RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TMEM134Q9H6X4 195 aa13.72□□□□□ -0.21
SF3B1-212ENST00000496458 NLRP7Q8WX94 980 aa13.71□□□□□ -0.21
SF3B1-212ENST00000496458 HPS5Q9UPZ3 1129 aa13.71□□□□□ -0.21
SF3B1-212ENST00000496458 PHOX2BQ99453 314 aa13.7□□□□□ -0.22
SF3B1-212ENST00000496458 WBP1LQ9NX94 342 aa13.68□□□□□ -0.22
SF3B1-212ENST00000496458 TSR3Q9UJK0 312 aaKnown RBP13.68□□□□□ -0.22
SF3B1-212ENST00000496458 SLF2Q8IX21 1173 aa13.67□□□□□ -0.22
SF3B1-212ENST00000496458 SLC4A3P48751 1232 aa13.66□□□□□ -0.22
SF3B1-212ENST00000496458 PPP4CP60510 307 aa13.65□□□□□ -0.22
SF3B1-212ENST00000496458 MDM2Q00987 491 aaPredicted RBP13.6□□□□□ -0.23
SF3B1-212ENST00000496458 SLC24A3Q9HC58 644 aa13.6□□□□□ -0.23
SF3B1-212ENST00000496458 DAXXQ9UER7 740 aaPredicted RBP13.6□□□□□ -0.23
SF3B1-212ENST00000496458 NYAP1Q6ZVC0 841 aa13.58□□□□□ -0.24
SF3B1-212ENST00000496458 NECTIN2Q92692 538 aa13.58□□□□□ -0.24
SF3B1-212ENST00000496458 AK7Q96M32 723 aa13.57□□□□□ -0.24
SF3B1-212ENST00000496458 DDX11L8A8MPP1 907 aa13.56□□□□□ -0.24
SF3B1-212ENST00000496458 SLC10A3P09131 477 aa13.55□□□□□ -0.24
SF3B1-212ENST00000496458 APLP1P51693 650 aa13.54□□□□□ -0.24
SF3B1-212ENST00000496458 RDH13Q8NBN7 331 aa13.54□□□□□ -0.24
SF3B1-212ENST00000496458 TRIM66O15016 1216 aa13.53□□□□□ -0.24
SF3B1-212ENST00000496458 CFHP08603 1231 aa13.53□□□□□ -0.24
SF3B1-212ENST00000496458 CLCN1P35523 988 aa13.53□□□□□ -0.24
SF3B1-212ENST00000496458 GPCPD1Q9NPB8 672 aa13.53□□□□□ -0.24
SF3B1-212ENST00000496458 TTLL12Q14166 644 aaPredicted RBP13.52□□□□□ -0.25
SF3B1-212ENST00000496458 TPRNQ4KMQ1 711 aa13.52□□□□□ -0.25
SF3B1-212ENST00000496458 SULF1Q8IWU6 871 aa13.52□□□□□ -0.25
SF3B1-212ENST00000496458 AMHR2Q16671 573 aa13.51□□□□□ -0.25
SF3B1-212ENST00000496458 RSPH4AQ5TD94 716 aa13.51□□□□□ -0.25
SF3B1-212ENST00000496458 KMT5BQ4FZB7 885 aa13.49□□□□□ -0.25
SF3B1-212ENST00000496458 REPIN1Q9BWE0 567 aaKnown RBP13.49□□□□□ -0.25
SF3B1-212ENST00000496458 TMUB1Q9BVT8 246 aa13.48□□□□□ -0.25
SF3B1-212ENST00000496458 PRR14Q9BWN1 585 aa13.48□□□□□ -0.25
SF3B1-212ENST00000496458 PLA2G2EQ9NZK7 142 aa13.46□□□□□ -0.25
SF3B1-212ENST00000496458 PARP9Q8IXQ6 854 aa13.45□□□□□ -0.26
SF3B1-212ENST00000496458 FAM217BQ9NTX9 383 aaPredicted RBP13.45□□□□□ -0.26
SF3B1-212ENST00000496458 ACTN4O43707 911 aaKnown RBP13.44□□□□□ -0.26
SF3B1-212ENST00000496458 CD46P15529 392 aa13.44□□□□□ -0.26
SF3B1-212ENST00000496458 PDE4DQ08499 809 aa13.44□□□□□ -0.26
SF3B1-212ENST00000496458 GIGYF2Q6Y7W6 1299 aaKnown RBP13.44□□□□□ -0.26
SF3B1-212ENST00000496458 MTRQ99707 1265 aa13.43□□□□□ -0.26
SF3B1-212ENST00000496458 PCDHB3Q9Y5E6 796 aa13.43□□□□□ -0.26
SF3B1-212ENST00000496458 ITGBL1O95965 494 aaPredicted RBP13.41□□□□□ -0.26
SF3B1-212ENST00000496458 GCGRP47871 477 aa13.41□□□□□ -0.26
SF3B1-212ENST00000496458 COPS2P61201 443 aa13.41□□□□□ -0.26
SF3B1-212ENST00000496458 SSTR3P32745 418 aaPredicted RBP13.4□□□□□ -0.26
SF3B1-212ENST00000496458 TJAP1Q5JTD0 557 aa13.4□□□□□ -0.26
SF3B1-212ENST00000496458 BLOC1S3Q6QNY0 202 aa13.38□□□□□ -0.27
SF3B1-212ENST00000496458 IL21Q9HBE4 155 aa13.38□□□□□ -0.27
SF3B1-212ENST00000496458 KCNC4Q03721 635 aa13.37□□□□□ -0.27
SF3B1-212ENST00000496458 FUT2Q10981 343 aa13.37□□□□□ -0.27
SF3B1-212ENST00000496458 PUS10Q3MIT2 529 aaKnown RBP13.36□□□□□ -0.27
SF3B1-212ENST00000496458 ZNF516Q92618 1163 aa13.35□□□□□ -0.27
SF3B1-212ENST00000496458 MS4A1P11836 297 aa13.34□□□□□ -0.27
SF3B1-212ENST00000496458 PRKCSHP14314 528 aaPredicted RBP13.34□□□□□ -0.27
SF3B1-212ENST00000496458 KDM4AO75164 1064 aa13.33□□□□□ -0.28
SF3B1-212ENST00000496458 ATP6V1AP38606 617 aa13.32□□□□□ -0.28
SF3B1-212ENST00000496458 IFFO2Q5TF58 517 aa13.31□□□□□ -0.28
SF3B1-212ENST00000496458 BEGAINQ9BUH8 593 aa13.31□□□□□ -0.28
SF3B1-212ENST00000496458 ZPR1O75312 459 aa13.3□□□□□ -0.28
SF3B1-212ENST00000496458 NUTM1Q86Y26 1132 aa13.3□□□□□ -0.28
SF3B1-212ENST00000496458 GPBP1L1Q9HC44 474 aaPredicted RBP13.3□□□□□ -0.28
SF3B1-212ENST00000496458 NR1I2O75469 434 aa13.29□□□□□ -0.28
SF3B1-212ENST00000496458 MORN1Q5T089 497 aa13.29□□□□□ -0.28
SF3B1-212ENST00000496458 GRIPAP1Q4V328 841 aa13.28□□□□□ -0.28
SF3B1-212ENST00000496458 TLL1O43897 1013 aa13.27□□□□□ -0.29
SF3B1-212ENST00000496458 USP46P62068 366 aa13.27□□□□□ -0.29
SF3B1-212ENST00000496458 NKX2-3Q8TAU0 364 aa13.27□□□□□ -0.29
SF3B1-212ENST00000496458 HOXA2O43364 376 aa13.26□□□□□ -0.29
SF3B1-212ENST00000496458 SCUBE3Q8IX30 993 aa13.26□□□□□ -0.29
SF3B1-212ENST00000496458 KDM4CQ9H3R0 1056 aa13.26□□□□□ -0.29
SF3B1-212ENST00000496458 SPIRE2Q8WWL2 714 aa13.25□□□□□ -0.29
SF3B1-212ENST00000496458 HLA-CQ95604 372 aa13.25□□□□□ -0.29
SF3B1-212ENST00000496458 SLC27A5Q9Y2P5 690 aa13.25□□□□□ -0.29
SF3B1-212ENST00000496458 NEUROD2Q15784 382 aa13.23□□□□□ -0.29
SF3B1-212ENST00000496458 A0A0G2JS52 829 aa13.22□□□□□ -0.29
SF3B1-212ENST00000496458 GUCA2AQ02747 115 aa13.22□□□□□ -0.29
SF3B1-212ENST00000496458 TBC1D2Q9BYX2 928 aa13.2□□□□□ -0.3
SF3B1-212ENST00000496458 MOXD2PA6NHM9 499 aa13.18□□□□□ -0.3
SF3B1-212ENST00000496458 ADH1BP00325 375 aa13.18□□□□□ -0.3
SF3B1-212ENST00000496458 RNF19BQ6ZMZ0 732 aa13.18□□□□□ -0.3
SF3B1-212ENST00000496458 SPSB2Q99619 263 aa13.18□□□□□ -0.3
SF3B1-212ENST00000496458 FMNL1O95466 1100 aaPredicted RBP13.17□□□□□ -0.3
SF3B1-212ENST00000496458 NDUFV2P19404 249 aa13.17□□□□□ -0.3
SF3B1-212ENST00000496458 BRPF1P55201 1214 aaPredicted RBP13.17□□□□□ -0.3
SF3B1-212ENST00000496458 DIXDC1Q155Q3 683 aa13.17□□□□□ -0.3
SF3B1-212ENST00000496458 THAP11Q96EK4 314 aa13.17□□□□□ -0.3
SF3B1-212ENST00000496458 FDX1P10109 184 aa13.16□□□□□ -0.3
SF3B1-212ENST00000496458 Q3C1V9 767 aa13.16□□□□□ -0.3
SF3B1-212ENST00000496458 FAM117AQ9C073 453 aa13.16□□□□□ -0.3
SF3B1-212ENST00000496458 PPP1R18Q6NYC8 613 aa13.15□□□□□ -0.3
SF3B1-212ENST00000496458 BRICD5Q6PL45 260 aa13.14□□□□□ -0.31
SF3B1-212ENST00000496458 SALL2Q9Y467 1007 aaPredicted RBP13.14□□□□□ -0.31
SF3B1-212ENST00000496458 S1PR4O95977 384 aa13.13□□□□□ -0.31
SF3B1-212ENST00000496458 GGCXP38435 758 aa13.12□□□□□ -0.31
SF3B1-212ENST00000496458 DDRGK1Q96HY6 314 aa13.12□□□□□ -0.31
SF3B1-212ENST00000496458 SLC6A16Q9GZN6 736 aa13.12□□□□□ -0.31
SF3B1-212ENST00000496458 PCDHGC3Q9UN70 934 aa13.12□□□□□ -0.31
SF3B1-212ENST00000496458 MYSM1Q5VVJ2 828 aa13.11□□□□□ -0.31
SF3B1-212ENST00000496458 RSBN1LQ6PCB5 846 aaPredicted RBP13.11□□□□□ -0.31
SF3B1-212ENST00000496458 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms