RNA–Protein interactions for RNA: ENST00000492851.1

COL6A1-205, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 435 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-205ENST00000492851 STRCP1A6NGW2 1772 aa18.91■□□□□ 0.62
COL6A1-205ENST00000492851 PLEKHG1Q9ULL1 1385 aa18.9■□□□□ 0.62
COL6A1-205ENST00000492851 SOCS7O14512 581 aa18.89■□□□□ 0.61
COL6A1-205ENST00000492851 RIMS2Q9UQ26 1411 aa18.89■□□□□ 0.61
COL6A1-205ENST00000492851 TBX22Q9Y458 520 aa18.88■□□□□ 0.61
COL6A1-205ENST00000492851 ZFYVE9O95405 1425 aa18.88■□□□□ 0.61
COL6A1-205ENST00000492851 IQGAP3Q86VI3 1631 aa18.88■□□□□ 0.61
COL6A1-205ENST00000492851 TMEM94Q12767 1356 aa18.87■□□□□ 0.61
COL6A1-205ENST00000492851 ALKQ9UM73 1620 aa18.86■□□□□ 0.61
COL6A1-205ENST00000492851 RRBP1Q9P2E9 1410 aaKnown RBP18.86■□□□□ 0.61
COL6A1-205ENST00000492851 TMEM131LA2VDJ0 1609 aa18.85■□□□□ 0.61
COL6A1-205ENST00000492851 NKTRP30414 1462 aaKnown RBP18.84■□□□□ 0.61
COL6A1-205ENST00000492851 FAM135BQ49AJ0 1406 aa18.83■□□□□ 0.61
COL6A1-205ENST00000492851 E9PCH4 1651 aa18.83■□□□□ 0.61
COL6A1-205ENST00000492851 MSH6P52701 1360 aa18.81■□□□□ 0.6
COL6A1-205ENST00000492851 PIK3R4Q99570 1358 aa18.81■□□□□ 0.6
COL6A1-205ENST00000492851 NCOA3Q9Y6Q9 1424 aa18.8■□□□□ 0.6
COL6A1-205ENST00000492851 PHF23Q9BUL5 403 aaPredicted RBP18.79■□□□□ 0.6
COL6A1-205ENST00000492851 NWD1Q149M9 1564 aa18.79■□□□□ 0.6
COL6A1-205ENST00000492851 SENP3Q9H4L4 574 aaPredicted RBP18.77■□□□□ 0.6
COL6A1-205ENST00000492851 SLAIN2Q9P270 581 aa18.77■□□□□ 0.6
COL6A1-205ENST00000492851 MED1Q15648 1581 aaPredicted RBP18.76■□□□□ 0.59
COL6A1-205ENST00000492851 NAIPQ13075 1403 aa18.76■□□□□ 0.59
COL6A1-205ENST00000492851 ZNF326Q5BKZ1 582 aaKnown RBP18.76■□□□□ 0.59
COL6A1-205ENST00000492851 NUTM2DQ5VT03 806 aaPredicted RBP18.76■□□□□ 0.59
COL6A1-205ENST00000492851 RBM33Q96EV2 1170 aaKnown RBP18.76■□□□□ 0.59
COL6A1-205ENST00000492851 XIRP1Q702N8 1843 aaKnown RBP18.75■□□□□ 0.59
COL6A1-205ENST00000492851 DIP2AQ14689 1571 aa18.75■□□□□ 0.59
COL6A1-205ENST00000492851 ADAMTS13Q76LX8 1427 aa18.74■□□□□ 0.59
COL6A1-205ENST00000492851 C14orf37Q86TY3 774 aa18.74■□□□□ 0.59
COL6A1-205ENST00000492851 CADPS2Q86UW7 1296 aa18.73■□□□□ 0.59
COL6A1-205ENST00000492851 TRIM52Q96A61 297 aa18.73■□□□□ 0.59
COL6A1-205ENST00000492851 C19orf44Q9H6X5 657 aa18.73■□□□□ 0.59
COL6A1-205ENST00000492851 MYO5BQ9ULV0 1848 aa18.72■□□□□ 0.59
COL6A1-205ENST00000492851 AMOTL2Q9Y2J4 779 aa18.72■□□□□ 0.59
COL6A1-205ENST00000492851 HFM1A2PYH4 1435 aa18.72■□□□□ 0.59
COL6A1-205ENST00000492851 CHD2O14647 1828 aaKnown RBP18.72■□□□□ 0.59
COL6A1-205ENST00000492851 ATF3P18847 181 aa18.7■□□□□ 0.58
COL6A1-205ENST00000492851 ACIN1Q9UKV3 1341 aaKnown RBP18.7■□□□□ 0.58
COL6A1-205ENST00000492851 TRPM2O94759 1503 aa18.69■□□□□ 0.58
COL6A1-205ENST00000492851 SLC4A1APQ9BWU0 796 aaKnown RBP18.69■□□□□ 0.58
COL6A1-205ENST00000492851 SPHKAPQ2M3C7 1700 aa18.69■□□□□ 0.58
COL6A1-205ENST00000492851 VGFO15240 615 aaPredicted RBP18.67■□□□□ 0.58
COL6A1-205ENST00000492851 RPGRIP1LQ68CZ1 1315 aa18.66■□□□□ 0.58
COL6A1-205ENST00000492851 ROBO1Q9Y6N7 1651 aa18.66■□□□□ 0.58
COL6A1-205ENST00000492851 SETBP1Q9Y6X0 1596 aa18.64■□□□□ 0.58
COL6A1-205ENST00000492851 PTPRUQ92729 1446 aa18.61■□□□□ 0.57
COL6A1-205ENST00000492851 JCADQ9P266 1359 aa18.61■□□□□ 0.57
COL6A1-205ENST00000492851 CLTCL1P53675 1640 aa18.6■□□□□ 0.57
COL6A1-205ENST00000492851 DCCP43146 1447 aa18.6■□□□□ 0.57
COL6A1-205ENST00000492851 METP08581 1390 aa18.59■□□□□ 0.57
COL6A1-205ENST00000492851 NEXMIFQ5QGS0 1516 aa18.58■□□□□ 0.56
COL6A1-205ENST00000492851 KIF1BO60333 1816 aa18.57■□□□□ 0.56
COL6A1-205ENST00000492851 RGS17Q9UGC6 210 aaPredicted RBP18.56■□□□□ 0.56
COL6A1-205ENST00000492851 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.56■□□□□ 0.56
COL6A1-205ENST00000492851 NRXN3Q9Y4C0 1643 aa18.56■□□□□ 0.56
COL6A1-205ENST00000492851 SPATA31A6Q5VVP1 1343 aa18.55■□□□□ 0.56
COL6A1-205ENST00000492851 MPHOSPH9Q99550 1183 aa18.55■□□□□ 0.56
COL6A1-205ENST00000492851 PHLPP1O60346 1717 aa18.54■□□□□ 0.56
COL6A1-205ENST00000492851 BRINP3Q76B58 766 aa18.54■□□□□ 0.56
COL6A1-205ENST00000492851 XRN1Q8IZH2 1706 aaKnown RBP18.53■□□□□ 0.56
COL6A1-205ENST00000492851 CCDC144AA2RUR9 1427 aa18.52■□□□□ 0.56
COL6A1-205ENST00000492851 ADGRL3Q9HAR2 1447 aa18.5■□□□□ 0.55
COL6A1-205ENST00000492851 AHDC1Q5TGY3 1603 aaPredicted RBP18.5■□□□□ 0.55
COL6A1-205ENST00000492851 FOXD1Q16676 465 aa18.5■□□□□ 0.55
COL6A1-205ENST00000492851 LRRC59Q96AG4 307 aaKnown RBP18.49■□□□□ 0.55
COL6A1-205ENST00000492851 PTCH1Q13635 1447 aa18.49■□□□□ 0.55
COL6A1-205ENST00000492851 ANKRD30BQ9BXX2 1392 aa18.48■□□□□ 0.55
COL6A1-205ENST00000492851 MEX3CQ5U5Q3 659 aaKnown RBP18.48■□□□□ 0.55
COL6A1-205ENST00000492851 COL16A1Q07092 1604 aaPredicted RBP18.48■□□□□ 0.55
COL6A1-205ENST00000492851 MST1RQ04912 1400 aa18.48■□□□□ 0.55
COL6A1-205ENST00000492851 RGL3Q3MIN7 710 aa18.47■□□□□ 0.55
COL6A1-205ENST00000492851 ZNF772Q68DY9 489 aaPredicted RBP18.46■□□□□ 0.55
COL6A1-205ENST00000492851 POTEAQ6S8J7 498 aa18.46■□□□□ 0.55
COL6A1-205ENST00000492851 PRAG1Q86YV5 1406 aa18.46■□□□□ 0.55
COL6A1-205ENST00000492851 SETD5Q9C0A6 1442 aa18.46■□□□□ 0.55
COL6A1-205ENST00000492851 ASXL1Q8IXJ9 1541 aa18.44■□□□□ 0.54
COL6A1-205ENST00000492851 ROBO2Q9HCK4 1378 aa18.42■□□□□ 0.54
COL6A1-205ENST00000492851 SPATA31E1Q6ZUB1 1445 aa18.42■□□□□ 0.54
COL6A1-205ENST00000492851 PPLO60437 1756 aa18.41■□□□□ 0.54
COL6A1-205ENST00000492851 ADGRF5Q8IZF2 1346 aa18.41■□□□□ 0.54
COL6A1-205ENST00000492851 C1orf167Q5SNV9 1468 aa18.4■□□□□ 0.54
COL6A1-205ENST00000492851 SHPRHQ149N8 1683 aa18.4■□□□□ 0.54
COL6A1-205ENST00000492851 NUTM2BA6NNL0 878 aaPredicted RBP18.38■□□□□ 0.53
COL6A1-205ENST00000492851 NUTM2EB1AL46 878 aaPredicted RBP18.38■□□□□ 0.53
COL6A1-205ENST00000492851 NUTM2AQ8IVF1 878 aaPredicted RBP18.38■□□□□ 0.53
COL6A1-205ENST00000492851 SETD1AO15047 1707 aaKnown RBP18.37■□□□□ 0.53
COL6A1-205ENST00000492851 HRCP23327 699 aa18.37■□□□□ 0.53
COL6A1-205ENST00000492851 SIRT1Q96EB6 747 aa18.37■□□□□ 0.53
COL6A1-205ENST00000492851 LRPPRCP42704 1394 aaKnown RBP18.37■□□□□ 0.53
COL6A1-205ENST00000492851 ABCC11Q96J66 1382 aa18.37■□□□□ 0.53
COL6A1-205ENST00000492851 LRP6O75581 1613 aa18.36■□□□□ 0.53
COL6A1-205ENST00000492851 NHSL1Q5SYE7 1610 aa18.36■□□□□ 0.53
COL6A1-205ENST00000492851 NALCNQ8IZF0 1738 aa18.36■□□□□ 0.53
COL6A1-205ENST00000492851 STK26Q9P289 416 aa18.36■□□□□ 0.53
COL6A1-205ENST00000492851 TECPR2O15040 1411 aa18.35■□□□□ 0.53
COL6A1-205ENST00000492851 RAB3GAP2Q9H2M9 1393 aa18.35■□□□□ 0.53
COL6A1-205ENST00000492851 SOS2Q07890 1332 aaPredicted RBP18.35■□□□□ 0.53
COL6A1-205ENST00000492851 ORAI2Q96SN7 254 aa18.35■□□□□ 0.53
COL6A1-205ENST00000492851 PIK3C2GO75747 1445 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms