RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 RGL3Q3MIN7 710 aa28.05■■■□□ 2.08
CCM2-216ENST00000488727 LTKP29376 864 aa28.04■■■□□ 2.08
CCM2-216ENST00000488727 PPLO60437 1756 aa28.04■■■□□ 2.08
CCM2-216ENST00000488727 IFT172Q9UG01 1749 aa28.03■■■□□ 2.08
CCM2-216ENST00000488727 NCKAP5LQ9HCH0 1330 aa28.03■■■□□ 2.08
CCM2-216ENST00000488727 SCAF11Q99590 1463 aaKnown RBP28.03■■■□□ 2.08
CCM2-216ENST00000488727 ANKLE2Q86XL3 938 aa28.02■■■□□ 2.08
CCM2-216ENST00000488727 TXNDC2Q86VQ3 553 aa28.01■■■□□ 2.07
CCM2-216ENST00000488727 NUTM2DQ5VT03 806 aaPredicted RBP28.01■■■□□ 2.07
CCM2-216ENST00000488727 NEUROD1Q13562 356 aa28■■■□□ 2.07
CCM2-216ENST00000488727 EID1Q9Y6B2 187 aa27.98■■■□□ 2.07
CCM2-216ENST00000488727 RPGRIP1LQ68CZ1 1315 aa27.97■■■□□ 2.07
CCM2-216ENST00000488727 CLSPNQ9HAW4 1339 aa27.97■■■□□ 2.07
CCM2-216ENST00000488727 MED14O60244 1454 aa27.97■■■□□ 2.07
CCM2-216ENST00000488727 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.95■■■□□ 2.07
CCM2-216ENST00000488727 IQGAP1P46940 1657 aa27.95■■■□□ 2.06
CCM2-216ENST00000488727 NPHP4O75161 1426 aaPredicted RBP27.93■■■□□ 2.06
CCM2-216ENST00000488727 HDGFP51858 240 aaKnown RBP27.93■■■□□ 2.06
CCM2-216ENST00000488727 PPP1R15AO75807 674 aaPredicted RBP27.92■■■□□ 2.06
CCM2-216ENST00000488727 SENP3Q9H4L4 574 aaPredicted RBP27.91■■■□□ 2.06
CCM2-216ENST00000488727 PLEKHG1Q9ULL1 1385 aa27.91■■■□□ 2.06
CCM2-216ENST00000488727 NRXN3Q9Y4C0 1643 aa27.89■■■□□ 2.06
CCM2-216ENST00000488727 MYOM2P54296 1465 aa27.88■■■□□ 2.05
CCM2-216ENST00000488727 ADGRF5Q8IZF2 1346 aa27.88■■■□□ 2.05
CCM2-216ENST00000488727 VGFO15240 615 aaPredicted RBP27.88■■■□□ 2.05
CCM2-216ENST00000488727 DCAF11Q8TEB1 546 aa27.87■■■□□ 2.05
CCM2-216ENST00000488727 L3MBTL2Q969R5 705 aa27.87■■■□□ 2.05
CCM2-216ENST00000488727 SETBP1Q9Y6X0 1596 aa27.86■■■□□ 2.05
CCM2-216ENST00000488727 NRXN1Q9ULB1 1477 aa27.84■■■□□ 2.05
CCM2-216ENST00000488727 KDM2AQ9Y2K7 1162 aa27.84■■■□□ 2.05
CCM2-216ENST00000488727 ADAMTS13Q76LX8 1427 aa27.83■■■□□ 2.05
CCM2-216ENST00000488727 DMRT2Q9Y5R5 561 aa27.83■■■□□ 2.05
CCM2-216ENST00000488727 TONSLQ96HA7 1378 aa27.82■■■□□ 2.04
CCM2-216ENST00000488727 PIK3C2GO75747 1445 aa27.82■■■□□ 2.04
CCM2-216ENST00000488727 BCANQ96GW7 911 aa27.81■■■□□ 2.04
CCM2-216ENST00000488727 SLC26A8Q96RN1 970 aa27.81■■■□□ 2.04
CCM2-216ENST00000488727 SETD1AO15047 1707 aaKnown RBP27.79■■■□□ 2.04
CCM2-216ENST00000488727 STAC3Q96MF2 364 aa27.78■■■□□ 2.04
CCM2-216ENST00000488727 DIP2AQ14689 1571 aa27.78■■■□□ 2.04
CCM2-216ENST00000488727 ALKQ9UM73 1620 aa27.77■■■□□ 2.04
CCM2-216ENST00000488727 PRAG1Q86YV5 1406 aa27.74■■■□□ 2.03
CCM2-216ENST00000488727 TBX22Q9Y458 520 aa27.73■■■□□ 2.03
CCM2-216ENST00000488727 LAMC1P11047 1609 aa27.72■■■□□ 2.03
CCM2-216ENST00000488727 METP08581 1390 aa27.7■■■□□ 2.03
CCM2-216ENST00000488727 STRCP1A6NGW2 1772 aa27.69■■■□□ 2.02
CCM2-216ENST00000488727 CFAP70Q5T0N1 1121 aa27.69■■■□□ 2.02
CCM2-216ENST00000488727 C14orf93Q9H972 538 aaKnown RBP27.69■■■□□ 2.02
CCM2-216ENST00000488727 ASXL1Q8IXJ9 1541 aa27.68■■■□□ 2.02
CCM2-216ENST00000488727 CHD2O14647 1828 aaKnown RBP27.68■■■□□ 2.02
CCM2-216ENST00000488727 TIMELESSQ9UNS1 1208 aa27.68■■■□□ 2.02
CCM2-216ENST00000488727 ZNF335Q9H4Z2 1342 aaPredicted RBP27.67■■■□□ 2.02
CCM2-216ENST00000488727 ZNF316A6NFI3 1004 aaPredicted RBP27.67■■■□□ 2.02
CCM2-216ENST00000488727 KIAA1210Q9ULL0 1709 aa27.65■■■□□ 2.02
CCM2-216ENST00000488727 PTPRUQ92729 1446 aa27.65■■■□□ 2.02
CCM2-216ENST00000488727 NBPF8Q3BBV2 869 aa27.64■■■□□ 2.02
CCM2-216ENST00000488727 PIK3R4Q99570 1358 aa27.64■■■□□ 2.02
CCM2-216ENST00000488727 TRPM1Q7Z4N2 1603 aa27.64■■■□□ 2.02
CCM2-216ENST00000488727 NWD1Q149M9 1564 aa27.64■■■□□ 2.01
CCM2-216ENST00000488727 ADGRB1O14514 1584 aa27.63■■■□□ 2.01
CCM2-216ENST00000488727 XRN1Q8IZH2 1706 aaKnown RBP27.62■■■□□ 2.01
CCM2-216ENST00000488727 TMEM132EQ6IEE7 984 aa27.61■■■□□ 2.01
CCM2-216ENST00000488727 LTBP4Q8N2S1 1624 aa27.6■■■□□ 2.01
CCM2-216ENST00000488727 DIEXFQ68CQ4 756 aaKnown RBP27.6■■■□□ 2.01
CCM2-216ENST00000488727 KCNA6P17658 529 aa27.59■■■□□ 2.01
CCM2-216ENST00000488727 NBPF1Q3BBV0 1214 aa27.57■■■□□ 2
CCM2-216ENST00000488727 AMOTL2Q9Y2J4 779 aa27.56■■■□□ 2
CCM2-216ENST00000488727 YTHDC2Q9H6S0 1430 aaKnown RBP27.54■■■□□ 2
CCM2-216ENST00000488727 NKTRP30414 1462 aaKnown RBP27.54■■■□□ 2
CCM2-216ENST00000488727 KNDC1Q76NI1 1749 aa27.53■■■□□ 2
CCM2-216ENST00000488727 LRPPRCP42704 1394 aaKnown RBP27.52■■■□□ 2
CCM2-216ENST00000488727 RALGAPBQ86X10 1494 aa27.52■■■□□ 2
CCM2-216ENST00000488727 CPS1P31327 1500 aa27.52■■■□□ 2
CCM2-216ENST00000488727 STK26Q9P289 416 aa27.5■■□□□ 1.99
CCM2-216ENST00000488727 TECPR2O15040 1411 aa27.5■■□□□ 1.99
CCM2-216ENST00000488727 LRRC7Q96NW7 1537 aa27.49■■□□□ 1.99
CCM2-216ENST00000488727 ROCK2O75116 1388 aaKnown RBP27.49■■□□□ 1.99
CCM2-216ENST00000488727 ABCC11Q96J66 1382 aa27.49■■□□□ 1.99
CCM2-216ENST00000488727 XIRP1Q702N8 1843 aaKnown RBP27.49■■□□□ 1.99
CCM2-216ENST00000488727 ROBO2Q9HCK4 1378 aa27.48■■□□□ 1.99
CCM2-216ENST00000488727 PTCH1Q13635 1447 aa27.48■■□□□ 1.99
CCM2-216ENST00000488727 GPRASP1Q5JY77 1395 aa27.47■■□□□ 1.99
CCM2-216ENST00000488727 RBM33Q96EV2 1170 aaKnown RBP27.45■■□□□ 1.99
CCM2-216ENST00000488727 ARHGEF28Q8N1W1 1705 aaKnown RBP27.45■■□□□ 1.98
CCM2-216ENST00000488727 DLC1Q96QB1 1528 aa27.44■■□□□ 1.98
CCM2-216ENST00000488727 PROSER2Q86WR7 435 aaPredicted RBP27.44■■□□□ 1.98
CCM2-216ENST00000488727 TRAK1Q9UPV9 953 aa27.44■■□□□ 1.98
CCM2-216ENST00000488727 TMEM94Q12767 1356 aa27.42■■□□□ 1.98
CCM2-216ENST00000488727 PLEKHH1Q9ULM0 1364 aa27.4■■□□□ 1.98
CCM2-216ENST00000488727 FAM135BQ49AJ0 1406 aa27.39■■□□□ 1.98
CCM2-216ENST00000488727 CARD11Q9BXL7 1154 aa27.39■■□□□ 1.98
CCM2-216ENST00000488727 WAPLQ7Z5K2 1190 aa27.38■■□□□ 1.97
CCM2-216ENST00000488727 NALCNQ8IZF0 1738 aa27.37■■□□□ 1.97
CCM2-216ENST00000488727 SIRT1Q96EB6 747 aa27.37■■□□□ 1.97
CCM2-216ENST00000488727 PRAM1Q96QH2 718 aa27.36■■□□□ 1.97
CCM2-216ENST00000488727 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.35■■□□□ 1.97
CCM2-216ENST00000488727 CERKQ8TCT0 537 aa27.35■■□□□ 1.97
CCM2-216ENST00000488727 NCOA3Q9Y6Q9 1424 aa27.34■■□□□ 1.97
CCM2-216ENST00000488727 SAFB2Q14151 953 aaKnown RBP eCLIP27.32■■□□□ 1.965e-8■■■□□ 18
CCM2-216ENST00000488727 IQSEC2Q5JU85 1478 aa27.31■■□□□ 1.96
CCM2-216ENST00000488727 ADGRL3Q9HAR2 1447 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 207.2 ms