RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 SENP3Q9H4L4 574 aaPredicted RBP19.24■□□□□ 0.67
PTPRF-214ENST00000496043 RIMS2Q9UQ26 1411 aa19.24■□□□□ 0.67
PTPRF-214ENST00000496043 IQGAP3Q86VI3 1631 aa19.23■□□□□ 0.67
PTPRF-214ENST00000496043 STRCP1A6NGW2 1772 aa19.23■□□□□ 0.67
PTPRF-214ENST00000496043 TBX22Q9Y458 520 aa19.22■□□□□ 0.67
PTPRF-214ENST00000496043 PLEKHG1Q9ULL1 1385 aa19.21■□□□□ 0.67
PTPRF-214ENST00000496043 ZFYVE9O95405 1425 aa19.21■□□□□ 0.67
PTPRF-214ENST00000496043 TRIM52Q96A61 297 aa19.21■□□□□ 0.67
PTPRF-214ENST00000496043 E9PCH4 1651 aa19.2■□□□□ 0.66
PTPRF-214ENST00000496043 NUTM2DQ5VT03 806 aaPredicted RBP19.2■□□□□ 0.66
PTPRF-214ENST00000496043 NAIPQ13075 1403 aa19.19■□□□□ 0.66
PTPRF-214ENST00000496043 TMEM131LA2VDJ0 1609 aa19.18■□□□□ 0.66
PTPRF-214ENST00000496043 TMEM94Q12767 1356 aa19.18■□□□□ 0.66
PTPRF-214ENST00000496043 RBM33Q96EV2 1170 aaKnown RBP19.16■□□□□ 0.66
PTPRF-214ENST00000496043 ZNF326Q5BKZ1 582 aaKnown RBP19.15■□□□□ 0.66
PTPRF-214ENST00000496043 ILDR2Q71H61 639 aa19.14■□□□□ 0.65
PTPRF-214ENST00000496043 ALKQ9UM73 1620 aa19.14■□□□□ 0.65
PTPRF-214ENST00000496043 HFM1A2PYH4 1435 aa19.13■□□□□ 0.65
PTPRF-214ENST00000496043 SLC4A1APQ9BWU0 796 aaKnown RBP19.12■□□□□ 0.65
PTPRF-214ENST00000496043 MYO5BQ9ULV0 1848 aa19.11■□□□□ 0.65
PTPRF-214ENST00000496043 NKTRP30414 1462 aaKnown RBP19.09■□□□□ 0.65
PTPRF-214ENST00000496043 FAM135BQ49AJ0 1406 aa19.08■□□□□ 0.65
PTPRF-214ENST00000496043 ADAMTS13Q76LX8 1427 aa19.08■□□□□ 0.65
PTPRF-214ENST00000496043 MSH6P52701 1360 aa19.08■□□□□ 0.65
PTPRF-214ENST00000496043 PIK3R4Q99570 1358 aa19.08■□□□□ 0.65
PTPRF-214ENST00000496043 AMOTL2Q9Y2J4 779 aa19.08■□□□□ 0.64
PTPRF-214ENST00000496043 SLAIN2Q9P270 581 aa19.07■□□□□ 0.64
PTPRF-214ENST00000496043 C14orf37Q86TY3 774 aa19.06■□□□□ 0.64
PTPRF-214ENST00000496043 XIRP1Q702N8 1843 aaKnown RBP19.06■□□□□ 0.64
PTPRF-214ENST00000496043 NCOA3Q9Y6Q9 1424 aa19.05■□□□□ 0.64
PTPRF-214ENST00000496043 NWD1Q149M9 1564 aa19.05■□□□□ 0.64
PTPRF-214ENST00000496043 SPHKAPQ2M3C7 1700 aa19.04■□□□□ 0.64
PTPRF-214ENST00000496043 C19orf44Q9H6X5 657 aa19.04■□□□□ 0.64
PTPRF-214ENST00000496043 CHD2O14647 1828 aaKnown RBP19.03■□□□□ 0.64
PTPRF-214ENST00000496043 VGFO15240 615 aaPredicted RBP19.03■□□□□ 0.64
PTPRF-214ENST00000496043 SOCS7O14512 581 aa19.02■□□□□ 0.64
PTPRF-214ENST00000496043 DIP2AQ14689 1571 aa19.02■□□□□ 0.63
PTPRF-214ENST00000496043 ACIN1Q9UKV3 1341 aaKnown RBP19.01■□□□□ 0.63
PTPRF-214ENST00000496043 RPGRIP1LQ68CZ1 1315 aa19■□□□□ 0.63
PTPRF-214ENST00000496043 TRPM2O94759 1503 aa19■□□□□ 0.63
PTPRF-214ENST00000496043 ATF3P18847 181 aa19■□□□□ 0.63
PTPRF-214ENST00000496043 CADPS2Q86UW7 1296 aa19■□□□□ 0.63
PTPRF-214ENST00000496043 MPHOSPH9Q99550 1183 aa19■□□□□ 0.63
PTPRF-214ENST00000496043 PHF23Q9BUL5 403 aaPredicted RBP19■□□□□ 0.63
PTPRF-214ENST00000496043 FOXD1Q16676 465 aa18.99■□□□□ 0.63
PTPRF-214ENST00000496043 CLTCL1P53675 1640 aa18.98■□□□□ 0.63
PTPRF-214ENST00000496043 PTPRUQ92729 1446 aa18.98■□□□□ 0.63
PTPRF-214ENST00000496043 METP08581 1390 aa18.96■□□□□ 0.63
PTPRF-214ENST00000496043 MED1Q15648 1581 aaPredicted RBP18.96■□□□□ 0.63
PTPRF-214ENST00000496043 SETBP1Q9Y6X0 1596 aa18.94■□□□□ 0.62
PTPRF-214ENST00000496043 NEXMIFQ5QGS0 1516 aa18.93■□□□□ 0.62
PTPRF-214ENST00000496043 KIF1BO60333 1816 aa18.93■□□□□ 0.62
PTPRF-214ENST00000496043 SETD5Q9C0A6 1442 aa18.92■□□□□ 0.62
PTPRF-214ENST00000496043 ROBO1Q9Y6N7 1651 aa18.92■□□□□ 0.62
PTPRF-214ENST00000496043 RGL3Q3MIN7 710 aa18.91■□□□□ 0.62
PTPRF-214ENST00000496043 NRXN3Q9Y4C0 1643 aa18.9■□□□□ 0.62
PTPRF-214ENST00000496043 CCDC144AA2RUR9 1427 aa18.9■□□□□ 0.62
PTPRF-214ENST00000496043 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-214ENST00000496043 JCADQ9P266 1359 aa18.85■□□□□ 0.61
PTPRF-214ENST00000496043 BRINP3Q76B58 766 aa18.85■□□□□ 0.61
PTPRF-214ENST00000496043 DCCP43146 1447 aa18.84■□□□□ 0.61
PTPRF-214ENST00000496043 ADGRF5Q8IZF2 1346 aa18.84■□□□□ 0.61
PTPRF-214ENST00000496043 RGS17Q9UGC6 210 aaPredicted RBP18.84■□□□□ 0.61
PTPRF-214ENST00000496043 XRN1Q8IZH2 1706 aaKnown RBP18.83■□□□□ 0.61
PTPRF-214ENST00000496043 ANKRD30BQ9BXX2 1392 aa18.82■□□□□ 0.6
PTPRF-214ENST00000496043 RAB3GAP2Q9H2M9 1393 aa18.81■□□□□ 0.6
PTPRF-214ENST00000496043 SPATA31E1Q6ZUB1 1445 aa18.81■□□□□ 0.6
PTPRF-214ENST00000496043 PHLPP1O60346 1717 aa18.8■□□□□ 0.6
PTPRF-214ENST00000496043 HRCP23327 699 aa18.8■□□□□ 0.6
PTPRF-214ENST00000496043 ADGRL3Q9HAR2 1447 aa18.8■□□□□ 0.6
PTPRF-214ENST00000496043 ROBO2Q9HCK4 1378 aa18.8■□□□□ 0.6
PTPRF-214ENST00000496043 SPATA31A6Q5VVP1 1343 aa18.78■□□□□ 0.6
PTPRF-214ENST00000496043 MST1RQ04912 1400 aa18.78■□□□□ 0.6
PTPRF-214ENST00000496043 STK26Q9P289 416 aa18.78■□□□□ 0.6
PTPRF-214ENST00000496043 PTCH1Q13635 1447 aa18.77■□□□□ 0.6
PTPRF-214ENST00000496043 LRRC59Q96AG4 307 aaKnown RBP18.77■□□□□ 0.6
PTPRF-214ENST00000496043 PPLO60437 1756 aa18.76■□□□□ 0.59
PTPRF-214ENST00000496043 TMEM132EQ6IEE7 984 aa18.76■□□□□ 0.59
PTPRF-214ENST00000496043 MEX3CQ5U5Q3 659 aaKnown RBP18.75■□□□□ 0.59
PTPRF-214ENST00000496043 POTEAQ6S8J7 498 aa18.75■□□□□ 0.59
PTPRF-214ENST00000496043 AHDC1Q5TGY3 1603 aaPredicted RBP18.74■□□□□ 0.59
PTPRF-214ENST00000496043 COL16A1Q07092 1604 aaPredicted RBP18.74■□□□□ 0.59
PTPRF-214ENST00000496043 PRAG1Q86YV5 1406 aa18.74■□□□□ 0.59
PTPRF-214ENST00000496043 WAPLQ7Z5K2 1190 aa18.73■□□□□ 0.59
PTPRF-214ENST00000496043 C14orf93Q9H972 538 aaKnown RBP18.73■□□□□ 0.59
PTPRF-214ENST00000496043 LRPPRCP42704 1394 aaKnown RBP18.72■□□□□ 0.59
PTPRF-214ENST00000496043 ABCC11Q96J66 1382 aa18.72■□□□□ 0.59
PTPRF-214ENST00000496043 DDX17Q92841 729 aaKnown RBP18.72■□□□□ 0.59
PTPRF-214ENST00000496043 ORAI2Q96SN7 254 aa18.72■□□□□ 0.59
PTPRF-214ENST00000496043 C1orf167Q5SNV9 1468 aa18.71■□□□□ 0.59
PTPRF-214ENST00000496043 ASXL1Q8IXJ9 1541 aa18.71■□□□□ 0.59
PTPRF-214ENST00000496043 NUTM2BA6NNL0 878 aaPredicted RBP18.71■□□□□ 0.59
PTPRF-214ENST00000496043 NUTM2EB1AL46 878 aaPredicted RBP18.71■□□□□ 0.59
PTPRF-214ENST00000496043 NUTM2AQ8IVF1 878 aaPredicted RBP18.71■□□□□ 0.59
PTPRF-214ENST00000496043 SETD1AO15047 1707 aaKnown RBP18.71■□□□□ 0.59
PTPRF-214ENST00000496043 CFAP70Q5T0N1 1121 aa18.7■□□□□ 0.58
PTPRF-214ENST00000496043 SIRT1Q96EB6 747 aa18.7■□□□□ 0.58
PTPRF-214ENST00000496043 PIK3C2GO75747 1445 aa18.69■□□□□ 0.58
PTPRF-214ENST00000496043 ESCO1Q5FWF5 840 aa18.68■□□□□ 0.58
PTPRF-214ENST00000496043 ZNF772Q68DY9 489 aaPredicted RBP18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms