RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 KIF1BO60333 1816 aa35.07■■■■□ 3.2
HLA-C-208ENST00000487245 EIF3AQ14152 1382 aaKnown RBP35.06■■■■□ 3.2
HLA-C-208ENST00000487245 SLC24A1O60721 1099 aa35.05■■■■□ 3.2
HLA-C-208ENST00000487245 B4GALNT3Q6L9W6 998 aa35.03■■■■□ 3.2
HLA-C-208ENST00000487245 PPRC1Q5VV67 1664 aaKnown RBP35.03■■■■□ 3.2
HLA-C-208ENST00000487245 MAP3K4Q9Y6R4 1608 aa35.01■■■■□ 3.2
HLA-C-208ENST00000487245 HECW2Q9P2P5 1572 aa35.01■■■■□ 3.2
HLA-C-208ENST00000487245 NEO1Q92859 1461 aa35■■■■□ 3.19
HLA-C-208ENST00000487245 IFT172Q9UG01 1749 aa34.95■■■■□ 3.19
HLA-C-208ENST00000487245 SYNMO15061 1565 aa34.95■■■■□ 3.19
HLA-C-208ENST00000487245 FRMPD1Q5SYB0 1578 aa34.93■■■■□ 3.18
HLA-C-208ENST00000487245 PDE3BQ13370 1112 aa34.93■■■■□ 3.18
HLA-C-208ENST00000487245 UGGT1Q9NYU2 1555 aa34.92■■■■□ 3.18
HLA-C-208ENST00000487245 CC2D1BQ5T0F9 858 aaKnown RBP34.92■■■■□ 3.18
HLA-C-208ENST00000487245 NRXN1Q9ULB1 1477 aa34.9■■■■□ 3.18
HLA-C-208ENST00000487245 ABCA6Q8N139 1617 aa34.9■■■■□ 3.18
HLA-C-208ENST00000487245 BLMP54132 1417 aaPredicted RBP34.89■■■■□ 3.18
HLA-C-208ENST00000487245 MSH5O43196 834 aa34.88■■■■□ 3.17
HLA-C-208ENST00000487245 KNSTRNQ9Y448 316 aa34.88■■■■□ 3.17
HLA-C-208ENST00000487245 ADGRB3O60242 1522 aa34.88■■■■□ 3.17
HLA-C-208ENST00000487245 MROH2AA6NES4 1674 aa34.86■■■■□ 3.17
HLA-C-208ENST00000487245 ADGRF5Q8IZF2 1346 aa34.84■■■■□ 3.17
HLA-C-208ENST00000487245 CFAP70Q5T0N1 1121 aa34.84■■■■□ 3.17
HLA-C-208ENST00000487245 NPATQ14207 1427 aa34.83■■■■□ 3.17
HLA-C-208ENST00000487245 KDM5AP29375 1690 aaKnown RBP34.82■■■■□ 3.17
HLA-C-208ENST00000487245 NPC1L1Q9UHC9 1359 aa34.82■■■■□ 3.16
HLA-C-208ENST00000487245 GGT6Q6P531 493 aa34.8■■■■□ 3.16
HLA-C-208ENST00000487245 SETBP1Q9Y6X0 1596 aa34.8■■■■□ 3.16
HLA-C-208ENST00000487245 ABCC3O15438 1527 aa34.8■■■■□ 3.16
HLA-C-208ENST00000487245 RPGRIP1LQ68CZ1 1315 aa34.8■■■■□ 3.16
HLA-C-208ENST00000487245 CCDC136Q96JN2 1154 aa34.79■■■■□ 3.16
HLA-C-208ENST00000487245 ASXL1Q8IXJ9 1541 aa34.78■■■■□ 3.16
HLA-C-208ENST00000487245 AMER1Q5JTC6 1135 aaPredicted RBP34.77■■■■□ 3.16
HLA-C-208ENST00000487245 RIMBP3CA6NJZ7 1639 aa34.77■■■■□ 3.16
HLA-C-208ENST00000487245 RIMBP3BA6NNM3 1639 aa34.77■■■■□ 3.16
HLA-C-208ENST00000487245 MYO3AQ8NEV4 1616 aa34.77■■■■□ 3.16
HLA-C-208ENST00000487245 RIMBP3Q9UFD9 1639 aa34.77■■■■□ 3.16
HLA-C-208ENST00000487245 MYOM1P52179 1685 aa34.76■■■■□ 3.16
HLA-C-208ENST00000487245 RRP1P56182 461 aaKnown RBP34.76■■■■□ 3.16
HLA-C-208ENST00000487245 SBNO2Q9Y2G9 1366 aa34.76■■■■□ 3.15
HLA-C-208ENST00000487245 NOS1P29475 1434 aa34.75■■■■□ 3.15
HLA-C-208ENST00000487245 PPLO60437 1756 aa34.73■■■■□ 3.15
HLA-C-208ENST00000487245 CAMSAP1Q5T5Y3 1602 aa34.72■■■■□ 3.15
HLA-C-208ENST00000487245 DIP2CQ9Y2E4 1556 aa34.72■■■■□ 3.15
HLA-C-208ENST00000487245 RCAN3Q9UKA8 241 aa34.71■■■■□ 3.15
HLA-C-208ENST00000487245 ERVK-7P63135 1459 aa34.71■■■■□ 3.15
HLA-C-208ENST00000487245 PPP2R1AP30153 589 aa34.71■■■■□ 3.15
HLA-C-208ENST00000487245 CHGAP10645 457 aaKnown RBP34.7■■■■□ 3.15
HLA-C-208ENST00000487245 RAPGEF3O95398 923 aa34.69■■■■□ 3.14
HLA-C-208ENST00000487245 RICTORQ6R327 1708 aa34.69■■■■□ 3.14
HLA-C-208ENST00000487245 GLI2P10070 1586 aa34.68■■■■□ 3.14
HLA-C-208ENST00000487245 PIK3C2GO75747 1445 aa34.67■■■■□ 3.14
HLA-C-208ENST00000487245 C14orf93Q9H972 538 aaKnown RBP34.67■■■■□ 3.14
HLA-C-208ENST00000487245 ARHGAP31Q2M1Z3 1444 aa34.66■■■■□ 3.14
HLA-C-208ENST00000487245 ZC3H13Q5T200 1668 aaKnown RBP34.65■■■■□ 3.14
HLA-C-208ENST00000487245 SENP3-EIF4A1A0A087X0R7 540 aa34.65■■■■□ 3.14
HLA-C-208ENST00000487245 CFAP65Q6ZU64 1925 aaKnown RBP34.64■■■■□ 3.14
HLA-C-208ENST00000487245 CENPJQ9HC77 1338 aaPredicted RBP34.63■■■■□ 3.13
HLA-C-208ENST00000487245 CYB5RLQ6IPT4 315 aa34.63■■■■□ 3.13
HLA-C-208ENST00000487245 PIK3C2BO00750 1634 aa34.62■■■■□ 3.13
HLA-C-208ENST00000487245 WDR43Q15061 677 aaKnown RBP eCLIP34.59■■■■□ 3.13
HLA-C-208ENST00000487245 SALL2Q9Y467 1007 aaPredicted RBP34.57■■■■□ 3.12
HLA-C-208ENST00000487245 ADGRB1O14514 1584 aa34.56■■■■□ 3.12
HLA-C-208ENST00000487245 SIGLEC1Q9BZZ2 1709 aa34.56■■■■□ 3.12
HLA-C-208ENST00000487245 ADAMTS8Q9UP79 889 aa34.56■■■■□ 3.12
HLA-C-208ENST00000487245 VGFO15240 615 aaPredicted RBP34.54■■■■□ 3.12
HLA-C-208ENST00000487245 ERICH6Q7L0X2 663 aa34.53■■■■□ 3.12
HLA-C-208ENST00000487245 EXOC6Q8TAG9 804 aa34.52■■■■□ 3.12
HLA-C-208ENST00000487245 CDCA7LQ96GN5 454 aa34.52■■■■□ 3.12
HLA-C-208ENST00000487245 SLC52A1Q9NWF4 448 aa34.5■■■■□ 3.11
HLA-C-208ENST00000487245 QRICH2Q9H0J4 1663 aa34.49■■■■□ 3.11
HLA-C-208ENST00000487245 PUS7Q96PZ0 661 aaKnown RBP34.48■■■■□ 3.11
HLA-C-208ENST00000487245 TRAK1Q9UPV9 953 aa34.48■■■■□ 3.11
HLA-C-208ENST00000487245 NEXMIFQ5QGS0 1516 aa34.48■■■■□ 3.11
HLA-C-208ENST00000487245 YEATS2Q9ULM3 1422 aa34.47■■■■□ 3.11
HLA-C-208ENST00000487245 ZFYVE9O95405 1425 aa34.46■■■■□ 3.11
HLA-C-208ENST00000487245 CARD14Q9BXL6 1004 aa34.46■■■■□ 3.11
HLA-C-208ENST00000487245 TCERG1O14776 1098 aaKnown RBP34.4■■■■□ 3.1
HLA-C-208ENST00000487245 ZNF521Q96K83 1311 aa34.4■■■■□ 3.1
HLA-C-208ENST00000487245 IDI1Q13907 227 aa34.39■■■■□ 3.1
HLA-C-208ENST00000487245 TMEM132EQ6IEE7 984 aa34.39■■■■□ 3.1
HLA-C-208ENST00000487245 NGEFQ8N5V2 710 aa34.37■■■■□ 3.09
HLA-C-208ENST00000487245 PREX1Q8TCU6 1659 aa34.36■■■■□ 3.09
HLA-C-208ENST00000487245 PLEKHH1Q9ULM0 1364 aa34.35■■■■□ 3.09
HLA-C-208ENST00000487245 DIP2BQ9P265 1576 aa34.35■■■■□ 3.09
HLA-C-208ENST00000487245 FAM69CQ0P6D2 419 aa34.34■■■■□ 3.09
HLA-C-208ENST00000487245 EVC2Q86UK5 1308 aa34.33■■■■□ 3.09
HLA-C-208ENST00000487245 ARHGEF28Q8N1W1 1705 aaKnown RBP34.33■■■■□ 3.09
HLA-C-208ENST00000487245 USP32Q8NFA0 1604 aa34.33■■■■□ 3.09
HLA-C-208ENST00000487245 POLR3AO14802 1390 aaPredicted RBP34.33■■■■□ 3.09
HLA-C-208ENST00000487245 MS4A1P11836 297 aa34.33■■■■□ 3.09
HLA-C-208ENST00000487245 PPP6R1Q9UPN7 881 aa34.33■■■■□ 3.09
HLA-C-208ENST00000487245 NOP58Q9Y2X3 529 aaKnown RBP34.33■■■■□ 3.09
HLA-C-208ENST00000487245 REREQ9P2R6 1566 aa34.32■■■■□ 3.08
HLA-C-208ENST00000487245 NSD3Q9BZ95 1437 aa34.31■■■■□ 3.08
HLA-C-208ENST00000487245 GOLGA2Q08379 1002 aa34.31■■■■□ 3.08
HLA-C-208ENST00000487245 ANP32AP39687 249 aaKnown RBP34.31■■■■□ 3.08
HLA-C-208ENST00000487245 TMEM131LA2VDJ0 1609 aa34.3■■■■□ 3.08
HLA-C-208ENST00000487245 DUSP27Q5VZP5 1158 aa34.29■■■■□ 3.08
HLA-C-208ENST00000487245 SLC12A5Q9H2X9 1139 aa34.27■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms