RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	PMFBP1	Q8TBY8	1022 aa		13.34	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	PCDHB15	Q9Y5E8	787 aa		13.33	□□□□□ -0.27
TRAPPC12-223	ENST00000497597	TNPO1	Q92973	898 aa	Known RBP	13.33	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	PLCB2	Q00722	1185 aa		13.33	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.33	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	RNF214	Q8ND24	703 aa		13.33	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.32	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.32	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.32	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	ITPRIP	Q8IWB1	547 aa		13.32	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	CFAP43	Q8NDM7	1665 aa		13.31	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	CAVIN1	Q6NZI2	390 aa	Known RBP	13.31	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	JARID2	Q92833	1246 aa	Predicted RBP	13.31	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	ZSCAN30	Q86W11	494 aa		13.31	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	PRDM4	Q9UKN5	801 aa		13.31	□□□□□ -0.28
TRAPPC12-223	ENST00000497597		E9PSI1	815 aa		13.3	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	FBLN2	P98095	1184 aa		13.3	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	LNPK	Q9C0E8	428 aa		13.3	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	CHD1	O14646	1710 aa		13.3	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	PER1	O15534	1290 aa	Predicted RBP	13.3	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.3	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	ADAMTS12	P58397	1594 aa		13.3	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	MCTP1	Q6DN14	999 aa		13.29	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	TSC1	Q92574	1164 aa		13.29	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	PARD3	Q8TEW0	1356 aa		13.29	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	RIPK4	P57078	832 aa		13.29	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	CALD1	Q05682	793 aa	Known RBP	13.29	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	FAM177B	A6PVY3	158 aa		13.28	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	RLBP1	P12271	317 aa		13.28	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	SSFA2	P28290	1259 aa		13.28	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.28	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	CUL7	Q14999	1698 aa		13.28	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	IGSF3	O75054	1194 aa		13.27	□□□□□ -0.28
TRAPPC12-223	ENST00000497597	CCDC173	Q0VFZ6	552 aa		13.27	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	KIAA1107	Q9UPP5	1409 aa		13.27	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	DISP3	Q9P2K9	1392 aa		13.26	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	CDK13	Q14004	1512 aa	Known RBP	13.26	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	CBX1	P83916	185 aa		13.26	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	RBM42	Q9BTD8	480 aa	Known RBP	13.26	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	DAPK1	P53355	1430 aa		13.25	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.25	□□□□□ -0.29	1e-6	■■■■□ 26.1
TRAPPC12-223	ENST00000497597	SMC4	Q9NTJ3	1288 aa		13.25	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	APBB1	O00213	710 aa		13.25	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	PDE3A	Q14432	1141 aa		13.25	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	GRIN2B	Q13224	1484 aa		13.24	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	FGD1	P98174	961 aa		13.24	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.24	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	EFCAB5	A4FU69	1503 aa		13.24	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	ABCC5	O15440	1437 aa		13.24	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	NOL8	Q76FK4	1167 aa	Known RBP	13.23	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	OFD1	O75665	1012 aa		13.23	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	PDE4C	Q08493	712 aa		13.23	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.23	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	RBM27	Q9P2N5	1060 aa	Known RBP	13.23	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	CLASP1	Q7Z460	1538 aa		13.22	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	GAPVD1	Q14C86	1478 aa		13.22	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.22	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	BBX	Q8WY36	941 aa	Predicted RBP	13.22	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	EHBP1L1	Q8N3D4	1523 aa		13.22	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	EIF3A	Q14152	1382 aa	Known RBP	13.21	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	ANKRD30A	Q9BXX3	1397 aa		13.21	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	SNAPC4	Q5SXM2	1469 aa		13.21	□□□□□ -0.29
TRAPPC12-223	ENST00000497597	PRPF40A	O75400	957 aa	Known RBP	13.21	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	TSR2	Q969E8	191 aa	Known RBP	13.21	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	VGLL3	A8MV65	326 aa		13.2	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	U2SURP	O15042	1029 aa	Known RBP	13.2	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	ANKRD45	Q5TZF3	282 aa		13.2	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	CHAMP1	Q96JM3	812 aa		13.2	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	SHROOM2	Q13796	1616 aa		13.19	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	HECW1	Q76N89	1606 aa		13.19	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	SPDYE4	A6NLX3	237 aa		13.19	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	WWC1	Q8IX03	1113 aa		13.19	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	ANKRD50	Q9ULJ7	1429 aa		13.19	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.19	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	RARS	P54136	660 aa	Known RBP	13.19	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.19	□□□□□ -0.3	2e-6	■□□□□ 9.2
TRAPPC12-223	ENST00000497597	DZIP1L	Q8IYY4	767 aa	Known RBP	13.19	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	MAP7D2	Q96T17	732 aa		13.19	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	CHGA	P10645	457 aa	Known RBP	13.18	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	TCP11L2	Q8N4U5	519 aa		13.18	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	C1orf115	Q9H7X2	142 aa		13.18	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	NKTR	P30414	1462 aa	Known RBP	13.18	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	MORC1	Q86VD1	984 aa		13.18	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	CHMP4B	Q9H444	224 aa	Known RBP	13.18	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	SYNJ2	O15056	1496 aa		13.18	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	ZKSCAN2	Q63HK3	967 aa		13.17	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	ZNF830	Q96NB3	372 aa	Predicted RBP	13.17	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	MAGI3	Q5TCQ9	1506 aa		13.17	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	UGGT2	Q9NYU1	1516 aa		13.17	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	CDK11B	P21127	795 aa	Known RBP	13.17	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	ISY1	Q9ULR0	285 aa	Known RBP	13.16	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	SYCE3	A1L190	88 aa		13.16	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	PLCD3	Q8N3E9	789 aa		13.16	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	TESK2	Q96S53	571 aa		13.16	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	CCDC144A	A2RUR9	1427 aa		13.15	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	CD2BP2	O95400	341 aa	Known RBP	13.15	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	GAS2L2	Q8NHY3	880 aa		13.15	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	ELL2	O00472	640 aa	Predicted RBP	13.15	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	PRIM1	P49642	420 aa	Known RBP	13.15	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	RBSN	Q9H1K0	784 aa		13.15	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms