RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 MSH6P52701 1360 aa27.62■■■□□ 2.01
NUP50-218ENST00000493456 RBM33Q96EV2 1170 aaKnown RBP27.59■■■□□ 2.01
NUP50-218ENST00000493456 POTEAQ6S8J7 498 aa27.58■■■□□ 2.01
NUP50-218ENST00000493456 ZFYVE9O95405 1425 aa27.58■■■□□ 2
NUP50-218ENST00000493456 BCANQ96GW7 911 aa27.57■■■□□ 2
NUP50-218ENST00000493456 PLEKHG1Q9ULL1 1385 aa27.57■■■□□ 2
NUP50-218ENST00000493456 PHLPP1O60346 1717 aa27.55■■■□□ 2
NUP50-218ENST00000493456 SLAIN2Q9P270 581 aa27.54■■■□□ 2
NUP50-218ENST00000493456 ANKRD50Q9ULJ7 1429 aa27.54■■■□□ 2
NUP50-218ENST00000493456 JCADQ9P266 1359 aa27.53■■■□□ 2
NUP50-218ENST00000493456 HDGFP51858 240 aaKnown RBP27.53■■■□□ 2
NUP50-218ENST00000493456 CHD2O14647 1828 aaKnown RBP27.53■■■□□ 2
NUP50-218ENST00000493456 GCC2Q8IWJ2 1684 aa27.52■■■□□ 2
NUP50-218ENST00000493456 RIMS2Q9UQ26 1411 aa27.51■■□□□ 1.99
NUP50-218ENST00000493456 NCOA3Q9Y6Q9 1424 aa27.5■■□□□ 1.99
NUP50-218ENST00000493456 TMEM131LA2VDJ0 1609 aa27.5■■□□□ 1.99
NUP50-218ENST00000493456 PPP1R15AO75807 674 aaPredicted RBP27.5■■□□□ 1.99
NUP50-218ENST00000493456 MYO5BQ9ULV0 1848 aa27.49■■□□□ 1.99
NUP50-218ENST00000493456 COL16A1Q07092 1604 aaPredicted RBP27.46■■□□□ 1.99
NUP50-218ENST00000493456 TBX22Q9Y458 520 aa27.46■■□□□ 1.99
NUP50-218ENST00000493456 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.45■■□□□ 1.98
NUP50-218ENST00000493456 DIP2AQ14689 1571 aa27.44■■□□□ 1.98
NUP50-218ENST00000493456 FAM50AQ14320 339 aaKnown RBP27.44■■□□□ 1.98
NUP50-218ENST00000493456 UNC13BO14795 1591 aa27.43■■□□□ 1.98
NUP50-218ENST00000493456 PIK3R4Q99570 1358 aa27.4■■□□□ 1.98
NUP50-218ENST00000493456 SPATA31A6Q5VVP1 1343 aa27.4■■□□□ 1.98
NUP50-218ENST00000493456 SETD1AO15047 1707 aaKnown RBP27.39■■□□□ 1.98
NUP50-218ENST00000493456 ADAMTS13Q76LX8 1427 aa27.39■■□□□ 1.97
NUP50-218ENST00000493456 AHDC1Q5TGY3 1603 aaPredicted RBP27.38■■□□□ 1.97
NUP50-218ENST00000493456 C14orf37Q86TY3 774 aa27.38■■□□□ 1.97
NUP50-218ENST00000493456 CADPS2Q86UW7 1296 aa27.38■■□□□ 1.97
NUP50-218ENST00000493456 E9PCH4 1651 aa27.36■■□□□ 1.97
NUP50-218ENST00000493456 CHGAP10645 457 aaKnown RBP27.36■■□□□ 1.97
NUP50-218ENST00000493456 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.36■■□□□ 1.97
NUP50-218ENST00000493456 LRP6O75581 1613 aa27.35■■□□□ 1.97
NUP50-218ENST00000493456 C19orf44Q9H6X5 657 aa27.34■■□□□ 1.97
NUP50-218ENST00000493456 SHPRHQ149N8 1683 aa27.33■■□□□ 1.97
NUP50-218ENST00000493456 TRPM2O94759 1503 aa27.33■■□□□ 1.97
NUP50-218ENST00000493456 ATF3P18847 181 aa27.33■■□□□ 1.97
NUP50-218ENST00000493456 IQGAP3Q86VI3 1631 aa27.33■■□□□ 1.97
NUP50-218ENST00000493456 MEX3CQ5U5Q3 659 aaKnown RBP27.31■■□□□ 1.96
NUP50-218ENST00000493456 ZNF772Q68DY9 489 aaPredicted RBP27.31■■□□□ 1.96
NUP50-218ENST00000493456 ROCK1Q13464 1354 aa27.31■■□□□ 1.96
NUP50-218ENST00000493456 NUTM2DQ5VT03 806 aaPredicted RBP27.28■■□□□ 1.96
NUP50-218ENST00000493456 DCCP43146 1447 aa27.27■■□□□ 1.96
NUP50-218ENST00000493456 AMOTL2Q9Y2J4 779 aa27.24■■□□□ 1.95
NUP50-218ENST00000493456 PTPRUQ92729 1446 aa27.23■■□□□ 1.95
NUP50-218ENST00000493456 BRINP3Q76B58 766 aa27.22■■□□□ 1.95
NUP50-218ENST00000493456 XRN1Q8IZH2 1706 aaKnown RBP27.21■■□□□ 1.95
NUP50-218ENST00000493456 NUP155O75694 1391 aa27.21■■□□□ 1.95
NUP50-218ENST00000493456 SETBP1Q9Y6X0 1596 aa27.2■■□□□ 1.94
NUP50-218ENST00000493456 ASXL1Q8IXJ9 1541 aa27.19■■□□□ 1.94
NUP50-218ENST00000493456 UPF1Q92900 1129 aaKnown RBP eCLIP27.18■■□□□ 1.94
NUP50-218ENST00000493456 TRIM52Q96A61 297 aa27.18■■□□□ 1.94
NUP50-218ENST00000493456 NRXN3Q9Y4C0 1643 aa27.18■■□□□ 1.94
NUP50-218ENST00000493456 CDK12Q9NYV4 1490 aaPredicted RBP27.17■■□□□ 1.94
NUP50-218ENST00000493456 SETD5Q9C0A6 1442 aa27.16■■□□□ 1.94
NUP50-218ENST00000493456 RXRBP28702 533 aa27.15■■□□□ 1.94
NUP50-218ENST00000493456 NHSL1Q5SYE7 1610 aa27.15■■□□□ 1.94
NUP50-218ENST00000493456 MST1RQ04912 1400 aa27.15■■□□□ 1.94
NUP50-218ENST00000493456 SPHKAPQ2M3C7 1700 aa27.13■■□□□ 1.93
NUP50-218ENST00000493456 NUTM2BA6NNL0 878 aaPredicted RBP27.11■■□□□ 1.93
NUP50-218ENST00000493456 NUTM2EB1AL46 878 aaPredicted RBP27.11■■□□□ 1.93
NUP50-218ENST00000493456 NUTM2AQ8IVF1 878 aaPredicted RBP27.11■■□□□ 1.93
NUP50-218ENST00000493456 AFF2P51816 1311 aa27.09■■□□□ 1.93
NUP50-218ENST00000493456 ADGRL3Q9HAR2 1447 aa27.08■■□□□ 1.93
NUP50-218ENST00000493456 LRRC59Q96AG4 307 aaKnown RBP27.08■■□□□ 1.93
NUP50-218ENST00000493456 METP08581 1390 aa27.08■■□□□ 1.93
NUP50-218ENST00000493456 ZNF326Q5BKZ1 582 aaKnown RBP27.07■■□□□ 1.92
NUP50-218ENST00000493456 NALCNQ8IZF0 1738 aa27.02■■□□□ 1.92
NUP50-218ENST00000493456 NEXMIFQ5QGS0 1516 aa27.02■■□□□ 1.92
NUP50-218ENST00000493456 ITGAEP38570 1179 aa27.02■■□□□ 1.92
NUP50-218ENST00000493456 PNPLA6Q8IY17 1366 aa27.01■■□□□ 1.91
NUP50-218ENST00000493456 CLTCL1P53675 1640 aa26.99■■□□□ 1.91
NUP50-218ENST00000493456 C8orf37Q96NL8 207 aa26.99■■□□□ 1.91
NUP50-218ENST00000493456 SRCAPQ6ZRS2 3230 aa26.99■■□□□ 1.91
NUP50-218ENST00000493456 RGS12O14924 1447 aa26.98■■□□□ 1.91
NUP50-218ENST00000493456 RBM6P78332 1123 aaKnown RBP26.97■■□□□ 1.91
NUP50-218ENST00000493456 LAMC1P11047 1609 aa26.96■■□□□ 1.91
NUP50-218ENST00000493456 PTCH1Q13635 1447 aa26.96■■□□□ 1.91
NUP50-218ENST00000493456 C1orf167Q5SNV9 1468 aa26.95■■□□□ 1.91
NUP50-218ENST00000493456 QTRT2Q9H974 415 aaKnown RBP26.95■■□□□ 1.9
NUP50-218ENST00000493456 DDX17Q92841 729 aaKnown RBP26.94■■□□□ 1.9
NUP50-218ENST00000493456 KIF1BO60333 1816 aa26.93■■□□□ 1.9
NUP50-218ENST00000493456 PRAG1Q86YV5 1406 aa26.9■■□□□ 1.9
NUP50-218ENST00000493456 NGLY1Q96IV0 654 aa26.88■■□□□ 1.89
NUP50-218ENST00000493456 SOS2Q07890 1332 aaPredicted RBP26.88■■□□□ 1.89
NUP50-218ENST00000493456 VGFO15240 615 aaPredicted RBP26.87■■□□□ 1.89
NUP50-218ENST00000493456 ADAMTS2O95450 1211 aa26.86■■□□□ 1.89
NUP50-218ENST00000493456 ROBO2Q9HCK4 1378 aa26.85■■□□□ 1.89
NUP50-218ENST00000493456 EP400Q96L91 3159 aa26.83■■□□□ 1.89
NUP50-218ENST00000493456 ATAD2Q6PL18 1390 aa26.83■■□□□ 1.88
NUP50-218ENST00000493456 HFM1A2PYH4 1435 aa26.82■■□□□ 1.88
NUP50-218ENST00000493456 COL22A1Q8NFW1 1626 aaPredicted RBP26.82■■□□□ 1.88
NUP50-218ENST00000493456 ORAI2Q96SN7 254 aa26.81■■□□□ 1.88
NUP50-218ENST00000493456 RPGRIP1LQ68CZ1 1315 aa26.81■■□□□ 1.88
NUP50-218ENST00000493456 NAIPQ13075 1403 aa26.81■■□□□ 1.88
NUP50-218ENST00000493456 USP21Q9UK80 565 aa26.8■■□□□ 1.88
NUP50-218ENST00000493456 TRPC5Q9UL62 973 aaPredicted RBP26.8■■□□□ 1.88
NUP50-218ENST00000493456 FNBP4Q8N3X1 1017 aaPredicted RBP26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms