RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 C1orf141Q5JVX7 400 aa24.59■■□□□ 1.53
RNF40-203ENST00000493683 CCDC47Q96A33 483 aaKnown RBP24.59■■□□□ 1.53
RNF40-203ENST00000493683 IPO7O95373 1038 aaKnown RBP24.58■■□□□ 1.53
RNF40-203ENST00000493683 RNF20Q5VTR2 975 aa24.58■■□□□ 1.53
RNF40-203ENST00000493683 TRIM29Q14134 588 aa24.58■■□□□ 1.52
RNF40-203ENST00000493683 COG6Q9Y2V7 657 aa24.58■■□□□ 1.52
RNF40-203ENST00000493683 PES1O00541 588 aaKnown RBP24.57■■□□□ 1.52
RNF40-203ENST00000493683 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.57■■□□□ 1.52
RNF40-203ENST00000493683 DZIP1LQ8IYY4 767 aaKnown RBP24.57■■□□□ 1.52
RNF40-203ENST00000493683 GTF2E1P29083 439 aaPredicted RBP24.56■■□□□ 1.52
RNF40-203ENST00000493683 PLIN1O60240 522 aa24.54■■□□□ 1.52
RNF40-203ENST00000493683 TEFQ10587 303 aa24.54■■□□□ 1.52
RNF40-203ENST00000493683 TEX35Q5T0J7 233 aa24.54■■□□□ 1.52
RNF40-203ENST00000493683 INTS3Q68E01 1043 aaKnown RBP24.53■■□□□ 1.52
RNF40-203ENST00000493683 HSP90AB4PQ58FF6 505 aa24.53■■□□□ 1.52
RNF40-203ENST00000493683 BCL2L13Q9BXK5 485 aa24.52■■□□□ 1.52
RNF40-203ENST00000493683 AMOTL1Q8IY63 956 aa24.52■■□□□ 1.52
RNF40-203ENST00000493683 LTV1Q96GA3 475 aaPredicted RBP24.52■■□□□ 1.52
RNF40-203ENST00000493683 CADPSQ9ULU8 1353 aa24.52■■□□□ 1.52
RNF40-203ENST00000493683 DIAPH1O60610 1272 aaKnown RBP24.51■■□□□ 1.51
RNF40-203ENST00000493683 CCAR2Q8N163 923 aaKnown RBP24.51■■□□□ 1.51
RNF40-203ENST00000493683 APAF1O14727 1248 aa24.51■■□□□ 1.51
RNF40-203ENST00000493683 MCTP1Q6DN14 999 aa24.51■■□□□ 1.51
RNF40-203ENST00000493683 SLC4A3P48751 1232 aa24.5■■□□□ 1.51
RNF40-203ENST00000493683 IFIT2P09913 472 aaKnown RBP24.5■■□□□ 1.51
RNF40-203ENST00000493683 DDX58O95786 925 aaKnown RBP24.49■■□□□ 1.51
RNF40-203ENST00000493683 VPS53Q5VIR6 699 aa24.49■■□□□ 1.51
RNF40-203ENST00000493683 C9orf78Q9NZ63 289 aaPredicted RBP24.49■■□□□ 1.51
RNF40-203ENST00000493683 RUNDC1Q96C34 613 aa24.49■■□□□ 1.51
RNF40-203ENST00000493683 JPH4Q96JJ6 628 aa24.49■■□□□ 1.51
RNF40-203ENST00000493683 ELL2O00472 640 aaPredicted RBP24.48■■□□□ 1.51
RNF40-203ENST00000493683 ANO2Q9NQ90 1003 aa24.48■■□□□ 1.51
RNF40-203ENST00000493683 CPLX1O14810 134 aa24.48■■□□□ 1.51
RNF40-203ENST00000493683 NOL10Q9BSC4 688 aaKnown RBP24.46■■□□□ 1.51
RNF40-203ENST00000493683 ZNF771Q7L3S4 317 aaPredicted RBP24.46■■□□□ 1.51
RNF40-203ENST00000493683 TTC5Q8N0Z6 440 aa24.46■■□□□ 1.51
RNF40-203ENST00000493683 TRDNQ13061 729 aa24.45■■□□□ 1.51
RNF40-203ENST00000493683 BICD2Q8TD16 824 aa24.45■■□□□ 1.51
RNF40-203ENST00000493683 GNAI1P63096 354 aa24.45■■□□□ 1.5
RNF40-203ENST00000493683 NUTM2DQ5VT03 806 aaPredicted RBP24.45■■□□□ 1.5
RNF40-203ENST00000493683 ERC2O15083 957 aa24.44■■□□□ 1.5
RNF40-203ENST00000493683 PRM3Q9NNZ6 103 aa24.44■■□□□ 1.5
RNF40-203ENST00000493683 ARGLU1Q9NWB6 273 aaPredicted RBP24.44■■□□□ 1.5
RNF40-203ENST00000493683 SMC3Q9UQE7 1217 aa24.44■■□□□ 1.5
RNF40-203ENST00000493683 SASS6Q6UVJ0 657 aa24.44■■□□□ 1.5
RNF40-203ENST00000493683 MIA2Q96PC5 1412 aa24.44■■□□□ 1.5
RNF40-203ENST00000493683 ACBD3Q9H3P7 528 aa24.44■■□□□ 1.5
RNF40-203ENST00000493683 FAM43AQ8N2R8 423 aa24.43■■□□□ 1.5
RNF40-203ENST00000493683 ZNF592Q92610 1267 aa24.43■■□□□ 1.5
RNF40-203ENST00000493683 RIPK4P57078 832 aa24.42■■□□□ 1.5
RNF40-203ENST00000493683 MTERF4Q7Z6M4 381 aaKnown RBP24.42■■□□□ 1.5
RNF40-203ENST00000493683 HOMER1Q86YM7 354 aa24.42■■□□□ 1.5
RNF40-203ENST00000493683 MYOM3Q5VTT5 1437 aa24.42■■□□□ 1.5
RNF40-203ENST00000493683 PDE4CQ08493 712 aa24.42■■□□□ 1.5
RNF40-203ENST00000493683 G3BP1Q13283 466 aaKnown RBP eCLIP24.42■■□□□ 1.53e-7■■□□□ 13.3
RNF40-203ENST00000493683 CDR1P51861 262 aa24.41■■□□□ 1.5
RNF40-203ENST00000493683 CCDC73Q6ZRK6 1079 aa24.4■■□□□ 1.5
RNF40-203ENST00000493683 MRE11P49959 708 aa24.4■■□□□ 1.5
RNF40-203ENST00000493683 C22orf23Q9BZE7 217 aa24.4■■□□□ 1.5
RNF40-203ENST00000493683 VSIG10Q8N0Z9 540 aa24.39■■□□□ 1.5
RNF40-203ENST00000493683 PCMTD1Q96MG8 357 aaPredicted RBP24.39■■□□□ 1.5
RNF40-203ENST00000493683 CCDC7Q96M83 1385 aa24.39■■□□□ 1.49
RNF40-203ENST00000493683 FOXD4L6Q3SYB3 417 aaPredicted RBP24.39■■□□□ 1.49
RNF40-203ENST00000493683 FOXD4L3Q6VB84 417 aaPredicted RBP24.39■■□□□ 1.49
RNF40-203ENST00000493683 CNTLNQ9NXG0 1405 aa24.38■■□□□ 1.49
RNF40-203ENST00000493683 MAP7D2Q96T17 732 aa24.38■■□□□ 1.49
RNF40-203ENST00000493683 CCDC39Q9UFE4 941 aa24.37■■□□□ 1.49
RNF40-203ENST00000493683 CDC45O75419 566 aa24.37■■□□□ 1.49
RNF40-203ENST00000493683 CUX1P39880 1505 aa24.37■■□□□ 1.49
RNF40-203ENST00000493683 LETM1O95202 739 aaPredicted RBP24.37■■□□□ 1.49
RNF40-203ENST00000493683 WWC1Q8IX03 1113 aa24.37■■□□□ 1.49
RNF40-203ENST00000493683 SAFBQ15424 915 aaKnown RBP eCLIP24.36■■□□□ 1.49
RNF40-203ENST00000493683 NAT10Q9H0A0 1025 aaKnown RBP24.36■■□□□ 1.49
RNF40-203ENST00000493683 BRD4O60885 1362 aaPredicted RBP24.36■■□□□ 1.49
RNF40-203ENST00000493683 ERICH2A1L162 156 aa24.36■■□□□ 1.49
RNF40-203ENST00000493683 WIZO95785 1651 aa24.35■■□□□ 1.49
RNF40-203ENST00000493683 FKBP5Q13451 457 aaPredicted RBP24.34■■□□□ 1.49
RNF40-203ENST00000493683 AK7Q96M32 723 aa24.34■■□□□ 1.49
RNF40-203ENST00000493683 NUTM2FA1L443 756 aa24.34■■□□□ 1.49
RNF40-203ENST00000493683 VPS37CA5D8V6 355 aaPredicted RBP24.34■■□□□ 1.49
RNF40-203ENST00000493683 MNS1Q8NEH6 495 aa24.33■■□□□ 1.49
RNF40-203ENST00000493683 TCEAL9Q9UHQ7 104 aa24.33■■□□□ 1.49
RNF40-203ENST00000493683 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.33■■□□□ 1.49
RNF40-203ENST00000493683 EIF2S2P20042 333 aaKnown RBP24.33■■□□□ 1.48
RNF40-203ENST00000493683 NINLQ9Y2I6 1382 aa24.33■■□□□ 1.48
RNF40-203ENST00000493683 FAM13BQ9NYF5 915 aa24.32■■□□□ 1.48
RNF40-203ENST00000493683 APPP05067 770 aa24.32■■□□□ 1.48
RNF40-203ENST00000493683 MINK1Q8N4C8 1332 aaPredicted RBP24.32■■□□□ 1.48
RNF40-203ENST00000493683 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.32■■□□□ 1.48
RNF40-203ENST00000493683 PTPRGP23470 1445 aa24.31■■□□□ 1.48
RNF40-203ENST00000493683 NOM1Q5C9Z4 860 aaKnown RBP24.31■■□□□ 1.48
RNF40-203ENST00000493683 PSMA5P28066 241 aa24.31■■□□□ 1.48
RNF40-203ENST00000493683 TRIM34Q9BYJ4 488 aa24.31■■□□□ 1.48
RNF40-203ENST00000493683 MBD3O95983 291 aa24.31■■□□□ 1.48
RNF40-203ENST00000493683 RUFY1Q96T51 708 aa24.31■■□□□ 1.48
RNF40-203ENST00000493683 MCM2P49736 904 aa24.3■■□□□ 1.48
RNF40-203ENST00000493683 EVA1CP58658 441 aa24.3■■□□□ 1.48
RNF40-203ENST00000493683 NFXL1Q6ZNB6 911 aa24.3■■□□□ 1.48
RNF40-203ENST00000493683 IFT57Q9NWB7 429 aa24.29■■□□□ 1.48
RNF40-203ENST00000493683 KIF7Q2M1P5 1343 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms