RNA–Protein interactions for RNA: ENST00000492793.1

CLK1-213, Transcript of CDC like kinase 1, humanhuman

TSL 4

Gene CLK1, Length 596 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-213ENST00000492793 RABGEF1Q9UJ41 708 aa8.08□□□□□ -1.12
CLK1-213ENST00000492793 RNF40O75150 1001 aa8.06□□□□□ -1.12
CLK1-213ENST00000492793 STAC3Q96MF2 364 aa8.06□□□□□ -1.12
CLK1-213ENST00000492793 RSPH6AQ9H0K4 717 aa8.06□□□□□ -1.12
CLK1-213ENST00000492793 TMEM134Q9H6X4 195 aa8.06□□□□□ -1.12
CLK1-213ENST00000492793 TIMELESSQ9UNS1 1208 aa8.06□□□□□ -1.12
CLK1-213ENST00000492793 VPS9D1Q9Y2B5 631 aa8.06□□□□□ -1.12
CLK1-213ENST00000492793 SLC4A3P48751 1232 aa8.05□□□□□ -1.12
CLK1-213ENST00000492793 NBPF3Q9H094 633 aa8.05□□□□□ -1.12
CLK1-213ENST00000492793 POLR3EQ9NVU0 708 aa8.05□□□□□ -1.12
CLK1-213ENST00000492793 SWT1Q5T5J6 900 aaKnown RBP8.04□□□□□ -1.12
CLK1-213ENST00000492793 RSPH4AQ5TD94 716 aa8.04□□□□□ -1.12
CLK1-213ENST00000492793 ERICH6Q7L0X2 663 aa8.04□□□□□ -1.12
CLK1-213ENST00000492793 NUTM1Q86Y26 1132 aa8.04□□□□□ -1.12
CLK1-213ENST00000492793 CDAN1Q8IWY9 1227 aa8.04□□□□□ -1.12
CLK1-213ENST00000492793 SLC4A5Q9BY07 1137 aa8.04□□□□□ -1.12
CLK1-213ENST00000492793 POTEB3A0JP26 581 aa8.03□□□□□ -1.12
CLK1-213ENST00000492793 POTEBQ6S5H4 581 aa8.03□□□□□ -1.12
CLK1-213ENST00000492793 DIXDC1Q155Q3 683 aa8.02□□□□□ -1.13
CLK1-213ENST00000492793 FAM98CQ17RN3 349 aaKnown RBP8.02□□□□□ -1.13
CLK1-213ENST00000492793 SH3D19Q5HYK7 790 aa8.02□□□□□ -1.13
CLK1-213ENST00000492793 ANKRD13DQ6ZTN6 518 aa8.02□□□□□ -1.13
CLK1-213ENST00000492793 MRPL50Q8N5N7 158 aaKnown RBP8.02□□□□□ -1.13
CLK1-213ENST00000492793 TBC1D2Q9BYX2 928 aa8.02□□□□□ -1.13
CLK1-213ENST00000492793 GOLGA8CPA6NN73 597 aa8.01□□□□□ -1.13
CLK1-213ENST00000492793 CD46P15529 392 aa8.01□□□□□ -1.13
CLK1-213ENST00000492793 LSM11P83369 360 aaKnown RBP eCLIP8.01□□□□□ -1.13
CLK1-213ENST00000492793 SKIV2LQ15477 1246 aaKnown RBP8.01□□□□□ -1.13
CLK1-213ENST00000492793 GOPCQ9HD26 462 aa8.01□□□□□ -1.13
CLK1-213ENST00000492793 MYSM1Q5VVJ2 828 aa8□□□□□ -1.13
CLK1-213ENST00000492793 SAMD7Q7Z3H4 446 aa8□□□□□ -1.13
CLK1-213ENST00000492793 TK2O00142 265 aa7.99□□□□□ -1.13
CLK1-213ENST00000492793 CLK2P49760 499 aaKnown RBP7.99□□□□□ -1.13
CLK1-213ENST00000492793 ADGRD1Q6QNK2 874 aa7.99□□□□□ -1.13
CLK1-213ENST00000492793 SPIRE2Q8WWL2 714 aa7.99□□□□□ -1.13
CLK1-213ENST00000492793 CSPP1Q1MSJ5 1256 aa7.98□□□□□ -1.13
CLK1-213ENST00000492793 LAPTM4BQ86VI4 370 aa7.98□□□□□ -1.13
CLK1-213ENST00000492793 SLF2Q8IX21 1173 aa7.98□□□□□ -1.13
CLK1-213ENST00000492793 PROCA1Q8NCQ7 364 aaPredicted RBP7.98□□□□□ -1.13
CLK1-213ENST00000492793 ZFRQ96KR1 1074 aaKnown RBP7.98□□□□□ -1.13
CLK1-213ENST00000492793 KDM4AO75164 1064 aa7.96□□□□□ -1.14
CLK1-213ENST00000492793 RIC3Q7Z5B4 369 aa7.96□□□□□ -1.14
CLK1-213ENST00000492793 LRCH3Q96II8 777 aa7.96□□□□□ -1.14
CLK1-213ENST00000492793 BHMG1C9JSJ3 638 aaPredicted RBP7.95□□□□□ -1.14
CLK1-213ENST00000492793 SLC10A3P09131 477 aa7.95□□□□□ -1.14
CLK1-213ENST00000492793 MOXD2PA6NHM9 499 aa7.94□□□□□ -1.14
CLK1-213ENST00000492793 CFHP08603 1231 aa7.94□□□□□ -1.14
CLK1-213ENST00000492793 NDUFV2P19404 249 aa7.94□□□□□ -1.14
CLK1-213ENST00000492793 GCGRP47871 477 aa7.94□□□□□ -1.14
CLK1-213ENST00000492793 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.94□□□□□ -1.14
CLK1-213ENST00000492793 LIMD1Q9UGP4 676 aa7.94□□□□□ -1.14
CLK1-213ENST00000492793 NUTM2BA6NNL0 878 aaPredicted RBP7.93□□□□□ -1.14
CLK1-213ENST00000492793 NUTM2EB1AL46 878 aaPredicted RBP7.93□□□□□ -1.14
CLK1-213ENST00000492793 NUTM2DQ5VT03 806 aaPredicted RBP7.93□□□□□ -1.14
CLK1-213ENST00000492793 NUTM2AQ8IVF1 878 aaPredicted RBP7.93□□□□□ -1.14
CLK1-213ENST00000492793 ANKK1Q8NFD2 765 aa7.93□□□□□ -1.14
CLK1-213ENST00000492793 KMT5BQ4FZB7 885 aa7.92□□□□□ -1.14
CLK1-213ENST00000492793 USP46P62068 366 aa7.91□□□□□ -1.14
CLK1-213ENST00000492793 GRIPAP1Q4V328 841 aa7.91□□□□□ -1.14
CLK1-213ENST00000492793 RSBN1LQ6PCB5 846 aaPredicted RBP7.91□□□□□ -1.14
CLK1-213ENST00000492793 WNT2BQ93097 391 aa7.91□□□□□ -1.14
CLK1-213ENST00000492793 SPTLC1O15269 473 aa7.9□□□□□ -1.14
CLK1-213ENST00000492793 HOXA2O43364 376 aa7.9□□□□□ -1.14
CLK1-213ENST00000492793 HRO43593 1189 aa7.9□□□□□ -1.14
CLK1-213ENST00000492793 FDX1P10109 184 aa7.9□□□□□ -1.14
CLK1-213ENST00000492793 PPP4CP60510 307 aa7.9□□□□□ -1.14
CLK1-213ENST00000492793 GUCA2AQ02747 115 aa7.9□□□□□ -1.14
CLK1-213ENST00000492793 FLIIQ13045 1269 aa7.9□□□□□ -1.14
CLK1-213ENST00000492793 NECTIN2Q92692 538 aa7.9□□□□□ -1.14
CLK1-213ENST00000492793 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.9□□□□□ -1.14
CLK1-213ENST00000492793 BCAMP50895 628 aa7.89□□□□□ -1.15
CLK1-213ENST00000492793 FUT2Q10981 343 aa7.89□□□□□ -1.15
CLK1-213ENST00000492793 SPNS2Q8IVW8 549 aa7.89□□□□□ -1.15
CLK1-213ENST00000492793 HLA-CQ95604 372 aa7.89□□□□□ -1.15
CLK1-213ENST00000492793 HPS5Q9UPZ3 1129 aa7.89□□□□□ -1.15
CLK1-213ENST00000492793 RFC5P40937 340 aa7.88□□□□□ -1.15
CLK1-213ENST00000492793 TSC1Q92574 1164 aa7.88□□□□□ -1.15
CLK1-213ENST00000492793 PCDHB15Q9Y5E8 787 aa7.88□□□□□ -1.15
CLK1-213ENST00000492793 ATP6V1AP38606 617 aa7.87□□□□□ -1.15
CLK1-213ENST00000492793 MMRN1Q13201 1228 aa7.87□□□□□ -1.15
CLK1-213ENST00000492793 QPCTQ16769 361 aa7.87□□□□□ -1.15
CLK1-213ENST00000492793 CABLES1Q8TDN4 633 aa7.87□□□□□ -1.15
CLK1-213ENST00000492793 SOWAHBA6NEL2 793 aa7.86□□□□□ -1.15
CLK1-213ENST00000492793 C6orf229H3BNL8 230 aa7.86□□□□□ -1.15
CLK1-213ENST00000492793 UBTFP17480 764 aaKnown RBP7.86□□□□□ -1.15
CLK1-213ENST00000492793 PUS10Q3MIT2 529 aaKnown RBP7.86□□□□□ -1.15
CLK1-213ENST00000492793 ZBTB3Q9H5J0 574 aa7.86□□□□□ -1.15
CLK1-213ENST00000492793 SUPT5HO00267 1087 aaKnown RBP7.85□□□□□ -1.15
CLK1-213ENST00000492793 AP1G2O75843 785 aa7.85□□□□□ -1.15
CLK1-213ENST00000492793 KCTD12Q96CX2 325 aaKnown RBP7.85□□□□□ -1.15
CLK1-213ENST00000492793 PRR14Q9BWN1 585 aa7.85□□□□□ -1.15
CLK1-213ENST00000492793 KRTAP3-3Q9BYR6 98 aa7.85□□□□□ -1.15
CLK1-213ENST00000492793 KRTAP3-2Q9BYR7 98 aa7.85□□□□□ -1.15
CLK1-213ENST00000492793 ZMYND15Q9H091 742 aa7.85□□□□□ -1.15
CLK1-213ENST00000492793 HRCP23327 699 aa7.84□□□□□ -1.15
CLK1-213ENST00000492793 GJA5P36382 358 aa7.84□□□□□ -1.15
CLK1-213ENST00000492793 TUSC1Q2TAM9 212 aa7.84□□□□□ -1.15
CLK1-213ENST00000492793 TMEM259Q4ZIN3 620 aa7.84□□□□□ -1.15
CLK1-213ENST00000492793 RTL5Q5HYW3 569 aaPredicted RBP7.84□□□□□ -1.15
CLK1-213ENST00000492793 TSR3Q9UJK0 312 aaKnown RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms