RNA–Protein interactions for RNA: ENST00000491433.1

CLCNKA-206, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 3

Gene CLCNKA, Length 824 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-206ENST00000491433 KDM5AP29375 1690 aaKnown RBP17.68■□□□□ 0.42
CLCNKA-206ENST00000491433 STAG3Q9UJ98 1225 aa17.68■□□□□ 0.42
CLCNKA-206ENST00000491433 MYOM3Q5VTT5 1437 aa17.67■□□□□ 0.42
CLCNKA-206ENST00000491433 SHPRHQ149N8 1683 aa17.67■□□□□ 0.42
CLCNKA-206ENST00000491433 PRDM15P57071 1507 aaPredicted RBP17.67■□□□□ 0.42
CLCNKA-206ENST00000491433 KCNA6P17658 529 aa17.66■□□□□ 0.42
CLCNKA-206ENST00000491433 TMEM2Q9UHN6 1383 aa17.66■□□□□ 0.42
CLCNKA-206ENST00000491433 ERBINQ96RT1 1412 aa17.65■□□□□ 0.42
CLCNKA-206ENST00000491433 PIK3C2BO00750 1634 aa17.65■□□□□ 0.42
CLCNKA-206ENST00000491433 KANK1Q14678 1352 aa17.65■□□□□ 0.42
CLCNKA-206ENST00000491433 EFCAB6Q5THR3 1501 aa17.62■□□□□ 0.41
CLCNKA-206ENST00000491433 KIF15Q9NS87 1388 aa17.61■□□□□ 0.41
CLCNKA-206ENST00000491433 NKTRP30414 1462 aaKnown RBP17.61■□□□□ 0.41
CLCNKA-206ENST00000491433 C8orf37Q96NL8 207 aa17.6■□□□□ 0.41
CLCNKA-206ENST00000491433 NWD1Q149M9 1564 aa17.59■□□□□ 0.41
CLCNKA-206ENST00000491433 VPS8Q8N3P4 1428 aa17.58■□□□□ 0.41
CLCNKA-206ENST00000491433 EP400Q96L91 3159 aa17.58■□□□□ 0.4
CLCNKA-206ENST00000491433 CROCC2H7BZ55 1655 aa17.58■□□□□ 0.4
CLCNKA-206ENST00000491433 AHDC1Q5TGY3 1603 aaPredicted RBP17.58■□□□□ 0.4
CLCNKA-206ENST00000491433 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.57■□□□□ 0.4
CLCNKA-206ENST00000491433 TET3O43151 1660 aa17.57■□□□□ 0.4
CLCNKA-206ENST00000491433 LMTK2Q8IWU2 1503 aa17.56■□□□□ 0.4
CLCNKA-206ENST00000491433 IDI1Q13907 227 aa17.55■□□□□ 0.4
CLCNKA-206ENST00000491433 RRP7BPQ9NSQ0 103 aa17.55■□□□□ 0.4
CLCNKA-206ENST00000491433 SLC26A8Q96RN1 970 aa17.54■□□□□ 0.4
CLCNKA-206ENST00000491433 SLC52A1Q9NWF4 448 aa17.54■□□□□ 0.4
CLCNKA-206ENST00000491433 HDGFP51858 240 aaKnown RBP17.53■□□□□ 0.4
CLCNKA-206ENST00000491433 BCANQ96GW7 911 aa17.53■□□□□ 0.4
CLCNKA-206ENST00000491433 NHSL1Q5SYE7 1610 aa17.53■□□□□ 0.4
CLCNKA-206ENST00000491433 ADGRB3O60242 1522 aa17.52■□□□□ 0.4
CLCNKA-206ENST00000491433 ABCC5O15440 1437 aa17.52■□□□□ 0.4
CLCNKA-206ENST00000491433 SENP3-EIF4A1A0A087X0R7 540 aa17.51■□□□□ 0.39
CLCNKA-206ENST00000491433 PTPN23Q9H3S7 1636 aa17.5■□□□□ 0.39
CLCNKA-206ENST00000491433 NOS1P29475 1434 aa17.5■□□□□ 0.39
CLCNKA-206ENST00000491433 NCOA3Q9Y6Q9 1424 aa17.5■□□□□ 0.39
CLCNKA-206ENST00000491433 KANK4Q5T7N3 995 aaPredicted RBP17.5■□□□□ 0.39
CLCNKA-206ENST00000491433 ANKRD30AQ9BXX3 1397 aa17.5■□□□□ 0.39
CLCNKA-206ENST00000491433 DIP2AQ14689 1571 aa17.49■□□□□ 0.39
CLCNKA-206ENST00000491433 CHD2O14647 1828 aaKnown RBP17.49■□□□□ 0.39
CLCNKA-206ENST00000491433 DAPK1P53355 1430 aa17.49■□□□□ 0.39
CLCNKA-206ENST00000491433 BLMP54132 1417 aaPredicted RBP17.48■□□□□ 0.39
CLCNKA-206ENST00000491433 HRCP23327 699 aa17.48■□□□□ 0.39
CLCNKA-206ENST00000491433 TRPC5Q9UL62 973 aaPredicted RBP17.48■□□□□ 0.39
CLCNKA-206ENST00000491433 RPRD2Q5VT52 1461 aaKnown RBP17.46■□□□□ 0.39
CLCNKA-206ENST00000491433 PLEKHG1Q9ULL1 1385 aa17.46■□□□□ 0.39
CLCNKA-206ENST00000491433 CADPS2Q86UW7 1296 aa17.46■□□□□ 0.39
CLCNKA-206ENST00000491433 PPP1R15AO75807 674 aaPredicted RBP17.45■□□□□ 0.38
CLCNKA-206ENST00000491433 APLP2Q06481 763 aa17.45■□□□□ 0.38
CLCNKA-206ENST00000491433 SF3B2Q13435 895 aaKnown RBP17.45■□□□□ 0.38
CLCNKA-206ENST00000491433 C14orf37Q86TY3 774 aa17.45■□□□□ 0.38
CLCNKA-206ENST00000491433 PSDA5PKW4 1024 aaPredicted RBP17.44■□□□□ 0.38
CLCNKA-206ENST00000491433 ATF3P18847 181 aa17.43■□□□□ 0.38
CLCNKA-206ENST00000491433 DEFB132Q7Z7B7 95 aa17.43■□□□□ 0.38
CLCNKA-206ENST00000491433 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.43■□□□□ 0.38
CLCNKA-206ENST00000491433 USP21Q9UK80 565 aa17.43■□□□□ 0.38
CLCNKA-206ENST00000491433 TBX22Q9Y458 520 aa17.43■□□□□ 0.38
CLCNKA-206ENST00000491433 SETD5Q9C0A6 1442 aa17.43■□□□□ 0.38
CLCNKA-206ENST00000491433 LRRC59Q96AG4 307 aaKnown RBP17.42■□□□□ 0.38
CLCNKA-206ENST00000491433 ZFYVE9O95405 1425 aa17.41■□□□□ 0.38
CLCNKA-206ENST00000491433 BRINP3Q76B58 766 aa17.41■□□□□ 0.38
CLCNKA-206ENST00000491433 RIMS2Q9UQ26 1411 aa17.4■□□□□ 0.38
CLCNKA-206ENST00000491433 ADAMTS2O95450 1211 aa17.4■□□□□ 0.38
CLCNKA-206ENST00000491433 CHIC2Q9UKJ5 165 aa17.4■□□□□ 0.38
CLCNKA-206ENST00000491433 MYO5BQ9ULV0 1848 aa17.4■□□□□ 0.38
CLCNKA-206ENST00000491433 PIK3R4Q99570 1358 aa17.4■□□□□ 0.38
CLCNKA-206ENST00000491433 GCC2Q8IWJ2 1684 aa17.39■□□□□ 0.37
CLCNKA-206ENST00000491433 C19orf44Q9H6X5 657 aa17.39■□□□□ 0.37
CLCNKA-206ENST00000491433 DCAF8L1A6NGE4 600 aa17.37■□□□□ 0.37
CLCNKA-206ENST00000491433 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.37■□□□□ 0.37
CLCNKA-206ENST00000491433 ADGRL2O95490 1459 aa17.37■□□□□ 0.37
CLCNKA-206ENST00000491433 BCL9LQ86UU0 1499 aa17.37■□□□□ 0.37
CLCNKA-206ENST00000491433 TMEM131LA2VDJ0 1609 aa17.36■□□□□ 0.37
CLCNKA-206ENST00000491433 PNPLA6Q8IY17 1366 aa17.36■□□□□ 0.37
CLCNKA-206ENST00000491433 ATRNO75882 1429 aa17.36■□□□□ 0.37
CLCNKA-206ENST00000491433 ANKRD50Q9ULJ7 1429 aa17.33■□□□□ 0.36
CLCNKA-206ENST00000491433 TRPM2O94759 1503 aa17.32■□□□□ 0.36
CLCNKA-206ENST00000491433 DCCP43146 1447 aa17.32■□□□□ 0.36
CLCNKA-206ENST00000491433 FNBP4Q8N3X1 1017 aaPredicted RBP17.32■□□□□ 0.36
CLCNKA-206ENST00000491433 CHGAP10645 457 aaKnown RBP17.31■□□□□ 0.36
CLCNKA-206ENST00000491433 ASXL1Q8IXJ9 1541 aa17.31■□□□□ 0.36
CLCNKA-206ENST00000491433 ADAMTS13Q76LX8 1427 aa17.3■□□□□ 0.36
CLCNKA-206ENST00000491433 C1QTNF8P60827 252 aa17.29■□□□□ 0.36
CLCNKA-206ENST00000491433 LOC105371045A0A1W2PR82 267 aa17.27■□□□□ 0.36
CLCNKA-206ENST00000491433 AMOTL2Q9Y2J4 779 aa17.27■□□□□ 0.36
CLCNKA-206ENST00000491433 UNC13BO14795 1591 aa17.27■□□□□ 0.35
CLCNKA-206ENST00000491433 ZNF784Q8NCA9 323 aaPredicted RBP17.26■□□□□ 0.35
CLCNKA-206ENST00000491433 PTCH1Q13635 1447 aa17.25■□□□□ 0.35
CLCNKA-206ENST00000491433 BAG6P46379 1132 aa17.25■□□□□ 0.35
CLCNKA-206ENST00000491433 GJD4Q96KN9 370 aaPredicted RBP17.25■□□□□ 0.35
CLCNKA-206ENST00000491433 E9PCH4 1651 aa17.24■□□□□ 0.35
CLCNKA-206ENST00000491433 FAM50AQ14320 339 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-206ENST00000491433 R3HDM1Q15032 1099 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-206ENST00000491433 IQGAP3Q86VI3 1631 aa17.21■□□□□ 0.35
CLCNKA-206ENST00000491433 XRN1Q8IZH2 1706 aaKnown RBP17.2■□□□□ 0.34
CLCNKA-206ENST00000491433 MST1RQ04912 1400 aa17.2■□□□□ 0.34
CLCNKA-206ENST00000491433 PTPRUQ92729 1446 aa17.2■□□□□ 0.34
CLCNKA-206ENST00000491433 DDX17Q92841 729 aaKnown RBP17.18■□□□□ 0.34
CLCNKA-206ENST00000491433 SPHKAPQ2M3C7 1700 aa17.16■□□□□ 0.34
CLCNKA-206ENST00000491433 ROCK1Q13464 1354 aa17.15■□□□□ 0.34
CLCNKA-206ENST00000491433 ADGRL3Q9HAR2 1447 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms