RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.81□□□□□ -0.84
PTPRE-209ENST00000487428 CLSPNQ9HAW4 1339 aa9.81□□□□□ -0.84
PTPRE-209ENST00000487428 PLEKHG1Q9ULL1 1385 aa9.8□□□□□ -0.84
PTPRE-209ENST00000487428 CHD2O14647 1828 aaKnown RBP9.79□□□□□ -0.84
PTPRE-209ENST00000487428 DHX57Q6P158 1386 aaKnown RBP9.79□□□□□ -0.84
PTPRE-209ENST00000487428 HSPA2P54652 639 aa9.79□□□□□ -0.84
PTPRE-209ENST00000487428 NPHP4O75161 1426 aaPredicted RBP9.79□□□□□ -0.84
PTPRE-209ENST00000487428 RIMS2Q9UQ26 1411 aa9.79□□□□□ -0.84
PTPRE-209ENST00000487428 SETD1AO15047 1707 aaKnown RBP9.79□□□□□ -0.84
PTPRE-209ENST00000487428 MYOM2P54296 1465 aa9.79□□□□□ -0.84
PTPRE-209ENST00000487428 NRXN1Q9ULB1 1477 aa9.79□□□□□ -0.84
PTPRE-209ENST00000487428 LAMC1P11047 1609 aa9.78□□□□□ -0.84
PTPRE-209ENST00000487428 NRXN3Q9Y4C0 1643 aa9.78□□□□□ -0.84
PTPRE-209ENST00000487428 PIK3R4Q99570 1358 aa9.78□□□□□ -0.84
PTPRE-209ENST00000487428 PLPPR3Q6T4P5 718 aa9.78□□□□□ -0.84
PTPRE-209ENST00000487428 EID1Q9Y6B2 187 aa9.78□□□□□ -0.84
PTPRE-209ENST00000487428 PRAG1Q86YV5 1406 aa9.78□□□□□ -0.84
PTPRE-209ENST00000487428 NWD1Q149M9 1564 aa9.77□□□□□ -0.85
PTPRE-209ENST00000487428 LTKP29376 864 aa9.77□□□□□ -0.85
PTPRE-209ENST00000487428 STAG3Q9UJ98 1225 aa9.77□□□□□ -0.85
PTPRE-209ENST00000487428 IQSEC2Q5JU85 1478 aa9.77□□□□□ -0.85
PTPRE-209ENST00000487428 KIAA1210Q9ULL0 1709 aa9.76□□□□□ -0.85
PTPRE-209ENST00000487428 TXNDC2Q86VQ3 553 aa9.76□□□□□ -0.85
PTPRE-209ENST00000487428 LTBP4Q8N2S1 1624 aa9.75□□□□□ -0.85
PTPRE-209ENST00000487428 VGFO15240 615 aaPredicted RBP9.75□□□□□ -0.85
PTPRE-209ENST00000487428 CPS1P31327 1500 aa9.75□□□□□ -0.85
PTPRE-209ENST00000487428 ADAMTS13Q76LX8 1427 aa9.74□□□□□ -0.85
PTPRE-209ENST00000487428 STRCP1A6NGW2 1772 aa9.74□□□□□ -0.85
PTPRE-209ENST00000487428 FOXD1Q16676 465 aa9.74□□□□□ -0.85
PTPRE-209ENST00000487428 TBX22Q9Y458 520 aa9.74□□□□□ -0.85
PTPRE-209ENST00000487428 PIK3C2GO75747 1445 aa9.73□□□□□ -0.85
PTPRE-209ENST00000487428 NKTRP30414 1462 aaKnown RBP9.73□□□□□ -0.85
PTPRE-209ENST00000487428 NCKAP5LQ9HCH0 1330 aa9.73□□□□□ -0.85
PTPRE-209ENST00000487428 KNDC1Q76NI1 1749 aa9.73□□□□□ -0.85
PTPRE-209ENST00000487428 XRN1Q8IZH2 1706 aaKnown RBP9.73□□□□□ -0.85
PTPRE-209ENST00000487428 NCOA3Q9Y6Q9 1424 aa9.72□□□□□ -0.85
PTPRE-209ENST00000487428 ALKQ9UM73 1620 aa9.71□□□□□ -0.85
PTPRE-209ENST00000487428 XIRP1Q702N8 1843 aaKnown RBP9.71□□□□□ -0.85
PTPRE-209ENST00000487428 PCGF6Q9BYE7 350 aa9.71□□□□□ -0.86
PTPRE-209ENST00000487428 TIMELESSQ9UNS1 1208 aa9.71□□□□□ -0.86
PTPRE-209ENST00000487428 TECPR2O15040 1411 aa9.69□□□□□ -0.86
PTPRE-209ENST00000487428 CHGAP10645 457 aaKnown RBP9.69□□□□□ -0.86
PTPRE-209ENST00000487428 PPP1R15AO75807 674 aaPredicted RBP9.68□□□□□ -0.86
PTPRE-209ENST00000487428 KCNA6P17658 529 aa9.68□□□□□ -0.86
PTPRE-209ENST00000487428 ZNF326Q5BKZ1 582 aaKnown RBP9.68□□□□□ -0.86
PTPRE-209ENST00000487428 PTCH1Q13635 1447 aa9.67□□□□□ -0.86
PTPRE-209ENST00000487428 C14orf93Q9H972 538 aaKnown RBP9.67□□□□□ -0.86
PTPRE-209ENST00000487428 ADGRB1O14514 1584 aa9.67□□□□□ -0.86
PTPRE-209ENST00000487428 ADGRF5Q8IZF2 1346 aa9.66□□□□□ -0.86
PTPRE-209ENST00000487428 SIRT1Q96EB6 747 aa9.66□□□□□ -0.86
PTPRE-209ENST00000487428 TRPM1Q7Z4N2 1603 aa9.66□□□□□ -0.86
PTPRE-209ENST00000487428 ASXL1Q8IXJ9 1541 aa9.66□□□□□ -0.86
PTPRE-209ENST00000487428 LRRC7Q96NW7 1537 aa9.66□□□□□ -0.86
PTPRE-209ENST00000487428 DLC1Q96QB1 1528 aa9.66□□□□□ -0.86
PTPRE-209ENST00000487428 ABCC11Q96J66 1382 aa9.65□□□□□ -0.86
PTPRE-209ENST00000487428 ZNF335Q9H4Z2 1342 aaPredicted RBP9.64□□□□□ -0.87
PTPRE-209ENST00000487428 RGL3Q3MIN7 710 aa9.64□□□□□ -0.87
PTPRE-209ENST00000487428 DCCP43146 1447 aa9.64□□□□□ -0.87
PTPRE-209ENST00000487428 FAM135BQ49AJ0 1406 aa9.64□□□□□ -0.87
PTPRE-209ENST00000487428 PTPRUQ92729 1446 aa9.64□□□□□ -0.87
PTPRE-209ENST00000487428 METP08581 1390 aa9.63□□□□□ -0.87
PTPRE-209ENST00000487428 LRPPRCP42704 1394 aaKnown RBP9.63□□□□□ -0.87
PTPRE-209ENST00000487428 DCAF11Q8TEB1 546 aa9.62□□□□□ -0.87
PTPRE-209ENST00000487428 L3MBTL2Q969R5 705 aa9.62□□□□□ -0.87
PTPRE-209ENST00000487428 SLC26A8Q96RN1 970 aa9.62□□□□□ -0.87
PTPRE-209ENST00000487428 ARHGEF28Q8N1W1 1705 aaKnown RBP9.62□□□□□ -0.87
PTPRE-209ENST00000487428 GPRASP1Q5JY77 1395 aa9.62□□□□□ -0.87
PTPRE-209ENST00000487428 CERKQ8TCT0 537 aa9.61□□□□□ -0.87
PTPRE-209ENST00000487428 SIN3AQ96ST3 1273 aa9.61□□□□□ -0.87
PTPRE-209ENST00000487428 YTHDC2Q9H6S0 1430 aaKnown RBP9.61□□□□□ -0.87
PTPRE-209ENST00000487428 NALCNQ8IZF0 1738 aa9.6□□□□□ -0.87
PTPRE-209ENST00000487428 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.6□□□□□ -0.87
PTPRE-209ENST00000487428 ADGRB2O60241 1585 aa9.6□□□□□ -0.87
PTPRE-209ENST00000487428 NUTM2DQ5VT03 806 aaPredicted RBP9.6□□□□□ -0.87
PTPRE-209ENST00000487428 AMOTL2Q9Y2J4 779 aa9.6□□□□□ -0.87
PTPRE-209ENST00000487428 TONSLQ96HA7 1378 aa9.6□□□□□ -0.87
PTPRE-209ENST00000487428 RALGAPBQ86X10 1494 aa9.59□□□□□ -0.87
PTPRE-209ENST00000487428 CDC42BPGQ6DT37 1551 aa9.59□□□□□ -0.87
PTPRE-209ENST00000487428 ADGRL3Q9HAR2 1447 aa9.58□□□□□ -0.88
PTPRE-209ENST00000487428 BCANQ96GW7 911 aa9.58□□□□□ -0.88
PTPRE-209ENST00000487428 TMEM94Q12767 1356 aa9.58□□□□□ -0.88
PTPRE-209ENST00000487428 CFAP70Q5T0N1 1121 aa9.57□□□□□ -0.88
PTPRE-209ENST00000487428 ROBO2Q9HCK4 1378 aa9.57□□□□□ -0.88
PTPRE-209ENST00000487428 C19orf44Q9H6X5 657 aa9.56□□□□□ -0.88
PTPRE-209ENST00000487428 FMN2Q9NZ56 1722 aa9.56□□□□□ -0.88
PTPRE-209ENST00000487428 MSH6P52701 1360 aa9.55□□□□□ -0.88
PTPRE-209ENST00000487428 SBNO2Q9Y2G9 1366 aa9.55□□□□□ -0.88
PTPRE-209ENST00000487428 NEUROD1Q13562 356 aa9.55□□□□□ -0.88
PTPRE-209ENST00000487428 PROSER2Q86WR7 435 aaPredicted RBP9.55□□□□□ -0.88
PTPRE-209ENST00000487428 CCER1Q8TC90 406 aaPredicted RBP9.55□□□□□ -0.88
PTPRE-209ENST00000487428 KDM2AQ9Y2K7 1162 aa9.55□□□□□ -0.88
PTPRE-209ENST00000487428 FBXO41Q8TF61 875 aa9.54□□□□□ -0.88
PTPRE-209ENST00000487428 QRICH2Q9H0J4 1663 aa9.53□□□□□ -0.88
PTPRE-209ENST00000487428 TOM1O60784 492 aa9.53□□□□□ -0.88
PTPRE-209ENST00000487428 CADPS2Q86UW7 1296 aa9.53□□□□□ -0.88
PTPRE-209ENST00000487428 ITSN1Q15811 1721 aa9.53□□□□□ -0.88
PTPRE-209ENST00000487428 SLC24A1O60721 1099 aa9.52□□□□□ -0.89
PTPRE-209ENST00000487428 NBPF8Q3BBV2 869 aa9.52□□□□□ -0.89
PTPRE-209ENST00000487428 TMEM132EQ6IEE7 984 aa9.52□□□□□ -0.89
PTPRE-209ENST00000487428 ROCK2O75116 1388 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms