RNA–Protein interactions for RNA: ENST00000495784.1

CLCNKA-207, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 5

Gene CLCNKA, Length 727 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-207ENST00000495784 PPP1R15AO75807 674 aaPredicted RBP28.11■■■□□ 2.09
CLCNKA-207ENST00000495784 CHGAP10645 457 aaKnown RBP28.11■■■□□ 2.09
CLCNKA-207ENST00000495784 IQGAP3Q86VI3 1631 aa28.1■■■□□ 2.09
CLCNKA-207ENST00000495784 ZFYVE9O95405 1425 aa28.09■■■□□ 2.09
CLCNKA-207ENST00000495784 E9PCH4 1651 aa28.09■■■□□ 2.09
CLCNKA-207ENST00000495784 TMEM94Q12767 1356 aa28.09■■■□□ 2.09
CLCNKA-207ENST00000495784 RIMS2Q9UQ26 1411 aa28.09■■■□□ 2.09
CLCNKA-207ENST00000495784 MED1Q15648 1581 aaPredicted RBP28.07■■■□□ 2.08
CLCNKA-207ENST00000495784 TMEM131LA2VDJ0 1609 aa28.07■■■□□ 2.08
CLCNKA-207ENST00000495784 PROSER2Q86WR7 435 aaPredicted RBP28.07■■■□□ 2.08
CLCNKA-207ENST00000495784 XIRP1Q702N8 1843 aaKnown RBP28.06■■■□□ 2.08
CLCNKA-207ENST00000495784 PLEKHG1Q9ULL1 1385 aa28.06■■■□□ 2.08
CLCNKA-207ENST00000495784 MYO5BQ9ULV0 1848 aa28.05■■■□□ 2.08
CLCNKA-207ENST00000495784 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.04■■■□□ 2.08
CLCNKA-207ENST00000495784 NKTRP30414 1462 aaKnown RBP28.02■■■□□ 2.08
CLCNKA-207ENST00000495784 RBM33Q96EV2 1170 aaKnown RBP28.02■■■□□ 2.08
CLCNKA-207ENST00000495784 NWD1Q149M9 1564 aa28.01■■■□□ 2.07
CLCNKA-207ENST00000495784 RRBP1Q9P2E9 1410 aaKnown RBP27.98■■■□□ 2.07
CLCNKA-207ENST00000495784 NUTM2DQ5VT03 806 aaPredicted RBP27.97■■■□□ 2.07
CLCNKA-207ENST00000495784 PHF23Q9BUL5 403 aaPredicted RBP27.97■■■□□ 2.07
CLCNKA-207ENST00000495784 FAM135BQ49AJ0 1406 aa27.96■■■□□ 2.07
CLCNKA-207ENST00000495784 TBX22Q9Y458 520 aa27.96■■■□□ 2.07
CLCNKA-207ENST00000495784 MSH6P52701 1360 aa27.94■■■□□ 2.06
CLCNKA-207ENST00000495784 ADAMTS13Q76LX8 1427 aa27.9■■■□□ 2.06
CLCNKA-207ENST00000495784 CHD2O14647 1828 aaKnown RBP27.9■■■□□ 2.06
CLCNKA-207ENST00000495784 DIP2AQ14689 1571 aa27.88■■■□□ 2.05
CLCNKA-207ENST00000495784 NAIPQ13075 1403 aa27.87■■■□□ 2.05
CLCNKA-207ENST00000495784 SPHKAPQ2M3C7 1700 aa27.87■■■□□ 2.05
CLCNKA-207ENST00000495784 PIK3R4Q99570 1358 aa27.86■■■□□ 2.05
CLCNKA-207ENST00000495784 ROBO1Q9Y6N7 1651 aa27.85■■■□□ 2.05
CLCNKA-207ENST00000495784 C14orf37Q86TY3 774 aa27.85■■■□□ 2.05
CLCNKA-207ENST00000495784 ZNF326Q5BKZ1 582 aaKnown RBP27.84■■■□□ 2.05
CLCNKA-207ENST00000495784 SLAIN2Q9P270 581 aa27.84■■■□□ 2.05
CLCNKA-207ENST00000495784 NCOA3Q9Y6Q9 1424 aa27.82■■■□□ 2.04
CLCNKA-207ENST00000495784 TRPM2O94759 1503 aa27.81■■■□□ 2.04
CLCNKA-207ENST00000495784 TRIM52Q96A61 297 aa27.79■■■□□ 2.04
CLCNKA-207ENST00000495784 AMOTL2Q9Y2J4 779 aa27.78■■■□□ 2.04
CLCNKA-207ENST00000495784 HFM1A2PYH4 1435 aa27.77■■■□□ 2.04
CLCNKA-207ENST00000495784 CLTCL1P53675 1640 aa27.75■■■□□ 2.03
CLCNKA-207ENST00000495784 C19orf44Q9H6X5 657 aa27.75■■■□□ 2.03
CLCNKA-207ENST00000495784 SETBP1Q9Y6X0 1596 aa27.74■■■□□ 2.03
CLCNKA-207ENST00000495784 ATF3P18847 181 aa27.74■■■□□ 2.03
CLCNKA-207ENST00000495784 CADPS2Q86UW7 1296 aa27.74■■■□□ 2.03
CLCNKA-207ENST00000495784 PTPRUQ92729 1446 aa27.74■■■□□ 2.03
CLCNKA-207ENST00000495784 NRXN3Q9Y4C0 1643 aa27.71■■■□□ 2.03
CLCNKA-207ENST00000495784 SLC4A1APQ9BWU0 796 aaKnown RBP27.7■■■□□ 2.02
CLCNKA-207ENST00000495784 PHLPP1O60346 1717 aa27.69■■■□□ 2.02
CLCNKA-207ENST00000495784 NEXMIFQ5QGS0 1516 aa27.68■■■□□ 2.02
CLCNKA-207ENST00000495784 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.68■■■□□ 2.02
CLCNKA-207ENST00000495784 RGS17Q9UGC6 210 aaPredicted RBP27.67■■■□□ 2.02
CLCNKA-207ENST00000495784 METP08581 1390 aa27.66■■■□□ 2.02
CLCNKA-207ENST00000495784 JCADQ9P266 1359 aa27.66■■■□□ 2.02
CLCNKA-207ENST00000495784 KIF1BO60333 1816 aa27.66■■■□□ 2.02
CLCNKA-207ENST00000495784 XRN1Q8IZH2 1706 aaKnown RBP27.65■■■□□ 2.02
CLCNKA-207ENST00000495784 DCCP43146 1447 aa27.61■■■□□ 2.01
CLCNKA-207ENST00000495784 VGFO15240 615 aaPredicted RBP27.61■■■□□ 2.01
CLCNKA-207ENST00000495784 COL16A1Q07092 1604 aaPredicted RBP27.59■■■□□ 2.01
CLCNKA-207ENST00000495784 RPGRIP1LQ68CZ1 1315 aa27.57■■■□□ 2
CLCNKA-207ENST00000495784 AHDC1Q5TGY3 1603 aaPredicted RBP27.56■■■□□ 2
CLCNKA-207ENST00000495784 BRINP3Q76B58 766 aa27.56■■■□□ 2
CLCNKA-207ENST00000495784 FOXD1Q16676 465 aa27.54■■■□□ 2
CLCNKA-207ENST00000495784 ADGRL3Q9HAR2 1447 aa27.53■■■□□ 2
CLCNKA-207ENST00000495784 POTEAQ6S8J7 498 aa27.53■■■□□ 2
CLCNKA-207ENST00000495784 SPATA31A6Q5VVP1 1343 aa27.52■■■□□ 2
CLCNKA-207ENST00000495784 MST1RQ04912 1400 aa27.51■■□□□ 1.99
CLCNKA-207ENST00000495784 ASXL1Q8IXJ9 1541 aa27.5■■□□□ 1.99
CLCNKA-207ENST00000495784 CCDC144AA2RUR9 1427 aa27.49■■□□□ 1.99
CLCNKA-207ENST00000495784 MEX3CQ5U5Q3 659 aaKnown RBP27.48■■□□□ 1.99
CLCNKA-207ENST00000495784 MPHOSPH9Q99550 1183 aa27.48■■□□□ 1.99
CLCNKA-207ENST00000495784 PTCH1Q13635 1447 aa27.47■■□□□ 1.99
CLCNKA-207ENST00000495784 NALCNQ8IZF0 1738 aa27.45■■□□□ 1.99
CLCNKA-207ENST00000495784 PPLO60437 1756 aa27.45■■□□□ 1.98
CLCNKA-207ENST00000495784 LRP6O75581 1613 aa27.45■■□□□ 1.98
CLCNKA-207ENST00000495784 SETD1AO15047 1707 aaKnown RBP27.44■■□□□ 1.98
CLCNKA-207ENST00000495784 SHPRHQ149N8 1683 aa27.44■■□□□ 1.98
CLCNKA-207ENST00000495784 ROBO2Q9HCK4 1378 aa27.44■■□□□ 1.98
CLCNKA-207ENST00000495784 RGL3Q3MIN7 710 aa27.42■■□□□ 1.98
CLCNKA-207ENST00000495784 PRAG1Q86YV5 1406 aa27.4■■□□□ 1.98
CLCNKA-207ENST00000495784 SETD5Q9C0A6 1442 aa27.4■■□□□ 1.98
CLCNKA-207ENST00000495784 ACIN1Q9UKV3 1341 aaKnown RBP27.4■■□□□ 1.98
CLCNKA-207ENST00000495784 NHSL1Q5SYE7 1610 aa27.39■■□□□ 1.98
CLCNKA-207ENST00000495784 NUTM2BA6NNL0 878 aaPredicted RBP27.39■■□□□ 1.98
CLCNKA-207ENST00000495784 NUTM2EB1AL46 878 aaPredicted RBP27.39■■□□□ 1.98
CLCNKA-207ENST00000495784 NUTM2AQ8IVF1 878 aaPredicted RBP27.39■■□□□ 1.98
CLCNKA-207ENST00000495784 LRRC59Q96AG4 307 aaKnown RBP27.38■■□□□ 1.97
CLCNKA-207ENST00000495784 SPATA31E1Q6ZUB1 1445 aa27.38■■□□□ 1.97
CLCNKA-207ENST00000495784 ADGRF5Q8IZF2 1346 aa27.38■■□□□ 1.97
CLCNKA-207ENST00000495784 C1orf167Q5SNV9 1468 aa27.38■■□□□ 1.97
CLCNKA-207ENST00000495784 ANKRD30BQ9BXX2 1392 aa27.37■■□□□ 1.97
CLCNKA-207ENST00000495784 DDX17Q92841 729 aaKnown RBP27.37■■□□□ 1.97
CLCNKA-207ENST00000495784 ZNF772Q68DY9 489 aaPredicted RBP27.36■■□□□ 1.97
CLCNKA-207ENST00000495784 ORAI2Q96SN7 254 aa27.3■■□□□ 1.96
CLCNKA-207ENST00000495784 STK26Q9P289 416 aa27.3■■□□□ 1.96
CLCNKA-207ENST00000495784 PNPLA6Q8IY17 1366 aa27.29■■□□□ 1.96
CLCNKA-207ENST00000495784 IFT172Q9UG01 1749 aa27.27■■□□□ 1.96
CLCNKA-207ENST00000495784 LRPPRCP42704 1394 aaKnown RBP27.26■■□□□ 1.95
CLCNKA-207ENST00000495784 PIK3C2GO75747 1445 aa27.25■■□□□ 1.95
CLCNKA-207ENST00000495784 TMEM132EQ6IEE7 984 aa27.25■■□□□ 1.95
CLCNKA-207ENST00000495784 TECPR2O15040 1411 aa27.24■■□□□ 1.95
CLCNKA-207ENST00000495784 RAB3GAP2Q9H2M9 1393 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms