RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 TOM1O60784 492 aa25.05■■□□□ 1.6
LIME1-208ENST00000493265 NEUROD1Q13562 356 aa25.05■■□□□ 1.6
LIME1-208ENST00000493265 SIN3AQ96ST3 1273 aa25.05■■□□□ 1.6
LIME1-208ENST00000493265 IDI1Q13907 227 aa25.04■■□□□ 1.6
LIME1-208ENST00000493265 SLC52A1Q9NWF4 448 aa25.02■■□□□ 1.6
LIME1-208ENST00000493265 STRCP1A6NGW2 1772 aa25.02■■□□□ 1.6
LIME1-208ENST00000493265 MED1Q15648 1581 aaPredicted RBP25.01■■□□□ 1.59
LIME1-208ENST00000493265 STAG3Q9UJ98 1225 aa25.01■■□□□ 1.59
LIME1-208ENST00000493265 PIK3C2BO00750 1634 aa25■■□□□ 1.59
LIME1-208ENST00000493265 UBR1Q8IWV7 1749 aa25■■□□□ 1.59
LIME1-208ENST00000493265 ALKQ9UM73 1620 aa24.98■■□□□ 1.59
LIME1-208ENST00000493265 RGL3Q3MIN7 710 aa24.95■■□□□ 1.58
LIME1-208ENST00000493265 KIF1BO60333 1816 aa24.95■■□□□ 1.58
LIME1-208ENST00000493265 ZNF326Q5BKZ1 582 aaKnown RBP24.93■■□□□ 1.58
LIME1-208ENST00000493265 ADGRB3O60242 1522 aa24.92■■□□□ 1.58
LIME1-208ENST00000493265 LRRC7Q96NW7 1537 aa24.92■■□□□ 1.58
LIME1-208ENST00000493265 CLSPNQ9HAW4 1339 aa24.92■■□□□ 1.58
LIME1-208ENST00000493265 SENP3Q9H4L4 574 aaPredicted RBP24.91■■□□□ 1.58
LIME1-208ENST00000493265 TMEM131LA2VDJ0 1609 aa24.9■■□□□ 1.58
LIME1-208ENST00000493265 SCAF11Q99590 1463 aaKnown RBP24.9■■□□□ 1.58
LIME1-208ENST00000493265 MYO5BQ9ULV0 1848 aa24.9■■□□□ 1.58
LIME1-208ENST00000493265 SLIT1O75093 1534 aa24.86■■□□□ 1.57
LIME1-208ENST00000493265 SPATA31E1Q6ZUB1 1445 aa24.86■■□□□ 1.57
LIME1-208ENST00000493265 ARHGAP23Q9P227 1491 aa24.85■■□□□ 1.57
LIME1-208ENST00000493265 NUTM2DQ5VT03 806 aaPredicted RBP24.84■■□□□ 1.57
LIME1-208ENST00000493265 TONSLQ96HA7 1378 aa24.83■■□□□ 1.57
LIME1-208ENST00000493265 LTKP29376 864 aa24.83■■□□□ 1.57
LIME1-208ENST00000493265 TXNDC2Q86VQ3 553 aa24.83■■□□□ 1.57
LIME1-208ENST00000493265 KDM5AP29375 1690 aaKnown RBP24.82■■□□□ 1.56
LIME1-208ENST00000493265 XIRP1Q702N8 1843 aaKnown RBP24.82■■□□□ 1.56
LIME1-208ENST00000493265 PHF23Q9BUL5 403 aaPredicted RBP24.81■■□□□ 1.56
LIME1-208ENST00000493265 KDM2AQ9Y2K7 1162 aa24.81■■□□□ 1.56
LIME1-208ENST00000493265 RIMS2Q9UQ26 1411 aa24.79■■□□□ 1.56
LIME1-208ENST00000493265 DCAF11Q8TEB1 546 aa24.79■■□□□ 1.56
LIME1-208ENST00000493265 L3MBTL2Q969R5 705 aa24.79■■□□□ 1.56
LIME1-208ENST00000493265 TMEM2Q9UHN6 1383 aa24.79■■□□□ 1.56
LIME1-208ENST00000493265 EID1Q9Y6B2 187 aa24.78■■□□□ 1.56
LIME1-208ENST00000493265 PPP1R15AO75807 674 aaPredicted RBP24.77■■□□□ 1.56
LIME1-208ENST00000493265 NEXMIFQ5QGS0 1516 aa24.76■■□□□ 1.55
LIME1-208ENST00000493265 RPGRIP1LQ68CZ1 1315 aa24.75■■□□□ 1.55
LIME1-208ENST00000493265 PPLO60437 1756 aa24.73■■□□□ 1.55
LIME1-208ENST00000493265 HDGFP51858 240 aaKnown RBP24.73■■□□□ 1.55
LIME1-208ENST00000493265 ZFYVE9O95405 1425 aa24.72■■□□□ 1.55
LIME1-208ENST00000493265 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.72■■□□□ 1.55
LIME1-208ENST00000493265 BCANQ96GW7 911 aa24.72■■□□□ 1.55
LIME1-208ENST00000493265 IFT172Q9UG01 1749 aa24.72■■□□□ 1.55
LIME1-208ENST00000493265 VGFO15240 615 aaPredicted RBP24.69■■□□□ 1.54
LIME1-208ENST00000493265 ADGRF5Q8IZF2 1346 aa24.68■■□□□ 1.54
LIME1-208ENST00000493265 TIMELESSQ9UNS1 1208 aa24.65■■□□□ 1.54
LIME1-208ENST00000493265 SLC26A8Q96RN1 970 aa24.64■■□□□ 1.54
LIME1-208ENST00000493265 TMEM94Q12767 1356 aa24.64■■□□□ 1.53
LIME1-208ENST00000493265 MYOM2P54296 1465 aa24.64■■□□□ 1.53
LIME1-208ENST00000493265 RBM33Q96EV2 1170 aaKnown RBP24.61■■□□□ 1.53
LIME1-208ENST00000493265 ROBO1Q9Y6N7 1651 aa24.6■■□□□ 1.53
LIME1-208ENST00000493265 PLEKHG1Q9ULL1 1385 aa24.6■■□□□ 1.53
LIME1-208ENST00000493265 KCNA6P17658 529 aa24.6■■□□□ 1.53
LIME1-208ENST00000493265 STAC3Q96MF2 364 aa24.6■■□□□ 1.53
LIME1-208ENST00000493265 PROSER2Q86WR7 435 aaPredicted RBP24.59■■□□□ 1.53
LIME1-208ENST00000493265 FAM135BQ49AJ0 1406 aa24.59■■□□□ 1.53
LIME1-208ENST00000493265 NWD1Q149M9 1564 aa24.59■■□□□ 1.53
LIME1-208ENST00000493265 NBPF8Q3BBV2 869 aa24.58■■□□□ 1.53
LIME1-208ENST00000493265 PRAG1Q86YV5 1406 aa24.58■■□□□ 1.53
LIME1-208ENST00000493265 NRXN1Q9ULB1 1477 aa24.57■■□□□ 1.52
LIME1-208ENST00000493265 PIK3C2GO75747 1445 aa24.56■■□□□ 1.52
LIME1-208ENST00000493265 CFAP70Q5T0N1 1121 aa24.55■■□□□ 1.52
LIME1-208ENST00000493265 NKTRP30414 1462 aaKnown RBP24.55■■□□□ 1.52
LIME1-208ENST00000493265 RGS17Q9UGC6 210 aaPredicted RBP24.54■■□□□ 1.52
LIME1-208ENST00000493265 NRXN3Q9Y4C0 1643 aa24.53■■□□□ 1.52
LIME1-208ENST00000493265 ZEB1P37275 1124 aaPredicted RBP24.53■■□□□ 1.52
LIME1-208ENST00000493265 SETBP1Q9Y6X0 1596 aa24.53■■□□□ 1.52
LIME1-208ENST00000493265 ADAMTS13Q76LX8 1427 aa24.51■■□□□ 1.51
LIME1-208ENST00000493265 CHD2O14647 1828 aaKnown RBP24.5■■□□□ 1.51
LIME1-208ENST00000493265 C14orf93Q9H972 538 aaKnown RBP24.5■■□□□ 1.51
LIME1-208ENST00000493265 TMEM132EQ6IEE7 984 aa24.49■■□□□ 1.51
LIME1-208ENST00000493265 MSH6P52701 1360 aa24.48■■□□□ 1.51
LIME1-208ENST00000493265 NBPF1Q3BBV0 1214 aa24.48■■□□□ 1.51
LIME1-208ENST00000493265 PHLPP1O60346 1717 aa24.47■■□□□ 1.51
LIME1-208ENST00000493265 TRPM1Q7Z4N2 1603 aa24.47■■□□□ 1.51
LIME1-208ENST00000493265 LAMC1P11047 1609 aa24.46■■□□□ 1.51
LIME1-208ENST00000493265 TBX22Q9Y458 520 aa24.46■■□□□ 1.51
LIME1-208ENST00000493265 ROCK2O75116 1388 aaKnown RBP24.45■■□□□ 1.5
LIME1-208ENST00000493265 METP08581 1390 aa24.45■■□□□ 1.5
LIME1-208ENST00000493265 SETD1AO15047 1707 aaKnown RBP24.44■■□□□ 1.5
LIME1-208ENST00000493265 STK26Q9P289 416 aa24.44■■□□□ 1.5
LIME1-208ENST00000493265 DIP2AQ14689 1571 aa24.44■■□□□ 1.5
LIME1-208ENST00000493265 KIAA1210Q9ULL0 1709 aa24.43■■□□□ 1.5
LIME1-208ENST00000493265 RALGAPBQ86X10 1494 aa24.42■■□□□ 1.5
LIME1-208ENST00000493265 ASXL1Q8IXJ9 1541 aa24.41■■□□□ 1.5
LIME1-208ENST00000493265 POTEAQ6S8J7 498 aa24.41■■□□□ 1.5
LIME1-208ENST00000493265 SLAIN2Q9P270 581 aa24.41■■□□□ 1.5
LIME1-208ENST00000493265 CARD11Q9BXL7 1154 aa24.39■■□□□ 1.49
LIME1-208ENST00000493265 ADGRB1O14514 1584 aa24.37■■□□□ 1.49
LIME1-208ENST00000493265 TRAK1Q9UPV9 953 aa24.37■■□□□ 1.49
LIME1-208ENST00000493265 PTPRUQ92729 1446 aa24.36■■□□□ 1.49
LIME1-208ENST00000493265 AMOTL2Q9Y2J4 779 aa24.36■■□□□ 1.49
LIME1-208ENST00000493265 YTHDC2Q9H6S0 1430 aaKnown RBP24.35■■□□□ 1.49
LIME1-208ENST00000493265 COL16A1Q07092 1604 aaPredicted RBP24.35■■□□□ 1.49
LIME1-208ENST00000493265 C14orf37Q86TY3 774 aa24.35■■□□□ 1.49
LIME1-208ENST00000493265 JCADQ9P266 1359 aa24.34■■□□□ 1.49
LIME1-208ENST00000493265 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms