RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 PIP4K2AP48426 406 aaPredicted RBP7.05□□□□□ -1.28
USF3-204ENST00000496826 RNF168Q8IYW5 571 aaPredicted RBP7.05□□□□□ -1.28
USF3-204ENST00000496826 SHROOM4Q9ULL8 1493 aa7.05□□□□□ -1.28
USF3-204ENST00000496826 NEBLO76041 1014 aa7.05□□□□□ -1.28
USF3-204ENST00000496826 EPS15P42566 896 aa7.05□□□□□ -1.28
USF3-204ENST00000496826 IQCEQ6IPM2 695 aa7.05□□□□□ -1.28
USF3-204ENST00000496826 PPFIBP2Q8ND30 876 aa7.05□□□□□ -1.28
USF3-204ENST00000496826 CEP135Q66GS9 1140 aa7.05□□□□□ -1.28
USF3-204ENST00000496826 DDX12PQ92771 950 aa7.05□□□□□ -1.28
USF3-204ENST00000496826 ZNF853P0CG23 659 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 CBX1P83916 185 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 RUFY2Q8WXA3 655 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 SREK1Q8WXA9 508 aaKnown RBP7.04□□□□□ -1.28
USF3-204ENST00000496826 SSX2IPQ9Y2D8 614 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 BBXQ8WY36 941 aaPredicted RBP7.04□□□□□ -1.28
USF3-204ENST00000496826 CETN2P41208 172 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 SYNE3Q6ZMZ3 975 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 DDX46Q7L014 1031 aaKnown RBP7.04□□□□□ -1.28
USF3-204ENST00000496826 DNAAF4Q8WXU2 420 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 TRIM63Q969Q1 353 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 FERP16591 822 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 GIMAP4Q9NUV9 329 aa7.04□□□□□ -1.28
USF3-204ENST00000496826 CGNQ9P2M7 1197 aaKnown RBP7.04□□□□□ -1.28
USF3-204ENST00000496826 PPM1FP49593 454 aaPredicted RBP7.03□□□□□ -1.28
USF3-204ENST00000496826 U2SURPO15042 1029 aaKnown RBP7.03□□□□□ -1.28
USF3-204ENST00000496826 EPB41L2O43491 1005 aaKnown RBP7.03□□□□□ -1.28
USF3-204ENST00000496826 CAVIN1Q6NZI2 390 aaKnown RBP7.03□□□□□ -1.28
USF3-204ENST00000496826 KIF3CO14782 793 aa7.03□□□□□ -1.28
USF3-204ENST00000496826 ZNF771Q7L3S4 317 aaPredicted RBP7.03□□□□□ -1.28
USF3-204ENST00000496826 SPC25Q9HBM1 224 aa7.03□□□□□ -1.28
USF3-204ENST00000496826 TCERG1O14776 1098 aaKnown RBP7.03□□□□□ -1.28
USF3-204ENST00000496826 GORABQ5T7V8 394 aa7.03□□□□□ -1.28
USF3-204ENST00000496826 FERMT1Q9BQL6 677 aa7.02□□□□□ -1.28
USF3-204ENST00000496826 ZHX1Q9UKY1 873 aaPredicted RBP7.02□□□□□ -1.28
USF3-204ENST00000496826 CCER2I3L3R5 266 aa7.02□□□□□ -1.29
USF3-204ENST00000496826 SF3A1Q15459 793 aaKnown RBP7.02□□□□□ -1.29
USF3-204ENST00000496826 OFD1O75665 1012 aa7.02□□□□□ -1.29
USF3-204ENST00000496826 CHGAP10645 457 aaKnown RBP7.02□□□□□ -1.29
USF3-204ENST00000496826 STMN1P16949 149 aa7.02□□□□□ -1.29
USF3-204ENST00000496826 FAM107BQ9H098 131 aa7.02□□□□□ -1.29
USF3-204ENST00000496826 MKRN1Q9UHC7 482 aaKnown RBP7.02□□□□□ -1.29
USF3-204ENST00000496826 LEKR1Q6ZMV7 388 aa7.02□□□□□ -1.29
USF3-204ENST00000496826 DZIP1Q86YF9 867 aaKnown RBP7.02□□□□□ -1.29
USF3-204ENST00000496826 TONSLQ96HA7 1378 aa7.02□□□□□ -1.29
USF3-204ENST00000496826 DHX37Q8IY37 1157 aaKnown RBP7.02□□□□□ -1.29
USF3-204ENST00000496826 FAM13BQ9NYF5 915 aa7.01□□□□□ -1.29
USF3-204ENST00000496826 ITPRIPQ8IWB1 547 aa7.01□□□□□ -1.29
USF3-204ENST00000496826 TERF1P54274 439 aa7.01□□□□□ -1.29
USF3-204ENST00000496826 PPFIA2O75334 1257 aa7.01□□□□□ -1.29
USF3-204ENST00000496826 POTEJP0CG39 1038 aa7.01□□□□□ -1.29
USF3-204ENST00000496826 ARID3AQ99856 593 aa7.01□□□□□ -1.29
USF3-204ENST00000496826 PAIP2Q9BPZ3 127 aaKnown RBP7.01□□□□□ -1.29
USF3-204ENST00000496826 CCDC9Q9Y3X0 531 aaKnown RBP7.01□□□□□ -1.29
USF3-204ENST00000496826 ZFYVE27Q5T4F4 411 aa7.01□□□□□ -1.29
USF3-204ENST00000496826 UBE2Q2Q8WVN8 375 aa7.01□□□□□ -1.29
USF3-204ENST00000496826 OPTNQ96CV9 577 aa7.01□□□□□ -1.29
USF3-204ENST00000496826 CCDC89Q8N998 374 aa7□□□□□ -1.29
USF3-204ENST00000496826 WDR66Q8TBY9 1149 aa7□□□□□ -1.29
USF3-204ENST00000496826 DNAJC2Q99543 621 aaKnown RBP7□□□□□ -1.29
USF3-204ENST00000496826 IPO8O15397 1037 aaKnown RBP7□□□□□ -1.29
USF3-204ENST00000496826 ENOX2Q16206 610 aaKnown RBP7□□□□□ -1.29
USF3-204ENST00000496826 PCMTD1Q96MG8 357 aaPredicted RBP7□□□□□ -1.29
USF3-204ENST00000496826 SWAP70Q9UH65 585 aa7□□□□□ -1.29
USF3-204ENST00000496826 PLEKHG5O94827 1062 aa7□□□□□ -1.29
USF3-204ENST00000496826 TRIM5Q9C035 493 aa7□□□□□ -1.29
USF3-204ENST00000496826 NOL3O60936 208 aaKnown RBP7□□□□□ -1.29
USF3-204ENST00000496826 CCDC14Q49A88 953 aa7□□□□□ -1.29
USF3-204ENST00000496826 WDR63Q8IWG1 891 aa7□□□□□ -1.29
USF3-204ENST00000496826 CCDC148Q8NFR7 591 aa7□□□□□ -1.29
USF3-204ENST00000496826 KIAA1524Q8TCG1 905 aa7□□□□□ -1.29
USF3-204ENST00000496826 TRIM29Q14134 588 aa7□□□□□ -1.29
USF3-204ENST00000496826 NEUROD2Q15784 382 aa7□□□□□ -1.29
USF3-204ENST00000496826 C6orf163Q5TEZ5 329 aa7□□□□□ -1.29
USF3-204ENST00000496826 CCDC73Q6ZRK6 1079 aa7□□□□□ -1.29
USF3-204ENST00000496826 CCDC110Q8TBZ0 833 aa7□□□□□ -1.29
USF3-204ENST00000496826 CEP131Q9UPN4 1083 aa6.99□□□□□ -1.29
USF3-204ENST00000496826 TIGD1Q96MW7 591 aa6.99□□□□□ -1.29
USF3-204ENST00000496826 NAA16Q6N069 864 aaPredicted RBP6.99□□□□□ -1.29
USF3-204ENST00000496826 TAOK3Q9H2K8 898 aa6.99□□□□□ -1.29
USF3-204ENST00000496826 DIAPH1O60610 1272 aaKnown RBP6.99□□□□□ -1.29
USF3-204ENST00000496826 FILIP1LQ4L180 1135 aa6.99□□□□□ -1.29
USF3-204ENST00000496826 SEPT14Q6ZU15 432 aa6.99□□□□□ -1.29
USF3-204ENST00000496826 GOLIM4O00461 696 aa6.99□□□□□ -1.29
USF3-204ENST00000496826 ERC2O15083 957 aa6.99□□□□□ -1.29
USF3-204ENST00000496826 TMEM87AQ8NBN3 555 aa6.99□□□□□ -1.29
USF3-204ENST00000496826 CLIP2Q9UDT6 1046 aa6.99□□□□□ -1.29
USF3-204ENST00000496826 BECN2A8MW95 431 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 RSPH6AQ9H0K4 717 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 SSBP05455 408 aaKnown RBP eCLIP6.98□□□□□ -1.29
USF3-204ENST00000496826 FAM184BQ9ULE4 1060 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 RAB3IPQ96QF0 476 aaPredicted RBP6.98□□□□□ -1.29
USF3-204ENST00000496826 ANKRD62A6NC57 917 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 PLCD4Q9BRC7 762 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 TTC12Q9H892 705 aaPredicted RBP6.98□□□□□ -1.29
USF3-204ENST00000496826 BRMS1Q9HCU9 246 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 UQCRHLA0A096LP55 91 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 HSP90AB3PQ58FF7 597 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 PIBF1Q8WXW3 757 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 SMARCE1Q969G3 411 aa6.98□□□□□ -1.29
USF3-204ENST00000496826 DDX11Q96FC9 970 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms