RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 NEXMIFQ5QGS0 1516 aa13.74□□□□□ -0.21
USP54-214ENST00000492357 GPRASP1Q5JY77 1395 aa13.74□□□□□ -0.21
USP54-214ENST00000492357 HDGFP51858 240 aaKnown RBP13.74□□□□□ -0.21
USP54-214ENST00000492357 DCAF11Q8TEB1 546 aa13.74□□□□□ -0.21
USP54-214ENST00000492357 ZNF142P52746 1687 aaPredicted RBP13.74□□□□□ -0.21
USP54-214ENST00000492357 A2ML1A8K2U0 1454 aa13.74□□□□□ -0.21
USP54-214ENST00000492357 UBR1Q8IWV7 1749 aa13.73□□□□□ -0.21
USP54-214ENST00000492357 VGFO15240 615 aaPredicted RBP13.73□□□□□ -0.21
USP54-214ENST00000492357 FBXO31Q5XUX0 539 aaPredicted RBP13.73□□□□□ -0.21
USP54-214ENST00000492357 MYO3AQ8NEV4 1616 aa13.72□□□□□ -0.21
USP54-214ENST00000492357 SETBP1Q9Y6X0 1596 aa13.71□□□□□ -0.21
USP54-214ENST00000492357 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.71□□□□□ -0.21
USP54-214ENST00000492357 PTPRMP28827 1452 aa13.7□□□□□ -0.22
USP54-214ENST00000492357 RGL3Q3MIN7 710 aa13.7□□□□□ -0.22
USP54-214ENST00000492357 PIK3C2GO75747 1445 aa13.7□□□□□ -0.22
USP54-214ENST00000492357 SLIT1O75093 1534 aa13.69□□□□□ -0.22
USP54-214ENST00000492357 MYO5BQ9ULV0 1848 aa13.69□□□□□ -0.22
USP54-214ENST00000492357 CEP170BQ9Y4F5 1589 aaPredicted RBP13.69□□□□□ -0.22
USP54-214ENST00000492357 ARHGAP23Q9P227 1491 aa13.68□□□□□ -0.22
USP54-214ENST00000492357 NBPF8Q3BBV2 869 aa13.68□□□□□ -0.22
USP54-214ENST00000492357 ZNF326Q5BKZ1 582 aaKnown RBP13.68□□□□□ -0.22
USP54-214ENST00000492357 STAG3Q9UJ98 1225 aa13.68□□□□□ -0.22
USP54-214ENST00000492357 SLC24A1O60721 1099 aa13.67□□□□□ -0.22
USP54-214ENST00000492357 KCNA4P22459 653 aa13.67□□□□□ -0.22
USP54-214ENST00000492357 EIF4G2P78344 907 aaKnown RBP eCLIP13.66□□□□□ -0.22
USP54-214ENST00000492357 THEMISQ8N1K5 641 aaPredicted RBP13.66□□□□□ -0.22
USP54-214ENST00000492357 TMEM2Q9UHN6 1383 aa13.66□□□□□ -0.22
USP54-214ENST00000492357 RIMS2Q9UQ26 1411 aa13.65□□□□□ -0.22
USP54-214ENST00000492357 ZNF316A6NFI3 1004 aaPredicted RBP13.65□□□□□ -0.22
USP54-214ENST00000492357 CHGAP10645 457 aaKnown RBP13.65□□□□□ -0.22
USP54-214ENST00000492357 ROCK2O75116 1388 aaKnown RBP13.65□□□□□ -0.22
USP54-214ENST00000492357 KDM2AQ9Y2K7 1162 aa13.64□□□□□ -0.23
USP54-214ENST00000492357 SCAF1Q9H7N4 1312 aaKnown RBP13.64□□□□□ -0.23
USP54-214ENST00000492357 IQGAP1P46940 1657 aa13.63□□□□□ -0.23
USP54-214ENST00000492357 EIF3AQ14152 1382 aaKnown RBP13.63□□□□□ -0.23
USP54-214ENST00000492357 C14orf93Q9H972 538 aaKnown RBP13.63□□□□□ -0.23
USP54-214ENST00000492357 DIP2AQ14689 1571 aa13.62□□□□□ -0.23
USP54-214ENST00000492357 SCAF11Q99590 1463 aaKnown RBP13.62□□□□□ -0.23
USP54-214ENST00000492357 CEBPAP49715 358 aaPredicted RBP13.62□□□□□ -0.23
USP54-214ENST00000492357 POLR1AO95602 1720 aaPredicted RBP13.61□□□□□ -0.23
USP54-214ENST00000492357 PLEKHG1Q9ULL1 1385 aa13.61□□□□□ -0.23
USP54-214ENST00000492357 CARD11Q9BXL7 1154 aa13.61□□□□□ -0.23
USP54-214ENST00000492357 ADGRB1O14514 1584 aa13.61□□□□□ -0.23
USP54-214ENST00000492357 ADGRF5Q8IZF2 1346 aa13.61□□□□□ -0.23
USP54-214ENST00000492357 USP47Q96K76 1375 aa13.6□□□□□ -0.23
USP54-214ENST00000492357 EID1Q9Y6B2 187 aa13.6□□□□□ -0.23
USP54-214ENST00000492357 SBNO2Q9Y2G9 1366 aa13.59□□□□□ -0.23
USP54-214ENST00000492357 ALKQ9UM73 1620 aa13.58□□□□□ -0.24
USP54-214ENST00000492357 SETD1AO15047 1707 aaKnown RBP13.58□□□□□ -0.24
USP54-214ENST00000492357 DLC1Q96QB1 1528 aa13.57□□□□□ -0.24
USP54-214ENST00000492357 NRXN3Q9Y4C0 1643 aa13.57□□□□□ -0.24
USP54-214ENST00000492357 PIK3R4Q99570 1358 aa13.56□□□□□ -0.24
USP54-214ENST00000492357 MED14O60244 1454 aa13.55□□□□□ -0.24
USP54-214ENST00000492357 HSPA5P11021 654 aaKnown RBP13.55□□□□□ -0.24
USP54-214ENST00000492357 KNDC1Q76NI1 1749 aa13.55□□□□□ -0.24
USP54-214ENST00000492357 CFAP70Q5T0N1 1121 aa13.54□□□□□ -0.24
USP54-214ENST00000492357 SIRT1Q96EB6 747 aa13.54□□□□□ -0.24
USP54-214ENST00000492357 TECPR2O15040 1411 aa13.54□□□□□ -0.24
USP54-214ENST00000492357 NBPF1Q3BBV0 1214 aa13.53□□□□□ -0.24
USP54-214ENST00000492357 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
USP54-214ENST00000492357 ANKLE2Q86XL3 938 aa13.53□□□□□ -0.24
USP54-214ENST00000492357 ASXL1Q8IXJ9 1541 aa13.53□□□□□ -0.24
USP54-214ENST00000492357 KDM4FA0A1W2PPD8 638 aa13.52□□□□□ -0.25
USP54-214ENST00000492357 TXNDC2Q86VQ3 553 aa13.52□□□□□ -0.25
USP54-214ENST00000492357 TBX22Q9Y458 520 aa13.52□□□□□ -0.25
USP54-214ENST00000492357 ABCC11Q96J66 1382 aa13.52□□□□□ -0.25
USP54-214ENST00000492357 ARHGEF28Q8N1W1 1705 aaKnown RBP13.51□□□□□ -0.25
USP54-214ENST00000492357 ADAMTS13Q76LX8 1427 aa13.51□□□□□ -0.25
USP54-214ENST00000492357 YTHDC2Q9H6S0 1430 aaKnown RBP13.51□□□□□ -0.25
USP54-214ENST00000492357 LRPPRCP42704 1394 aaKnown RBP13.51□□□□□ -0.25
USP54-214ENST00000492357 CDCA8Q53HL2 280 aa13.51□□□□□ -0.25
USP54-214ENST00000492357 CPS1P31327 1500 aa13.5□□□□□ -0.25
USP54-214ENST00000492357 FAM135BQ49AJ0 1406 aa13.5□□□□□ -0.25
USP54-214ENST00000492357 PUS7Q96PZ0 661 aaKnown RBP13.5□□□□□ -0.25
USP54-214ENST00000492357 LTKP29376 864 aa13.49□□□□□ -0.25
USP54-214ENST00000492357 ST20-MTHFSA0A0A6YYL1 179 aa13.48□□□□□ -0.25
USP54-214ENST00000492357 CENPJQ9HC77 1338 aaPredicted RBP13.47□□□□□ -0.25
USP54-214ENST00000492357 TESK2Q96S53 571 aa13.47□□□□□ -0.25
USP54-214ENST00000492357 PTCH1Q13635 1447 aa13.47□□□□□ -0.25
USP54-214ENST00000492357 CCDC7Q96M83 1385 aa13.46□□□□□ -0.25
USP54-214ENST00000492357 TMF1P82094 1093 aa13.46□□□□□ -0.25
USP54-214ENST00000492357 MAPK8IP2Q13387 824 aaPredicted RBP13.46□□□□□ -0.25
USP54-214ENST00000492357 LMTK3Q96Q04 1460 aa13.46□□□□□ -0.25
USP54-214ENST00000492357 QRICH2Q9H0J4 1663 aa13.46□□□□□ -0.26
USP54-214ENST00000492357 NPHP4O75161 1426 aaPredicted RBP13.46□□□□□ -0.26
USP54-214ENST00000492357 XRN1Q8IZH2 1706 aaKnown RBP13.45□□□□□ -0.26
USP54-214ENST00000492357 NUTM2DQ5VT03 806 aaPredicted RBP13.44□□□□□ -0.26
USP54-214ENST00000492357 KIF7Q2M1P5 1343 aa13.42□□□□□ -0.26
USP54-214ENST00000492357 WASHC2AQ641Q2 1341 aa13.42□□□□□ -0.26
USP54-214ENST00000492357 ADGRB2O60241 1585 aa13.42□□□□□ -0.26
USP54-214ENST00000492357 NWD1Q149M9 1564 aa13.42□□□□□ -0.26
USP54-214ENST00000492357 CHD2O14647 1828 aaKnown RBP13.42□□□□□ -0.26
USP54-214ENST00000492357 METP08581 1390 aa13.42□□□□□ -0.26
USP54-214ENST00000492357 TMEM132EQ6IEE7 984 aa13.41□□□□□ -0.26
USP54-214ENST00000492357 CNKSR2Q8WXI2 1034 aa13.41□□□□□ -0.26
USP54-214ENST00000492357 NINLQ9Y2I6 1382 aa13.41□□□□□ -0.26
USP54-214ENST00000492357 BCANQ96GW7 911 aa13.4□□□□□ -0.26
USP54-214ENST00000492357 TRAK1Q9UPV9 953 aa13.4□□□□□ -0.26
USP54-214ENST00000492357 EVC2Q86UK5 1308 aa13.39□□□□□ -0.27
USP54-214ENST00000492357 DIEXFQ68CQ4 756 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms