RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 ITGAEP38570 1179 aa24.13■■□□□ 1.45
SMPD4-220ENST00000491319 SLC26A8Q96RN1 970 aa24.1■■□□□ 1.45
SMPD4-220ENST00000491319 CHD2O14647 1828 aaKnown RBP24.1■■□□□ 1.45
SMPD4-220ENST00000491319 RIMS2Q9UQ26 1411 aa24.08■■□□□ 1.44
SMPD4-220ENST00000491319 SPHKAPQ2M3C7 1700 aa24.07■■□□□ 1.44
SMPD4-220ENST00000491319 SENP3Q9H4L4 574 aaPredicted RBP24.07■■□□□ 1.44
SMPD4-220ENST00000491319 NKTRP30414 1462 aaKnown RBP24.07■■□□□ 1.44
SMPD4-220ENST00000491319 NUP155O75694 1391 aa24.05■■□□□ 1.44
SMPD4-220ENST00000491319 TMEM94Q12767 1356 aa24.05■■□□□ 1.44
SMPD4-220ENST00000491319 KCNA6P17658 529 aa24.05■■□□□ 1.44
SMPD4-220ENST00000491319 PLEKHG1Q9ULL1 1385 aa24.04■■□□□ 1.44
SMPD4-220ENST00000491319 SOCS7O14512 581 aa24.04■■□□□ 1.44
SMPD4-220ENST00000491319 RRBP1Q9P2E9 1410 aaKnown RBP24.02■■□□□ 1.44
SMPD4-220ENST00000491319 BCANQ96GW7 911 aa24.02■■□□□ 1.44
SMPD4-220ENST00000491319 CHGAP10645 457 aaKnown RBP24.01■■□□□ 1.43
SMPD4-220ENST00000491319 ROBO1Q9Y6N7 1651 aa24.01■■□□□ 1.43
SMPD4-220ENST00000491319 PPP1R15AO75807 674 aaPredicted RBP24■■□□□ 1.43
SMPD4-220ENST00000491319 PROSER2Q86WR7 435 aaPredicted RBP23.99■■□□□ 1.43
SMPD4-220ENST00000491319 RBM33Q96EV2 1170 aaKnown RBP23.99■■□□□ 1.43
SMPD4-220ENST00000491319 DIP2AQ14689 1571 aa23.98■■□□□ 1.43
SMPD4-220ENST00000491319 ADAMTS13Q76LX8 1427 aa23.95■■□□□ 1.42
SMPD4-220ENST00000491319 HDGFP51858 240 aaKnown RBP23.95■■□□□ 1.42
SMPD4-220ENST00000491319 NUTM2DQ5VT03 806 aaPredicted RBP23.95■■□□□ 1.42
SMPD4-220ENST00000491319 FAM135BQ49AJ0 1406 aa23.94■■□□□ 1.42
SMPD4-220ENST00000491319 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.93■■□□□ 1.42
SMPD4-220ENST00000491319 CLTCL1P53675 1640 aa23.92■■□□□ 1.42
SMPD4-220ENST00000491319 NRXN3Q9Y4C0 1643 aa23.92■■□□□ 1.42
SMPD4-220ENST00000491319 NAIPQ13075 1403 aa23.92■■□□□ 1.42
SMPD4-220ENST00000491319 KIF1BO60333 1816 aa23.91■■□□□ 1.42
SMPD4-220ENST00000491319 MSH6P52701 1360 aa23.91■■□□□ 1.42
SMPD4-220ENST00000491319 TRPM2O94759 1503 aa23.89■■□□□ 1.42
SMPD4-220ENST00000491319 TBX22Q9Y458 520 aa23.89■■□□□ 1.41
SMPD4-220ENST00000491319 PHLPP1O60346 1717 aa23.87■■□□□ 1.41
SMPD4-220ENST00000491319 PHF23Q9BUL5 403 aaPredicted RBP23.87■■□□□ 1.41
SMPD4-220ENST00000491319 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.87■■□□□ 1.41
SMPD4-220ENST00000491319 SETBP1Q9Y6X0 1596 aa23.86■■□□□ 1.41
SMPD4-220ENST00000491319 XRN1Q8IZH2 1706 aaKnown RBP23.85■■□□□ 1.41
SMPD4-220ENST00000491319 PIK3R4Q99570 1358 aa23.84■■□□□ 1.41
SMPD4-220ENST00000491319 NEXMIFQ5QGS0 1516 aa23.83■■□□□ 1.41
SMPD4-220ENST00000491319 HFM1A2PYH4 1435 aa23.83■■□□□ 1.4
SMPD4-220ENST00000491319 PTPRUQ92729 1446 aa23.83■■□□□ 1.4
SMPD4-220ENST00000491319 NCOA3Q9Y6Q9 1424 aa23.81■■□□□ 1.4
SMPD4-220ENST00000491319 COL16A1Q07092 1604 aaPredicted RBP23.78■■□□□ 1.4
SMPD4-220ENST00000491319 ZNF326Q5BKZ1 582 aaKnown RBP23.78■■□□□ 1.4
SMPD4-220ENST00000491319 SLAIN2Q9P270 581 aa23.78■■□□□ 1.4
SMPD4-220ENST00000491319 C14orf37Q86TY3 774 aa23.77■■□□□ 1.4
SMPD4-220ENST00000491319 AMOTL2Q9Y2J4 779 aa23.75■■□□□ 1.39
SMPD4-220ENST00000491319 SETD1AO15047 1707 aaKnown RBP23.75■■□□□ 1.39
SMPD4-220ENST00000491319 TRIM52Q96A61 297 aa23.73■■□□□ 1.39
SMPD4-220ENST00000491319 PPLO60437 1756 aa23.73■■□□□ 1.39
SMPD4-220ENST00000491319 NALCNQ8IZF0 1738 aa23.72■■□□□ 1.39
SMPD4-220ENST00000491319 AHDC1Q5TGY3 1603 aaPredicted RBP23.71■■□□□ 1.39
SMPD4-220ENST00000491319 METP08581 1390 aa23.71■■□□□ 1.39
SMPD4-220ENST00000491319 RGS17Q9UGC6 210 aaPredicted RBP23.71■■□□□ 1.39
SMPD4-220ENST00000491319 C19orf44Q9H6X5 657 aa23.7■■□□□ 1.38
SMPD4-220ENST00000491319 CADPS2Q86UW7 1296 aa23.69■■□□□ 1.38
SMPD4-220ENST00000491319 ATF3P18847 181 aa23.68■■□□□ 1.38
SMPD4-220ENST00000491319 DCCP43146 1447 aa23.67■■□□□ 1.38
SMPD4-220ENST00000491319 SLC4A1APQ9BWU0 796 aaKnown RBP23.67■■□□□ 1.38
SMPD4-220ENST00000491319 SHPRHQ149N8 1683 aa23.67■■□□□ 1.38
SMPD4-220ENST00000491319 JCADQ9P266 1359 aa23.66■■□□□ 1.38
SMPD4-220ENST00000491319 NHSL1Q5SYE7 1610 aa23.64■■□□□ 1.38
SMPD4-220ENST00000491319 ASXL1Q8IXJ9 1541 aa23.63■■□□□ 1.37
SMPD4-220ENST00000491319 ADGRL3Q9HAR2 1447 aa23.62■■□□□ 1.37
SMPD4-220ENST00000491319 MST1RQ04912 1400 aa23.61■■□□□ 1.37
SMPD4-220ENST00000491319 IFT172Q9UG01 1749 aa23.61■■□□□ 1.37
SMPD4-220ENST00000491319 LRP6O75581 1613 aa23.6■■□□□ 1.37
SMPD4-220ENST00000491319 FOXD1Q16676 465 aa23.59■■□□□ 1.37
SMPD4-220ENST00000491319 BRINP3Q76B58 766 aa23.59■■□□□ 1.37
SMPD4-220ENST00000491319 POTEAQ6S8J7 498 aa23.58■■□□□ 1.37
SMPD4-220ENST00000491319 PTCH1Q13635 1447 aa23.57■■□□□ 1.36
SMPD4-220ENST00000491319 VGFO15240 615 aaPredicted RBP23.56■■□□□ 1.36
SMPD4-220ENST00000491319 RPGRIP1LQ68CZ1 1315 aa23.55■■□□□ 1.36
SMPD4-220ENST00000491319 CCDC144AA2RUR9 1427 aa23.54■■□□□ 1.36
SMPD4-220ENST00000491319 PRAG1Q86YV5 1406 aa23.53■■□□□ 1.36
SMPD4-220ENST00000491319 SPATA31A6Q5VVP1 1343 aa23.53■■□□□ 1.36
SMPD4-220ENST00000491319 ROBO2Q9HCK4 1378 aa23.52■■□□□ 1.36
SMPD4-220ENST00000491319 SPATA31E1Q6ZUB1 1445 aa23.5■■□□□ 1.35
SMPD4-220ENST00000491319 MPHOSPH9Q99550 1183 aa23.49■■□□□ 1.35
SMPD4-220ENST00000491319 SETD5Q9C0A6 1442 aa23.49■■□□□ 1.35
SMPD4-220ENST00000491319 LAMC1P11047 1609 aa23.48■■□□□ 1.35
SMPD4-220ENST00000491319 C1orf167Q5SNV9 1468 aa23.47■■□□□ 1.35
SMPD4-220ENST00000491319 MEX3CQ5U5Q3 659 aaKnown RBP23.46■■□□□ 1.35
SMPD4-220ENST00000491319 KNDC1Q76NI1 1749 aa23.46■■□□□ 1.35
SMPD4-220ENST00000491319 ADGRF5Q8IZF2 1346 aa23.45■■□□□ 1.34
SMPD4-220ENST00000491319 DDX17Q92841 729 aaKnown RBP23.45■■□□□ 1.34
SMPD4-220ENST00000491319 RGL3Q3MIN7 710 aa23.44■■□□□ 1.34
SMPD4-220ENST00000491319 CDC42BPGQ6DT37 1551 aa23.43■■□□□ 1.34
SMPD4-220ENST00000491319 ANKRD30BQ9BXX2 1392 aa23.41■■□□□ 1.34
SMPD4-220ENST00000491319 NUTM2BA6NNL0 878 aaPredicted RBP23.41■■□□□ 1.34
SMPD4-220ENST00000491319 NUTM2EB1AL46 878 aaPredicted RBP23.41■■□□□ 1.34
SMPD4-220ENST00000491319 NUTM2AQ8IVF1 878 aaPredicted RBP23.41■■□□□ 1.34
SMPD4-220ENST00000491319 PIK3C2GO75747 1445 aa23.41■■□□□ 1.34
SMPD4-220ENST00000491319 PNPLA6Q8IY17 1366 aa23.4■■□□□ 1.34
SMPD4-220ENST00000491319 LRRC59Q96AG4 307 aaKnown RBP23.38■■□□□ 1.33
SMPD4-220ENST00000491319 TECPR2O15040 1411 aa23.38■■□□□ 1.33
SMPD4-220ENST00000491319 ZNF772Q68DY9 489 aaPredicted RBP23.36■■□□□ 1.33
SMPD4-220ENST00000491319 ORAI2Q96SN7 254 aa23.36■■□□□ 1.33
SMPD4-220ENST00000491319 RAB3GAP2Q9H2M9 1393 aa23.36■■□□□ 1.33
SMPD4-220ENST00000491319 FMN2Q9NZ56 1722 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms