RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 RRBP1Q9P2E9 1410 aaKnown RBP34.32■■■■□ 3.08
PTPN4-211ENST00000488279 ALKQ9UM73 1620 aa34.32■■■■□ 3.08
PTPN4-211ENST00000488279 RIMS2Q9UQ26 1411 aa34.3■■■■□ 3.08
PTPN4-211ENST00000488279 ZFYVE9O95405 1425 aa34.3■■■■□ 3.08
PTPN4-211ENST00000488279 E9PCH4 1651 aa34.29■■■■□ 3.08
PTPN4-211ENST00000488279 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.29■■■■□ 3.08
PTPN4-211ENST00000488279 SENP3Q9H4L4 574 aaPredicted RBP34.29■■■■□ 3.08
PTPN4-211ENST00000488279 PLEKHG1Q9ULL1 1385 aa34.27■■■■□ 3.08
PTPN4-211ENST00000488279 PROSER2Q86WR7 435 aaPredicted RBP34.27■■■■□ 3.08
PTPN4-211ENST00000488279 TMEM131LA2VDJ0 1609 aa34.26■■■■□ 3.08
PTPN4-211ENST00000488279 TMEM94Q12767 1356 aa34.25■■■■□ 3.07
PTPN4-211ENST00000488279 NUTM2DQ5VT03 806 aaPredicted RBP34.2■■■■□ 3.07
PTPN4-211ENST00000488279 TBX22Q9Y458 520 aa34.2■■■■□ 3.07
PTPN4-211ENST00000488279 RBM33Q96EV2 1170 aaKnown RBP34.19■■■■□ 3.06
PTPN4-211ENST00000488279 MYO5BQ9ULV0 1848 aa34.18■■■■□ 3.06
PTPN4-211ENST00000488279 NAIPQ13075 1403 aa34.15■■■■□ 3.06
PTPN4-211ENST00000488279 NKTRP30414 1462 aaKnown RBP34.14■■■■□ 3.06
PTPN4-211ENST00000488279 XIRP1Q702N8 1843 aaKnown RBP34.14■■■■□ 3.06
PTPN4-211ENST00000488279 SOCS7O14512 581 aa34.11■■■■□ 3.05
PTPN4-211ENST00000488279 NWD1Q149M9 1564 aa34.11■■■■□ 3.05
PTPN4-211ENST00000488279 FAM135BQ49AJ0 1406 aa34.09■■■■□ 3.05
PTPN4-211ENST00000488279 TRIM52Q96A61 297 aa34.07■■■■□ 3.04
PTPN4-211ENST00000488279 MSH6P52701 1360 aa34.07■■■■□ 3.04
PTPN4-211ENST00000488279 ZNF326Q5BKZ1 582 aaKnown RBP34.06■■■■□ 3.04
PTPN4-211ENST00000488279 ADAMTS13Q76LX8 1427 aa34.05■■■■□ 3.04
PTPN4-211ENST00000488279 MED1Q15648 1581 aaPredicted RBP34.04■■■■□ 3.04
PTPN4-211ENST00000488279 HFM1A2PYH4 1435 aa34.04■■■■□ 3.04
PTPN4-211ENST00000488279 PIK3R4Q99570 1358 aa34.02■■■■□ 3.04
PTPN4-211ENST00000488279 CHD2O14647 1828 aaKnown RBP34.01■■■■□ 3.03
PTPN4-211ENST00000488279 SPHKAPQ2M3C7 1700 aa34■■■■□ 3.03
PTPN4-211ENST00000488279 SLAIN2Q9P270 581 aa34■■■■□ 3.03
PTPN4-211ENST00000488279 PHF23Q9BUL5 403 aaPredicted RBP33.99■■■■□ 3.03
PTPN4-211ENST00000488279 DIP2AQ14689 1571 aa33.98■■■■□ 3.03
PTPN4-211ENST00000488279 C14orf37Q86TY3 774 aa33.98■■■■□ 3.03
PTPN4-211ENST00000488279 NCOA3Q9Y6Q9 1424 aa33.97■■■■□ 3.03
PTPN4-211ENST00000488279 SLC4A1APQ9BWU0 796 aaKnown RBP33.96■■■■□ 3.03
PTPN4-211ENST00000488279 AMOTL2Q9Y2J4 779 aa33.96■■■■□ 3.03
PTPN4-211ENST00000488279 TRPM2O94759 1503 aa33.92■■■■□ 3.02
PTPN4-211ENST00000488279 C19orf44Q9H6X5 657 aa33.91■■■■□ 3.02
PTPN4-211ENST00000488279 CADPS2Q86UW7 1296 aa33.88■■■■□ 3.01
PTPN4-211ENST00000488279 ROBO1Q9Y6N7 1651 aa33.87■■■■□ 3.01
PTPN4-211ENST00000488279 CLTCL1P53675 1640 aa33.87■■■■□ 3.01
PTPN4-211ENST00000488279 ATF3P18847 181 aa33.87■■■■□ 3.01
PTPN4-211ENST00000488279 PTPRUQ92729 1446 aa33.87■■■■□ 3.01
PTPN4-211ENST00000488279 SETBP1Q9Y6X0 1596 aa33.85■■■■□ 3.01
PTPN4-211ENST00000488279 VGFO15240 615 aaPredicted RBP33.82■■■■□ 3
PTPN4-211ENST00000488279 METP08581 1390 aa33.81■■■■□ 3
PTPN4-211ENST00000488279 NEXMIFQ5QGS0 1516 aa33.79■■■■□ 3
PTPN4-211ENST00000488279 NRXN3Q9Y4C0 1643 aa33.79■■■■□ 3
PTPN4-211ENST00000488279 RPGRIP1LQ68CZ1 1315 aa33.78■■■■□ 3
PTPN4-211ENST00000488279 KIF1BO60333 1816 aa33.76■■■■□ 3
PTPN4-211ENST00000488279 FOXD1Q16676 465 aa33.76■■■□□ 2.99
PTPN4-211ENST00000488279 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.73■■■□□ 2.99
PTPN4-211ENST00000488279 MPHOSPH9Q99550 1183 aa33.72■■■□□ 2.99
PTPN4-211ENST00000488279 RGS17Q9UGC6 210 aaPredicted RBP33.7■■■□□ 2.99
PTPN4-211ENST00000488279 XRN1Q8IZH2 1706 aaKnown RBP33.69■■■□□ 2.98
PTPN4-211ENST00000488279 JCADQ9P266 1359 aa33.69■■■□□ 2.98
PTPN4-211ENST00000488279 ACIN1Q9UKV3 1341 aaKnown RBP33.67■■■□□ 2.98
PTPN4-211ENST00000488279 DCCP43146 1447 aa33.67■■■□□ 2.98
PTPN4-211ENST00000488279 PHLPP1O60346 1717 aa33.67■■■□□ 2.98
PTPN4-211ENST00000488279 BRINP3Q76B58 766 aa33.64■■■□□ 2.98
PTPN4-211ENST00000488279 CCDC144AA2RUR9 1427 aa33.63■■■□□ 2.97
PTPN4-211ENST00000488279 RGL3Q3MIN7 710 aa33.6■■■□□ 2.97
PTPN4-211ENST00000488279 SETD5Q9C0A6 1442 aa33.58■■■□□ 2.97
PTPN4-211ENST00000488279 ADGRL3Q9HAR2 1447 aa33.57■■■□□ 2.96
PTPN4-211ENST00000488279 COL16A1Q07092 1604 aaPredicted RBP33.57■■■□□ 2.96
PTPN4-211ENST00000488279 MST1RQ04912 1400 aa33.55■■■□□ 2.96
PTPN4-211ENST00000488279 AHDC1Q5TGY3 1603 aaPredicted RBP33.55■■■□□ 2.96
PTPN4-211ENST00000488279 SPATA31A6Q5VVP1 1343 aa33.54■■■□□ 2.96
PTPN4-211ENST00000488279 PTCH1Q13635 1447 aa33.53■■■□□ 2.96
PTPN4-211ENST00000488279 ROBO2Q9HCK4 1378 aa33.52■■■□□ 2.96
PTPN4-211ENST00000488279 POTEAQ6S8J7 498 aa33.52■■■□□ 2.96
PTPN4-211ENST00000488279 SPATA31E1Q6ZUB1 1445 aa33.52■■■□□ 2.96
PTPN4-211ENST00000488279 ADGRF5Q8IZF2 1346 aa33.52■■■□□ 2.96
PTPN4-211ENST00000488279 ANKRD30BQ9BXX2 1392 aa33.5■■■□□ 2.95
PTPN4-211ENST00000488279 PPLO60437 1756 aa33.5■■■□□ 2.95
PTPN4-211ENST00000488279 ASXL1Q8IXJ9 1541 aa33.48■■■□□ 2.95
PTPN4-211ENST00000488279 SETD1AO15047 1707 aaKnown RBP33.47■■■□□ 2.95
PTPN4-211ENST00000488279 PRAG1Q86YV5 1406 aa33.46■■■□□ 2.95
PTPN4-211ENST00000488279 MEX3CQ5U5Q3 659 aaKnown RBP33.46■■■□□ 2.95
PTPN4-211ENST00000488279 LRRC59Q96AG4 307 aaKnown RBP33.45■■■□□ 2.95
PTPN4-211ENST00000488279 RAB3GAP2Q9H2M9 1393 aa33.43■■■□□ 2.94
PTPN4-211ENST00000488279 NALCNQ8IZF0 1738 aa33.42■■■□□ 2.94
PTPN4-211ENST00000488279 C1orf167Q5SNV9 1468 aa33.41■■■□□ 2.94
PTPN4-211ENST00000488279 DDX17Q92841 729 aaKnown RBP33.4■■■□□ 2.94
PTPN4-211ENST00000488279 STK26Q9P289 416 aa33.4■■■□□ 2.94
PTPN4-211ENST00000488279 LRP6O75581 1613 aa33.39■■■□□ 2.93
PTPN4-211ENST00000488279 NUTM2BA6NNL0 878 aaPredicted RBP33.38■■■□□ 2.93
PTPN4-211ENST00000488279 NUTM2EB1AL46 878 aaPredicted RBP33.38■■■□□ 2.93
PTPN4-211ENST00000488279 NUTM2AQ8IVF1 878 aaPredicted RBP33.38■■■□□ 2.93
PTPN4-211ENST00000488279 SHPRHQ149N8 1683 aa33.37■■■□□ 2.93
PTPN4-211ENST00000488279 TMEM132EQ6IEE7 984 aa33.36■■■□□ 2.93
PTPN4-211ENST00000488279 ORAI2Q96SN7 254 aa33.36■■■□□ 2.93
PTPN4-211ENST00000488279 ZNF772Q68DY9 489 aaPredicted RBP33.35■■■□□ 2.93
PTPN4-211ENST00000488279 LRPPRCP42704 1394 aaKnown RBP33.34■■■□□ 2.93
PTPN4-211ENST00000488279 NHSL1Q5SYE7 1610 aa33.33■■■□□ 2.93
PTPN4-211ENST00000488279 PIK3C2GO75747 1445 aa33.33■■■□□ 2.93
PTPN4-211ENST00000488279 WAPLQ7Z5K2 1190 aa33.32■■■□□ 2.92
PTPN4-211ENST00000488279 ABCC11Q96J66 1382 aa33.32■■■□□ 2.92
PTPN4-211ENST00000488279 C14orf93Q9H972 538 aaKnown RBP33.3■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms