RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SPATA31E1Q6ZUB1 1445 aa11.3□□□□□ -0.6
USP54-215ENST00000497106 ZMYM3Q14202 1370 aa11.3□□□□□ -0.6
USP54-215ENST00000497106 GPRASP1Q5JY77 1395 aa11.3□□□□□ -0.6
USP54-215ENST00000497106 NEURL4Q96JN8 1562 aa11.3□□□□□ -0.6
USP54-215ENST00000497106 CFAP70Q5T0N1 1121 aa11.29□□□□□ -0.6
USP54-215ENST00000497106 PLA2R1Q13018 1463 aa11.29□□□□□ -0.6
USP54-215ENST00000497106 WASHC2AQ641Q2 1341 aa11.28□□□□□ -0.6
USP54-215ENST00000497106 C14orf93Q9H972 538 aaKnown RBP11.28□□□□□ -0.6
USP54-215ENST00000497106 E9PCH4 1651 aa11.28□□□□□ -0.6
USP54-215ENST00000497106 CAMSAP1Q5T5Y3 1602 aa11.28□□□□□ -0.6
USP54-215ENST00000497106 TRAK1Q9UPV9 953 aa11.28□□□□□ -0.6
USP54-215ENST00000497106 KIF1BO60333 1816 aa11.27□□□□□ -0.6
USP54-215ENST00000497106 SRPK2P78362 688 aaKnown RBP11.27□□□□□ -0.6
USP54-215ENST00000497106 NBPF1Q3BBV0 1214 aa11.27□□□□□ -0.6
USP54-215ENST00000497106 BCORL1Q5H9F3 1711 aa11.27□□□□□ -0.6
USP54-215ENST00000497106 ERVK-7P63135 1459 aa11.27□□□□□ -0.6
USP54-215ENST00000497106 HDGFL2Q7Z4V5 671 aaPredicted RBP11.27□□□□□ -0.61
USP54-215ENST00000497106 STK26Q9P289 416 aa11.27□□□□□ -0.61
USP54-215ENST00000497106 TERF2IPQ9NYB0 399 aa11.26□□□□□ -0.61
USP54-215ENST00000497106 FRMPD1Q5SYB0 1578 aa11.26□□□□□ -0.61
USP54-215ENST00000497106 FBXO31Q5XUX0 539 aaPredicted RBP11.26□□□□□ -0.61
USP54-215ENST00000497106 NEFMP07197 916 aa11.25□□□□□ -0.61
USP54-215ENST00000497106 NUTM2DQ5VT03 806 aaPredicted RBP11.25□□□□□ -0.61
USP54-215ENST00000497106 ADGRF5Q8IZF2 1346 aa11.25□□□□□ -0.61
USP54-215ENST00000497106 CFAP53Q96M91 514 aa11.25□□□□□ -0.61
USP54-215ENST00000497106 PPRC1Q5VV67 1664 aaKnown RBP11.25□□□□□ -0.61
USP54-215ENST00000497106 RIMS2Q9UQ26 1411 aa11.25□□□□□ -0.61
USP54-215ENST00000497106 CEP152O94986 1710 aa11.25□□□□□ -0.61
USP54-215ENST00000497106 WDR43Q15061 677 aaKnown RBP eCLIP11.25□□□□□ -0.61
USP54-215ENST00000497106 CLTCL1P53675 1640 aa11.25□□□□□ -0.61
USP54-215ENST00000497106 TXNDC2Q86VQ3 553 aa11.24□□□□□ -0.61
USP54-215ENST00000497106 NLRP1Q9C000 1473 aa11.24□□□□□ -0.61
USP54-215ENST00000497106 PRKCSHP14314 528 aaPredicted RBP11.24□□□□□ -0.61
USP54-215ENST00000497106 ZFYVE9O95405 1425 aa11.23□□□□□ -0.61
USP54-215ENST00000497106 ADGRB3O60242 1522 aa11.23□□□□□ -0.61
USP54-215ENST00000497106 PUS7Q96PZ0 661 aaKnown RBP11.22□□□□□ -0.61
USP54-215ENST00000497106 MYBBP1AQ9BQG0 1328 aaKnown RBP11.22□□□□□ -0.61
USP54-215ENST00000497106 MROH1Q8NDA8 1641 aa11.21□□□□□ -0.61
USP54-215ENST00000497106 NINLQ9Y2I6 1382 aa11.21□□□□□ -0.61
USP54-215ENST00000497106 ANKLE2Q86XL3 938 aa11.21□□□□□ -0.61
USP54-215ENST00000497106 ATAD2Q6PL18 1390 aa11.21□□□□□ -0.61
USP54-215ENST00000497106 PRKRIP1Q9H875 184 aaPredicted RBP11.21□□□□□ -0.62
USP54-215ENST00000497106 HNRNPUQ00839 825 aaKnown RBP eCLIP11.21□□□□□ -0.62
USP54-215ENST00000497106 FAM9BQ8IZU0 186 aa11.21□□□□□ -0.62
USP54-215ENST00000497106 LAMC1P11047 1609 aa11.2□□□□□ -0.62
USP54-215ENST00000497106 NLRP13Q86W25 1043 aa11.2□□□□□ -0.62
USP54-215ENST00000497106 C14orf37Q86TY3 774 aa11.2□□□□□ -0.62
USP54-215ENST00000497106 PANK3Q9H999 370 aa11.2□□□□□ -0.62
USP54-215ENST00000497106 CGNL1Q0VF96 1302 aa11.2□□□□□ -0.62
USP54-215ENST00000497106 SAFB2Q14151 953 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP54-215ENST00000497106 TMEM132EQ6IEE7 984 aa11.19□□□□□ -0.62
USP54-215ENST00000497106 KIF13AQ9H1H9 1805 aa11.19□□□□□ -0.62
USP54-215ENST00000497106 MORC1Q86VD1 984 aa11.19□□□□□ -0.62
USP54-215ENST00000497106 SENP3Q9H4L4 574 aaPredicted RBP11.18□□□□□ -0.62
USP54-215ENST00000497106 CC2D1BQ5T0F9 858 aaKnown RBP11.18□□□□□ -0.62
USP54-215ENST00000497106 COL17A1Q9UMD9 1497 aaPredicted RBP11.17□□□□□ -0.62
USP54-215ENST00000497106 PIK3C2GO75747 1445 aa11.17□□□□□ -0.62
USP54-215ENST00000497106 NUDCQ9Y266 331 aa11.17□□□□□ -0.62
USP54-215ENST00000497106 SBNO2Q9Y2G9 1366 aa11.17□□□□□ -0.62
USP54-215ENST00000497106 TRPM1Q7Z4N2 1603 aa11.17□□□□□ -0.62
USP54-215ENST00000497106 PNNQ9H307 717 aaKnown RBP11.17□□□□□ -0.62
USP54-215ENST00000497106 CLTCQ00610 1675 aaKnown RBP11.16□□□□□ -0.62
USP54-215ENST00000497106 UGGT1Q9NYU2 1555 aa11.16□□□□□ -0.62
USP54-215ENST00000497106 MADDQ8WXG6 1647 aa11.16□□□□□ -0.62
USP54-215ENST00000497106 MINK1Q8N4C8 1332 aaPredicted RBP11.16□□□□□ -0.62
USP54-215ENST00000497106 SCAF1Q9H7N4 1312 aaKnown RBP11.16□□□□□ -0.62
USP54-215ENST00000497106 PRAM1Q96QH2 718 aa11.16□□□□□ -0.62
USP54-215ENST00000497106 TMEM2Q9UHN6 1383 aa11.16□□□□□ -0.62
USP54-215ENST00000497106 BRD4O60885 1362 aaPredicted RBP11.15□□□□□ -0.62
USP54-215ENST00000497106 SPATA31D1Q6ZQQ2 1576 aa11.15□□□□□ -0.62
USP54-215ENST00000497106 KIAA1210Q9ULL0 1709 aa11.15□□□□□ -0.62
USP54-215ENST00000497106 SETBP1Q9Y6X0 1596 aa11.15□□□□□ -0.62
USP54-215ENST00000497106 LRPPRCP42704 1394 aaKnown RBP11.15□□□□□ -0.63
USP54-215ENST00000497106 PREX1Q8TCU6 1659 aa11.14□□□□□ -0.63
USP54-215ENST00000497106 CEBPAP49715 358 aaPredicted RBP11.14□□□□□ -0.63
USP54-215ENST00000497106 SIRT1Q96EB6 747 aa11.13□□□□□ -0.63
USP54-215ENST00000497106 YTHDC2Q9H6S0 1430 aaKnown RBP11.13□□□□□ -0.63
USP54-215ENST00000497106 SYNMO15061 1565 aa11.13□□□□□ -0.63
USP54-215ENST00000497106 A2ML1A8K2U0 1454 aa11.12□□□□□ -0.63
USP54-215ENST00000497106 TESK2Q96S53 571 aa11.12□□□□□ -0.63
USP54-215ENST00000497106 NSD2O96028 1365 aa11.12□□□□□ -0.63
USP54-215ENST00000497106 DISP3Q9P2K9 1392 aa11.12□□□□□ -0.63
USP54-215ENST00000497106 PLEKHG1Q9ULL1 1385 aa11.12□□□□□ -0.63
USP54-215ENST00000497106 NRXN1Q9ULB1 1477 aa11.12□□□□□ -0.63
USP54-215ENST00000497106 TBX22Q9Y458 520 aa11.11□□□□□ -0.63
USP54-215ENST00000497106 C11orf95C9JLR9 678 aaPredicted RBP11.11□□□□□ -0.63
USP54-215ENST00000497106 ZNF692Q9BU19 519 aaPredicted RBP11.1□□□□□ -0.63
USP54-215ENST00000497106 NGEFQ8N5V2 710 aa11.1□□□□□ -0.63
USP54-215ENST00000497106 ABCC11Q96J66 1382 aa11.1□□□□□ -0.63
USP54-215ENST00000497106 CDK19Q9BWU1 502 aa11.1□□□□□ -0.63
USP54-215ENST00000497106 MROH2AA6NES4 1674 aa11.09□□□□□ -0.63
USP54-215ENST00000497106 BCL11AQ9H165 835 aa11.09□□□□□ -0.63
USP54-215ENST00000497106 CABP2Q9NPB3 220 aa11.09□□□□□ -0.63
USP54-215ENST00000497106 NEXMIFQ5QGS0 1516 aa11.09□□□□□ -0.63
USP54-215ENST00000497106 CFAP65Q6ZU64 1925 aaKnown RBP11.08□□□□□ -0.64
USP54-215ENST00000497106 NGDNQ8NEJ9 315 aaKnown RBP11.08□□□□□ -0.64
USP54-215ENST00000497106 NPC1L1Q9UHC9 1359 aa11.07□□□□□ -0.64
USP54-215ENST00000497106 PIK3C2BO00750 1634 aa11.07□□□□□ -0.64
USP54-215ENST00000497106 KDM5AP29375 1690 aaKnown RBP11.07□□□□□ -0.64
USP54-215ENST00000497106 PIK3R4Q99570 1358 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms