RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 RPRD2Q5VT52 1461 aaKnown RBP25.36■■□□□ 1.65
SYNE4-207ENST00000505054 IDI1Q13907 227 aa25.36■■□□□ 1.65
SYNE4-207ENST00000505054 FAM135BQ49AJ0 1406 aa25.36■■□□□ 1.65
SYNE4-207ENST00000505054 TMEM94Q12767 1356 aa25.35■■□□□ 1.65
SYNE4-207ENST00000505054 ROBO1Q9Y6N7 1651 aa25.35■■□□□ 1.65
SYNE4-207ENST00000505054 MYO5BQ9ULV0 1848 aa25.34■■□□□ 1.65
SYNE4-207ENST00000505054 IQGAP3Q86VI3 1631 aa25.32■■□□□ 1.64
SYNE4-207ENST00000505054 KCNA6P17658 529 aa25.31■■□□□ 1.64
SYNE4-207ENST00000505054 NUP155O75694 1391 aa25.3■■□□□ 1.64
SYNE4-207ENST00000505054 SLC52A1Q9NWF4 448 aa25.29■■□□□ 1.64
SYNE4-207ENST00000505054 SLC26A8Q96RN1 970 aa25.27■■□□□ 1.64
SYNE4-207ENST00000505054 CHD2O14647 1828 aaKnown RBP25.27■■□□□ 1.64
SYNE4-207ENST00000505054 ZFYVE9O95405 1425 aa25.26■■□□□ 1.63
SYNE4-207ENST00000505054 TMEM131LA2VDJ0 1609 aa25.26■■□□□ 1.63
SYNE4-207ENST00000505054 SETD5Q9C0A6 1442 aa25.24■■□□□ 1.63
SYNE4-207ENST00000505054 PROSER2Q86WR7 435 aaPredicted RBP25.24■■□□□ 1.63
SYNE4-207ENST00000505054 PLEKHG1Q9ULL1 1385 aa25.23■■□□□ 1.63
SYNE4-207ENST00000505054 RGS17Q9UGC6 210 aaPredicted RBP25.22■■□□□ 1.63
SYNE4-207ENST00000505054 MSH6P52701 1360 aa25.21■■□□□ 1.63
SYNE4-207ENST00000505054 PHLPP1O60346 1717 aa25.21■■□□□ 1.63
SYNE4-207ENST00000505054 E9PCH4 1651 aa25.2■■□□□ 1.63
SYNE4-207ENST00000505054 RIMS2Q9UQ26 1411 aa25.2■■□□□ 1.62
SYNE4-207ENST00000505054 BCANQ96GW7 911 aa25.18■■□□□ 1.62
SYNE4-207ENST00000505054 DIP2AQ14689 1571 aa25.18■■□□□ 1.62
SYNE4-207ENST00000505054 RAB3GAP2Q9H2M9 1393 aa25.18■■□□□ 1.62
SYNE4-207ENST00000505054 TRIM52Q96A61 297 aa25.17■■□□□ 1.62
SYNE4-207ENST00000505054 RBM33Q96EV2 1170 aaKnown RBP25.17■■□□□ 1.62
SYNE4-207ENST00000505054 PPP1R15AO75807 674 aaPredicted RBP25.14■■□□□ 1.62
SYNE4-207ENST00000505054 HDGFP51858 240 aaKnown RBP25.13■■□□□ 1.61
SYNE4-207ENST00000505054 COL16A1Q07092 1604 aaPredicted RBP25.12■■□□□ 1.61
SYNE4-207ENST00000505054 NCOA3Q9Y6Q9 1424 aa25.12■■□□□ 1.61
SYNE4-207ENST00000505054 SLAIN2Q9P270 581 aa25.09■■□□□ 1.61
SYNE4-207ENST00000505054 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.08■■□□□ 1.61
SYNE4-207ENST00000505054 SLC4A1APQ9BWU0 796 aaKnown RBP25.08■■□□□ 1.61
SYNE4-207ENST00000505054 ADAMTS13Q76LX8 1427 aa25.08■■□□□ 1.61
SYNE4-207ENST00000505054 JCADQ9P266 1359 aa25.07■■□□□ 1.6
SYNE4-207ENST00000505054 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.07■■□□□ 1.6
SYNE4-207ENST00000505054 TBX22Q9Y458 520 aa25.07■■□□□ 1.6
SYNE4-207ENST00000505054 POTEAQ6S8J7 498 aa25.06■■□□□ 1.6
SYNE4-207ENST00000505054 TRPM2O94759 1503 aa25.06■■□□□ 1.6
SYNE4-207ENST00000505054 PIK3R4Q99570 1358 aa25.05■■□□□ 1.6
SYNE4-207ENST00000505054 TRIM26Q12899 539 aaPredicted RBP25.05■■□□□ 1.6
SYNE4-207ENST00000505054 ACIN1Q9UKV3 1341 aaKnown RBP25.05■■□□□ 1.6
SYNE4-207ENST00000505054 SETD1AO15047 1707 aaKnown RBP25.04■■□□□ 1.6
SYNE4-207ENST00000505054 AHDC1Q5TGY3 1603 aaPredicted RBP25.04■■□□□ 1.6
SYNE4-207ENST00000505054 CHGAP10645 457 aaKnown RBP25.03■■□□□ 1.6
SYNE4-207ENST00000505054 SPHKAPQ2M3C7 1700 aa25.03■■□□□ 1.6
SYNE4-207ENST00000505054 SHPRHQ149N8 1683 aa25.02■■□□□ 1.6
SYNE4-207ENST00000505054 HRCP23327 699 aa25.02■■□□□ 1.6
SYNE4-207ENST00000505054 MPHOSPH9Q99550 1183 aa25.02■■□□□ 1.6
SYNE4-207ENST00000505054 XRN1Q8IZH2 1706 aaKnown RBP24.98■■□□□ 1.59
SYNE4-207ENST00000505054 NRXN3Q9Y4C0 1643 aa24.98■■□□□ 1.59
SYNE4-207ENST00000505054 C14orf37Q86TY3 774 aa24.98■■□□□ 1.59
SYNE4-207ENST00000505054 FOXD1Q16676 465 aa24.97■■□□□ 1.59
SYNE4-207ENST00000505054 LRP6O75581 1613 aa24.97■■□□□ 1.59
SYNE4-207ENST00000505054 NUTM2DQ5VT03 806 aaPredicted RBP24.96■■□□□ 1.59
SYNE4-207ENST00000505054 CADPS2Q86UW7 1296 aa24.96■■□□□ 1.59
SYNE4-207ENST00000505054 SETBP1Q9Y6X0 1596 aa24.96■■□□□ 1.59
SYNE4-207ENST00000505054 DCCP43146 1447 aa24.95■■□□□ 1.58
SYNE4-207ENST00000505054 CLTCL1P53675 1640 aa24.94■■□□□ 1.58
SYNE4-207ENST00000505054 SPATA31A6Q5VVP1 1343 aa24.94■■□□□ 1.58
SYNE4-207ENST00000505054 C19orf44Q9H6X5 657 aa24.94■■□□□ 1.58
SYNE4-207ENST00000505054 PTPRUQ92729 1446 aa24.94■■□□□ 1.58
SYNE4-207ENST00000505054 ATF3P18847 181 aa24.92■■□□□ 1.58
SYNE4-207ENST00000505054 ASXL1Q8IXJ9 1541 aa24.88■■□□□ 1.57
SYNE4-207ENST00000505054 NHSL1Q5SYE7 1610 aa24.88■■□□□ 1.57
SYNE4-207ENST00000505054 AMOTL2Q9Y2J4 779 aa24.88■■□□□ 1.57
SYNE4-207ENST00000505054 MEX3CQ5U5Q3 659 aaKnown RBP24.85■■□□□ 1.57
SYNE4-207ENST00000505054 BRINP3Q76B58 766 aa24.84■■□□□ 1.57
SYNE4-207ENST00000505054 NALCNQ8IZF0 1738 aa24.83■■□□□ 1.57
SYNE4-207ENST00000505054 NEXMIFQ5QGS0 1516 aa24.83■■□□□ 1.57
SYNE4-207ENST00000505054 ZNF772Q68DY9 489 aaPredicted RBP24.83■■□□□ 1.57
SYNE4-207ENST00000505054 KIF1BO60333 1816 aa24.83■■□□□ 1.57
SYNE4-207ENST00000505054 CCDC144AA2RUR9 1427 aa24.83■■□□□ 1.57
SYNE4-207ENST00000505054 MST1RQ04912 1400 aa24.82■■□□□ 1.56
SYNE4-207ENST00000505054 ANKRD30BQ9BXX2 1392 aa24.8■■□□□ 1.56
SYNE4-207ENST00000505054 ADGRL3Q9HAR2 1447 aa24.79■■□□□ 1.56
SYNE4-207ENST00000505054 ZNF326Q5BKZ1 582 aaKnown RBP24.78■■□□□ 1.56
SYNE4-207ENST00000505054 METP08581 1390 aa24.78■■□□□ 1.56
SYNE4-207ENST00000505054 SPATA31E1Q6ZUB1 1445 aa24.75■■□□□ 1.55
SYNE4-207ENST00000505054 CDK12Q9NYV4 1490 aaPredicted RBP24.75■■□□□ 1.55
SYNE4-207ENST00000505054 PCGF6Q9BYE7 350 aa24.72■■□□□ 1.55
SYNE4-207ENST00000505054 LAMC1P11047 1609 aa24.72■■□□□ 1.55
SYNE4-207ENST00000505054 PTCH1Q13635 1447 aa24.7■■□□□ 1.55
SYNE4-207ENST00000505054 NUTM2BA6NNL0 878 aaPredicted RBP24.7■■□□□ 1.54
SYNE4-207ENST00000505054 NUTM2EB1AL46 878 aaPredicted RBP24.7■■□□□ 1.54
SYNE4-207ENST00000505054 NUTM2AQ8IVF1 878 aaPredicted RBP24.7■■□□□ 1.54
SYNE4-207ENST00000505054 DHX57Q6P158 1386 aaKnown RBP24.69■■□□□ 1.54
SYNE4-207ENST00000505054 RXRBP28702 533 aa24.68■■□□□ 1.54
SYNE4-207ENST00000505054 PNPLA6Q8IY17 1366 aa24.67■■□□□ 1.54
SYNE4-207ENST00000505054 AFF2P51816 1311 aa24.67■■□□□ 1.54
SYNE4-207ENST00000505054 UPF1Q92900 1129 aaKnown RBP eCLIP24.67■■□□□ 1.54
SYNE4-207ENST00000505054 LRRC59Q96AG4 307 aaKnown RBP24.67■■□□□ 1.54
SYNE4-207ENST00000505054 PRAG1Q86YV5 1406 aa24.67■■□□□ 1.54
SYNE4-207ENST00000505054 PPLO60437 1756 aa24.66■■□□□ 1.54
SYNE4-207ENST00000505054 C1orf167Q5SNV9 1468 aa24.64■■□□□ 1.54
SYNE4-207ENST00000505054 RPGRIP1LQ68CZ1 1315 aa24.64■■□□□ 1.54
SYNE4-207ENST00000505054 RGL3Q3MIN7 710 aa24.64■■□□□ 1.54
SYNE4-207ENST00000505054 IFT172Q9UG01 1749 aa24.61■■□□□ 1.53
SYNE4-207ENST00000505054 DDX17Q92841 729 aaKnown RBP24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms