RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-231	ENST00000498751	KANK1	Q14678	1352 aa		10.81	□□□□□ -0.68
SYNE1-231	ENST00000498751	EFCAB6	Q5THR3	1501 aa		10.8	□□□□□ -0.68
SYNE1-231	ENST00000498751	PRAG1	Q86YV5	1406 aa		10.8	□□□□□ -0.68
SYNE1-231	ENST00000498751	SPHKAP	Q2M3C7	1700 aa		10.8	□□□□□ -0.68
SYNE1-231	ENST00000498751	TRPM1	Q7Z4N2	1603 aa		10.8	□□□□□ -0.68
SYNE1-231	ENST00000498751	GABBR2	O75899	941 aa		10.79	□□□□□ -0.68
SYNE1-231	ENST00000498751	HSPA5	P11021	654 aa	Known RBP	10.79	□□□□□ -0.68
SYNE1-231	ENST00000498751	CEP152	O94986	1710 aa		10.78	□□□□□ -0.68
SYNE1-231	ENST00000498751	DIP2C	Q9Y2E4	1556 aa		10.78	□□□□□ -0.68
SYNE1-231	ENST00000498751	ABCA6	Q8N139	1617 aa		10.78	□□□□□ -0.68
SYNE1-231	ENST00000498751	CCER2	I3L3R5	266 aa		10.78	□□□□□ -0.68
SYNE1-231	ENST00000498751	ARHGAP31	Q2M1Z3	1444 aa		10.77	□□□□□ -0.68
SYNE1-231	ENST00000498751	ZC3H13	Q5T200	1668 aa	Known RBP	10.77	□□□□□ -0.69
SYNE1-231	ENST00000498751	WASHC2A	Q641Q2	1341 aa		10.77	□□□□□ -0.69
SYNE1-231	ENST00000498751	CCDC7	Q96M83	1385 aa		10.77	□□□□□ -0.69
SYNE1-231	ENST00000498751	PPRC1	Q5VV67	1664 aa	Known RBP	10.76	□□□□□ -0.69
SYNE1-231	ENST00000498751	AGL	P35573	1532 aa		10.75	□□□□□ -0.69
SYNE1-231	ENST00000498751	CENPB	P07199	599 aa	Predicted RBP	10.75	□□□□□ -0.69
SYNE1-231	ENST00000498751	CLTCL1	P53675	1640 aa		10.75	□□□□□ -0.69
SYNE1-231	ENST00000498751	USP47	Q96K76	1375 aa		10.75	□□□□□ -0.69
SYNE1-231	ENST00000498751	KIAA1210	Q9ULL0	1709 aa		10.75	□□□□□ -0.69
SYNE1-231	ENST00000498751	CNTLN	Q9NXG0	1405 aa		10.75	□□□□□ -0.69
SYNE1-231	ENST00000498751	MYOM2	P54296	1465 aa		10.74	□□□□□ -0.69
SYNE1-231	ENST00000498751	CYB5RL	Q6IPT4	315 aa		10.74	□□□□□ -0.69
SYNE1-231	ENST00000498751	ROCK2	O75116	1388 aa	Known RBP	10.74	□□□□□ -0.69
SYNE1-231	ENST00000498751	KIF3B	O15066	747 aa		10.73	□□□□□ -0.69
SYNE1-231	ENST00000498751	DDX10	Q13206	875 aa	Known RBP	10.73	□□□□□ -0.69
SYNE1-231	ENST00000498751	ABCC3	O15438	1527 aa		10.73	□□□□□ -0.69
SYNE1-231	ENST00000498751	MNX1	P50219	401 aa	Predicted RBP	10.72	□□□□□ -0.69
SYNE1-231	ENST00000498751	NOS1	P29475	1434 aa		10.72	□□□□□ -0.69
SYNE1-231	ENST00000498751	NRXN1	Q9ULB1	1477 aa		10.72	□□□□□ -0.69
SYNE1-231	ENST00000498751	MADD	Q8WXG6	1647 aa		10.72	□□□□□ -0.69
SYNE1-231	ENST00000498751	ADGRB3	O60242	1522 aa		10.71	□□□□□ -0.69
SYNE1-231	ENST00000498751	NPAT	Q14207	1427 aa		10.71	□□□□□ -0.69
SYNE1-231	ENST00000498751	IFT172	Q9UG01	1749 aa		10.7	□□□□□ -0.7
SYNE1-231	ENST00000498751	PIK3C2B	O00750	1634 aa		10.7	□□□□□ -0.7
SYNE1-231	ENST00000498751	DCAF11	Q8TEB1	546 aa		10.7	□□□□□ -0.7
SYNE1-231	ENST00000498751	KIF7	Q2M1P5	1343 aa		10.69	□□□□□ -0.7
SYNE1-231	ENST00000498751	ANP32C	O43423	234 aa		10.69	□□□□□ -0.7
SYNE1-231	ENST00000498751	CAMSAP1	Q5T5Y3	1602 aa		10.69	□□□□□ -0.7
SYNE1-231	ENST00000498751	C11orf95	C9JLR9	678 aa	Predicted RBP	10.68	□□□□□ -0.7
SYNE1-231	ENST00000498751	IQGAP1	P46940	1657 aa		10.67	□□□□□ -0.7
SYNE1-231	ENST00000498751	ZNF579	Q8NAF0	562 aa	Known RBP	10.67	□□□□□ -0.7
SYNE1-231	ENST00000498751	CARD11	Q9BXL7	1154 aa		10.67	□□□□□ -0.7
SYNE1-231	ENST00000498751	ZRANB1	Q9UGI0	708 aa		10.67	□□□□□ -0.7
SYNE1-231	ENST00000498751	KIF1B	O60333	1816 aa		10.67	□□□□□ -0.7
SYNE1-231	ENST00000498751	KIF13A	Q9H1H9	1805 aa		10.67	□□□□□ -0.7
SYNE1-231	ENST00000498751	YEATS2	Q9ULM3	1422 aa		10.67	□□□□□ -0.7
SYNE1-231	ENST00000498751	SETBP1	Q9Y6X0	1596 aa		10.66	□□□□□ -0.7
SYNE1-231	ENST00000498751	FAM69C	Q0P6D2	419 aa		10.66	□□□□□ -0.7
SYNE1-231	ENST00000498751	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.66	□□□□□ -0.7
SYNE1-231	ENST00000498751	KTN1	Q86UP2	1357 aa	Known RBP	10.65	□□□□□ -0.7
SYNE1-231	ENST00000498751	RPGRIP1L	Q68CZ1	1315 aa		10.65	□□□□□ -0.7
SYNE1-231	ENST00000498751	SLC24A1	O60721	1099 aa		10.65	□□□□□ -0.7
SYNE1-231	ENST00000498751	RAPGEF3	O95398	923 aa		10.65	□□□□□ -0.7
SYNE1-231	ENST00000498751	COL17A1	Q9UMD9	1497 aa	Predicted RBP	10.65	□□□□□ -0.7
SYNE1-231	ENST00000498751	ZFYVE9	O95405	1425 aa		10.65	□□□□□ -0.7
SYNE1-231	ENST00000498751	SBNO2	Q9Y2G9	1366 aa		10.64	□□□□□ -0.71
SYNE1-231	ENST00000498751	ARHGEF40	Q8TER5	1519 aa		10.63	□□□□□ -0.71
SYNE1-231	ENST00000498751	SCAF11	Q99590	1463 aa	Known RBP	10.63	□□□□□ -0.71
SYNE1-231	ENST00000498751	MYO3A	Q8NEV4	1616 aa		10.63	□□□□□ -0.71
SYNE1-231	ENST00000498751	FKBP8	Q14318	412 aa		10.63	□□□□□ -0.71
SYNE1-231	ENST00000498751	SYNM	O15061	1565 aa		10.63	□□□□□ -0.71
SYNE1-231	ENST00000498751	WASHC2C	Q9Y4E1	1318 aa		10.62	□□□□□ -0.71
SYNE1-231	ENST00000498751	SIGLEC1	Q9BZZ2	1709 aa		10.62	□□□□□ -0.71
SYNE1-231	ENST00000498751	TESK2	Q96S53	571 aa		10.62	□□□□□ -0.71
SYNE1-231	ENST00000498751	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.62	□□□□□ -0.71
SYNE1-231	ENST00000498751	MROH2A	A6NES4	1674 aa		10.61	□□□□□ -0.71
SYNE1-231	ENST00000498751	ST20-MTHFS	A0A0A6YYL1	179 aa		10.61	□□□□□ -0.71
SYNE1-231	ENST00000498751	POTEI	P0CG38	1075 aa		10.61	□□□□□ -0.71
SYNE1-231	ENST00000498751	MYT1L	Q9UL68	1186 aa		10.61	□□□□□ -0.71
SYNE1-231	ENST00000498751	PPL	O60437	1756 aa		10.61	□□□□□ -0.71
SYNE1-231	ENST00000498751	PIK3C2G	O75747	1445 aa		10.6	□□□□□ -0.71
SYNE1-231	ENST00000498751	RGL3	Q3MIN7	710 aa		10.6	□□□□□ -0.71
SYNE1-231	ENST00000498751	SLC52A1	Q9NWF4	448 aa		10.6	□□□□□ -0.71
SYNE1-231	ENST00000498751	KDM2A	Q9Y2K7	1162 aa		10.6	□□□□□ -0.71
SYNE1-231	ENST00000498751	SPATA31D1	Q6ZQQ2	1576 aa		10.6	□□□□□ -0.71
SYNE1-231	ENST00000498751	UGGT1	Q9NYU2	1555 aa		10.6	□□□□□ -0.71
SYNE1-231	ENST00000498751	PREX1	Q8TCU6	1659 aa		10.6	□□□□□ -0.71
SYNE1-231	ENST00000498751	NBPF1	Q3BBV0	1214 aa		10.59	□□□□□ -0.71
SYNE1-231	ENST00000498751	NEXMIF	Q5QGS0	1516 aa		10.58	□□□□□ -0.72
SYNE1-231	ENST00000498751	EIF3A	Q14152	1382 aa	Known RBP	10.58	□□□□□ -0.72
SYNE1-231	ENST00000498751	PHF12	Q96QT6	1004 aa		10.58	□□□□□ -0.72
SYNE1-231	ENST00000498751	ADGRB1	O14514	1584 aa		10.57	□□□□□ -0.72
SYNE1-231	ENST00000498751	CLCN6	P51797	869 aa		10.57	□□□□□ -0.72
SYNE1-231	ENST00000498751	ZNF326	Q5BKZ1	582 aa	Known RBP	10.57	□□□□□ -0.72
SYNE1-231	ENST00000498751	GGT6	Q6P531	493 aa		10.57	□□□□□ -0.72
SYNE1-231	ENST00000498751	ERVK-7	P63135	1459 aa		10.56	□□□□□ -0.72
SYNE1-231	ENST00000498751	TMEM131L	A2VDJ0	1609 aa		10.56	□□□□□ -0.72
SYNE1-231	ENST00000498751	PAK3	O75914	559 aa	Predicted RBP	10.56	□□□□□ -0.72
SYNE1-231	ENST00000498751	KDM5A	P29375	1690 aa	Known RBP	10.56	□□□□□ -0.72
SYNE1-231	ENST00000498751	INSR	P06213	1382 aa		10.55	□□□□□ -0.72
SYNE1-231	ENST00000498751	PER1	O15534	1290 aa	Predicted RBP	10.55	□□□□□ -0.72
SYNE1-231	ENST00000498751	TMF1	P82094	1093 aa		10.55	□□□□□ -0.72
SYNE1-231	ENST00000498751	CDCA8	Q53HL2	280 aa		10.55	□□□□□ -0.72
SYNE1-231	ENST00000498751	PUS7	Q96PZ0	661 aa	Known RBP	10.55	□□□□□ -0.72
SYNE1-231	ENST00000498751	C14orf93	Q9H972	538 aa	Known RBP	10.55	□□□□□ -0.72
SYNE1-231	ENST00000498751	NPC1L1	Q9UHC9	1359 aa		10.54	□□□□□ -0.72
SYNE1-231	ENST00000498751	GALR2	O43603	387 aa	Predicted RBP	10.54	□□□□□ -0.72
SYNE1-231	ENST00000498751	TSPOAP1	O95153	1857 aa		10.53	□□□□□ -0.72

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