RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 TMEM2Q9UHN6 1383 aa22.76■■□□□ 1.23
HPS4-216ENST00000493455 KDM2AQ9Y2K7 1162 aa22.76■■□□□ 1.23
HPS4-216ENST00000493455 POLR1AO95602 1720 aaPredicted RBP22.76■■□□□ 1.23
HPS4-216ENST00000493455 NEXMIFQ5QGS0 1516 aa22.76■■□□□ 1.23
HPS4-216ENST00000493455 NEURL4Q96JN8 1562 aa22.75■■□□□ 1.23
HPS4-216ENST00000493455 SLIT1O75093 1534 aa22.74■■□□□ 1.23
HPS4-216ENST00000493455 DCAF11Q8TEB1 546 aa22.74■■□□□ 1.23
HPS4-216ENST00000493455 EID1Q9Y6B2 187 aa22.74■■□□□ 1.23
HPS4-216ENST00000493455 TXNDC2Q86VQ3 553 aa22.73■■□□□ 1.23
HPS4-216ENST00000493455 BCANQ96GW7 911 aa22.73■■□□□ 1.23
HPS4-216ENST00000493455 L3MBTL2Q969R5 705 aa22.72■■□□□ 1.23
HPS4-216ENST00000493455 NCKAP5LQ9HCH0 1330 aa22.72■■□□□ 1.23
HPS4-216ENST00000493455 ZFYVE9O95405 1425 aa22.72■■□□□ 1.23
HPS4-216ENST00000493455 ARHGAP23Q9P227 1491 aa22.72■■□□□ 1.23
HPS4-216ENST00000493455 LTKP29376 864 aa22.7■■□□□ 1.22
HPS4-216ENST00000493455 HDGFP51858 240 aaKnown RBP22.7■■□□□ 1.22
HPS4-216ENST00000493455 ANKLE2Q86XL3 938 aa22.7■■□□□ 1.22
HPS4-216ENST00000493455 RPGRIP1LQ68CZ1 1315 aa22.7■■□□□ 1.22
HPS4-216ENST00000493455 SCAF11Q99590 1463 aaKnown RBP22.7■■□□□ 1.22
HPS4-216ENST00000493455 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.69■■□□□ 1.22
HPS4-216ENST00000493455 STRCQ7RTU9 1775 aa22.67■■□□□ 1.22
HPS4-216ENST00000493455 ADGRF5Q8IZF2 1346 aa22.66■■□□□ 1.22
HPS4-216ENST00000493455 IQGAP1P46940 1657 aa22.65■■□□□ 1.22
HPS4-216ENST00000493455 VGFO15240 615 aaPredicted RBP22.65■■□□□ 1.22
HPS4-216ENST00000493455 MYOM2P54296 1465 aa22.63■■□□□ 1.21
HPS4-216ENST00000493455 NPHP4O75161 1426 aaPredicted RBP22.62■■□□□ 1.21
HPS4-216ENST00000493455 PLEKHG1Q9ULL1 1385 aa22.6■■□□□ 1.21
HPS4-216ENST00000493455 NRXN3Q9Y4C0 1643 aa22.58■■□□□ 1.21
HPS4-216ENST00000493455 SLC26A8Q96RN1 970 aa22.58■■□□□ 1.21
HPS4-216ENST00000493455 PIK3C2GO75747 1445 aa22.56■■□□□ 1.2
HPS4-216ENST00000493455 PRAG1Q86YV5 1406 aa22.56■■□□□ 1.2
HPS4-216ENST00000493455 SETBP1Q9Y6X0 1596 aa22.55■■□□□ 1.2
HPS4-216ENST00000493455 MED14O60244 1454 aa22.55■■□□□ 1.2
HPS4-216ENST00000493455 NRXN1Q9ULB1 1477 aa22.55■■□□□ 1.2
HPS4-216ENST00000493455 TIMELESSQ9UNS1 1208 aa22.55■■□□□ 1.2
HPS4-216ENST00000493455 ALKQ9UM73 1620 aa22.54■■□□□ 1.2
HPS4-216ENST00000493455 NBPF8Q3BBV2 869 aa22.53■■□□□ 1.2
HPS4-216ENST00000493455 CFAP70Q5T0N1 1121 aa22.53■■□□□ 1.2
HPS4-216ENST00000493455 STAC3Q96MF2 364 aa22.53■■□□□ 1.2
HPS4-216ENST00000493455 LAMC1P11047 1609 aa22.52■■□□□ 1.2
HPS4-216ENST00000493455 SETD1AO15047 1707 aaKnown RBP22.51■■□□□ 1.19
HPS4-216ENST00000493455 ADAMTS13Q76LX8 1427 aa22.51■■□□□ 1.19
HPS4-216ENST00000493455 TRPM1Q7Z4N2 1603 aa22.5■■□□□ 1.19
HPS4-216ENST00000493455 DIP2AQ14689 1571 aa22.5■■□□□ 1.19
HPS4-216ENST00000493455 TMEM132EQ6IEE7 984 aa22.48■■□□□ 1.19
HPS4-216ENST00000493455 DMRT2Q9Y5R5 561 aa22.48■■□□□ 1.19
HPS4-216ENST00000493455 KIAA1210Q9ULL0 1709 aa22.48■■□□□ 1.19
HPS4-216ENST00000493455 C14orf93Q9H972 538 aaKnown RBP22.46■■□□□ 1.19
HPS4-216ENST00000493455 METP08581 1390 aa22.46■■□□□ 1.19
HPS4-216ENST00000493455 NBPF1Q3BBV0 1214 aa22.45■■□□□ 1.18
HPS4-216ENST00000493455 ASXL1Q8IXJ9 1541 aa22.45■■□□□ 1.18
HPS4-216ENST00000493455 ROCK2O75116 1388 aaKnown RBP22.44■■□□□ 1.18
HPS4-216ENST00000493455 STK26Q9P289 416 aa22.44■■□□□ 1.18
HPS4-216ENST00000493455 TBX22Q9Y458 520 aa22.44■■□□□ 1.18
HPS4-216ENST00000493455 ZEB1P37275 1124 aaPredicted RBP22.42■■□□□ 1.18
HPS4-216ENST00000493455 CHD2O14647 1828 aaKnown RBP22.42■■□□□ 1.18
HPS4-216ENST00000493455 RALGAPBQ86X10 1494 aa22.41■■□□□ 1.18
HPS4-216ENST00000493455 ZNF335Q9H4Z2 1342 aaPredicted RBP22.39■■□□□ 1.18
HPS4-216ENST00000493455 ADGRB1O14514 1584 aa22.39■■□□□ 1.18
HPS4-216ENST00000493455 STRCP1A6NGW2 1772 aa22.39■■□□□ 1.17
HPS4-216ENST00000493455 PTPRUQ92729 1446 aa22.39■■□□□ 1.17
HPS4-216ENST00000493455 CARD11Q9BXL7 1154 aa22.38■■□□□ 1.17
HPS4-216ENST00000493455 TRAK1Q9UPV9 953 aa22.37■■□□□ 1.17
HPS4-216ENST00000493455 AMOTL2Q9Y2J4 779 aa22.37■■□□□ 1.17
HPS4-216ENST00000493455 YTHDC2Q9H6S0 1430 aaKnown RBP22.37■■□□□ 1.17
HPS4-216ENST00000493455 XRN1Q8IZH2 1706 aaKnown RBP22.35■■□□□ 1.17
HPS4-216ENST00000493455 PIK3R4Q99570 1358 aa22.35■■□□□ 1.17
HPS4-216ENST00000493455 NWD1Q149M9 1564 aa22.34■■□□□ 1.17
HPS4-216ENST00000493455 KCNA6P17658 529 aa22.34■■□□□ 1.17
HPS4-216ENST00000493455 LRPPRCP42704 1394 aaKnown RBP22.34■■□□□ 1.17
HPS4-216ENST00000493455 KNDC1Q76NI1 1749 aa22.34■■□□□ 1.17
HPS4-216ENST00000493455 ARHGEF28Q8N1W1 1705 aaKnown RBP22.32■■□□□ 1.16
HPS4-216ENST00000493455 RBM33Q96EV2 1170 aaKnown RBP22.31■■□□□ 1.16
HPS4-216ENST00000493455 SAFB2Q14151 953 aaKnown RBP eCLIP22.3■■□□□ 1.16
HPS4-216ENST00000493455 GPRASP1Q5JY77 1395 aa22.29■■□□□ 1.16
HPS4-216ENST00000493455 CPS1P31327 1500 aa22.29■■□□□ 1.16
HPS4-216ENST00000493455 PROSER2Q86WR7 435 aaPredicted RBP22.28■■□□□ 1.16
HPS4-216ENST00000493455 POGKQ9P215 609 aa22.28■■□□□ 1.16
HPS4-216ENST00000493455 ROBO2Q9HCK4 1378 aa22.27■■□□□ 1.16
HPS4-216ENST00000493455 NKTRP30414 1462 aaKnown RBP22.27■■□□□ 1.16
HPS4-216ENST00000493455 ABCC11Q96J66 1382 aa22.26■■□□□ 1.15
HPS4-216ENST00000493455 WAPLQ7Z5K2 1190 aa22.26■■□□□ 1.15
HPS4-216ENST00000493455 C14orf37Q86TY3 774 aa22.26■■□□□ 1.15
HPS4-216ENST00000493455 PRAM1Q96QH2 718 aa22.26■■□□□ 1.15
HPS4-216ENST00000493455 PLEKHH1Q9ULM0 1364 aa22.25■■□□□ 1.15
HPS4-216ENST00000493455 DLC1Q96QB1 1528 aa22.25■■□□□ 1.15
HPS4-216ENST00000493455 EIF3AQ14152 1382 aaKnown RBP22.25■■□□□ 1.15
HPS4-216ENST00000493455 USP47Q96K76 1375 aa22.25■■□□□ 1.15
HPS4-216ENST00000493455 TECPR2O15040 1411 aa22.24■■□□□ 1.15
HPS4-216ENST00000493455 PTCH1Q13635 1447 aa22.24■■□□□ 1.15
HPS4-216ENST00000493455 QRICH2Q9H0J4 1663 aa22.24■■□□□ 1.15
HPS4-216ENST00000493455 XIRP1Q702N8 1843 aaKnown RBP22.22■■□□□ 1.15
HPS4-216ENST00000493455 LTBP4Q8N2S1 1624 aa22.22■■□□□ 1.15
HPS4-216ENST00000493455 HIRIP3Q9BW71 556 aaPredicted RBP22.21■■□□□ 1.15
HPS4-216ENST00000493455 CENPJQ9HC77 1338 aaPredicted RBP22.21■■□□□ 1.15
HPS4-216ENST00000493455 TMEM94Q12767 1356 aa22.21■■□□□ 1.15
HPS4-216ENST00000493455 LRRC7Q96NW7 1537 aa22.21■■□□□ 1.15
HPS4-216ENST00000493455 MINK1Q8N4C8 1332 aaPredicted RBP22.2■■□□□ 1.14
HPS4-216ENST00000493455 NALCNQ8IZF0 1738 aa22.2■■□□□ 1.14
HPS4-216ENST00000493455 EIF4G2P78344 907 aaKnown RBP eCLIP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms