■□□□ 1.1
SQSTM1-211ENST00000506690 CLCN1P35523 988 aa21.9■■□□□ 1.1
SQSTM1-211ENST00000506690 IQGAP1P46940 1657 aa21.89■■□□□ 1.1
SQSTM1-211ENST00000506690 GOLGA6L3A6NEY3 463 aa21.89■■□□□ 1.09
SQSTM1-211ENST00000506690 TBC1D2Q9BYX2 928 aa21.89■■□□□ 1.09
SQSTM1-211ENST00000506690 ATP10AO60312 1499 aa21.89■■□□□ 1.09
SQSTM1-211ENST00000506690 OSCARQ8IYS5 282 aa21.88■■□□□ 1.09
SQSTM1-211ENST00000506690 IQGAP3Q86VI3 1631 aa21.88■■□□□ 1.09
SQSTM1-211ENST00000506690 SAMD9LQ8IVG5 1584 aa21.87■■□□□ 1.09
SQSTM1-211ENST00000506690 GLIPR1L2Q4G1C9 344 aa21.87■■□□□ 1.09
SQSTM1-211ENST00000506690 NGEFQ8N5V2 710 aa21.86■■□□□ 1.09
SQSTM1-211ENST00000506690 UPF2Q9HAU5 1272 aaKnown RBP21.86■■□□□ 1.09
SQSTM1-211ENST00000506690 PNNQ9H307 717 aaKnown RBP21.85■■□□□ 1.09
SQSTM1-211ENST00000506690 MYOM1P52179 1685 aa21.85■■□□□ 1.09
SQSTM1-211ENST00000506690 COG6Q9Y2V7 657 aa21.85■■□□□ 1.09
SQSTM1-211ENST00000506690 DMRT2Q9Y5R5 561 aa21.85■■□□□ 1.09
SQSTM1-211ENST00000506690 MCM4P33991 863 aa21.84■■□□□ 1.09
SQSTM1-211ENST00000506690 RSPH4AQ5TD94 716 aa21.84■■□□□ 1.09
SQSTM1-211ENST00000506690 PANK1Q8TE04 598 aa21.84■■□□□ 1.09
SQSTM1-211ENST00000506690 CENPJQ9HC77 1338 aaPredicted RBP21.83■■□□□ 1.09
SQSTM1-211ENST00000506690 CDCA8Q53HL2 280 aa21.82■■□□□ 1.08
SQSTM1-211ENST00000506690 PKNOX2Q96KN3 472 aa21.82■■□□□ 1.08
SQSTM1-211ENST00000506690 CDC42BPBQ9Y5S2 1711 aa21.82■■□□□ 1.08
SQSTM1-211ENST00000506690 MAST1Q9Y2H9 1570 aa21.82■■□□□ 1.08
SQSTM1-211ENST00000506690 AAMPQ13685 434 aa21.82■■□□□ 1.08
SQSTM1-211ENST00000506690 PANK2Q9BZ23 570 aa21.82■■□□□ 1.08
SQSTM1-211ENST00000506690 PMFBP1Q8TBY8 1022 aa21.81■■□□□ 1.08
SQSTM1-211ENST00000506690 NAP1L5Q96NT1 182 aaPredicted RBP21.81■■□□□ 1.08
SQSTM1-211ENST00000506690 ZCCHC11Q5TAX3 1644 aaKnown RBP21.81■■□□□ 1.08
SQSTM1-211ENST00000506690 MADDQ8WXG6 1647 aa21.81■■□□□ 1.08
SQSTM1-211ENST00000506690 PREX2Q70Z35 1606 aa21.8■■□□□ 1.08
SQSTM1-211ENST00000506690 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.79■■□□□ 1.08
SQSTM1-211ENST00000506690 CANXP27824 592 aaKnown RBP21.78■■□□□ 1.08
SQSTM1-211ENST00000506690 RRP9O43818 475 aaKnown RBP21.78■■□□□ 1.08
SQSTM1-211ENST00000506690 ARXQ96QS3 562 aa21.78■■□□□ 1.08
SQSTM1-211ENST00000506690 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.77■■□□□ 1.08
SQSTM1-211ENST00000506690 TTC37Q6PGP7 1564 aa21.77■■□□□ 1.08
SQSTM1-211ENST00000506690 MRE11P49959 708 aa21.77■■□□□ 1.08
SQSTM1-211ENST00000506690 PCDHB15Q9Y5E8 787 aa21.76■■□□□ 1.07
SQSTM1-211ENST00000506690 SCAF11Q99590 1463 aaKnown RBP21.76■■□□□ 1.07
SQSTM1-211ENST00000506690 ARHGAP5Q13017 1502 aa21.76■■□□□ 1.07
SQSTM1-211ENST00000506690 PDZRN3Q9UPQ7 1066 aa21.76■■□□□ 1.07
SQSTM1-211ENST00000506690 SCAPERQ9BY12 1400 aa21.75■■□□□ 1.07
SQSTM1-211ENST00000506690 TRAK2O60296 914 aa21.75■■□□□ 1.07
SQSTM1-211ENST00000506690 HSP90AA1P07900 732 aaKnown RBP21.75■■□□□ 1.07
SQSTM1-211ENST00000506690 WWC1Q8IX03 1113 aa21.75■■□□□ 1.07
SQSTM1-211ENST00000506690 GZF1Q9H116 711 aaPredicted RBP21.75■■□□□ 1.07
SQSTM1-211ENST00000506690 HSP90AA2PQ14568 343 aaPredicted RBP21.75■■□□□ 1.07
SQSTM1-211ENST00000506690 CHMP5Q9NZZ3 219 aa21.75■■□□□ 1.07
SQSTM1-211ENST00000506690 RTEL1-TNFRSF6BF6WH68 1400 aa21.74■■□□□ 1.07
SQSTM1-211ENST00000506690 SYCP2Q9BX26 1530 aa21.73■■□□□ 1.07
SQSTM1-211ENST00000506690 KDM5AP29375 1690 aaKnown RBP21.72■■□□□ 1.07
SQSTM1-211ENST00000506690 RARSP54136 660 aaKnown RBP21.71■■□□□ 1.07
SQSTM1-211ENST00000506690 SPHKAPQ2M3C7 1700 aa21.7■■□□□ 1.07
SQSTM1-211ENST00000506690 SPRYD3Q8NCJ5 442 aa21.7■■□□□ 1.06
SQSTM1-211ENST00000506690 ISY1Q9ULR0 285 aaKnown RBP21.7■■□□□ 1.06
SQSTM1-211ENST00000506690 RLBP1P12271 317 aa21.7■■□□□ 1.06
SQSTM1-211ENST00000506690 DUOX2Q9NRD8 1548 aa21.69■■□□□ 1.06
SQSTM1-211ENST00000506690 CEP152O94986 1710 aa21.69■■□□□ 1.06
SQSTM1-211ENST00000506690 VSIG10Q8N0Z9 540 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms