RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 AK7Q96M32 723 aa7.93□□□□□ -1.14
PTCD3-216ENST00000487043 LAPTM4AQ15012 233 aa7.92□□□□□ -1.14
PTCD3-216ENST00000487043 RBM27Q9P2N5 1060 aaKnown RBP7.92□□□□□ -1.14
PTCD3-216ENST00000487043 GFRA3O60609 400 aa7.91□□□□□ -1.14
PTCD3-216ENST00000487043 PRKD2Q9BZL6 878 aa7.91□□□□□ -1.14
PTCD3-216ENST00000487043 SLC4A3P48751 1232 aa7.9□□□□□ -1.14
PTCD3-216ENST00000487043 PPP1R18Q6NYC8 613 aa7.9□□□□□ -1.14
PTCD3-216ENST00000487043 PADI6Q6TGC4 694 aa7.9□□□□□ -1.14
PTCD3-216ENST00000487043 ZNF516Q92618 1163 aa7.9□□□□□ -1.14
PTCD3-216ENST00000487043 NECTIN2Q92692 538 aa7.9□□□□□ -1.14
PTCD3-216ENST00000487043 NPDC1Q9NQX5 325 aaPredicted RBP7.9□□□□□ -1.14
PTCD3-216ENST00000487043 APLP1P51693 650 aa7.89□□□□□ -1.15
PTCD3-216ENST00000487043 SWT1Q5T5J6 900 aaKnown RBP7.89□□□□□ -1.15
PTCD3-216ENST00000487043 GPBP1L1Q9HC44 474 aaPredicted RBP7.89□□□□□ -1.15
PTCD3-216ENST00000487043 SLF2Q8IX21 1173 aa7.88□□□□□ -1.15
PTCD3-216ENST00000487043 COPS2P61201 443 aa7.87□□□□□ -1.15
PTCD3-216ENST00000487043 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.87□□□□□ -1.15
PTCD3-216ENST00000487043 TTC13Q8NBP0 860 aa7.86□□□□□ -1.15
PTCD3-216ENST00000487043 GGCXP38435 758 aa7.85□□□□□ -1.15
PTCD3-216ENST00000487043 IL27Q8NEV9 243 aa7.85□□□□□ -1.15
PTCD3-216ENST00000487043 NKX2-3Q8TAU0 364 aa7.85□□□□□ -1.15
PTCD3-216ENST00000487043 TRIM66O15016 1216 aa7.84□□□□□ -1.15
PTCD3-216ENST00000487043 V9GY48 417 aaPredicted RBP7.84□□□□□ -1.15
PTCD3-216ENST00000487043 PDE4DQ08499 809 aa7.83□□□□□ -1.16
PTCD3-216ENST00000487043 TRAF7Q6Q0C0 670 aa7.83□□□□□ -1.16
PTCD3-216ENST00000487043 KDM4CQ9H3R0 1056 aa7.83□□□□□ -1.16
PTCD3-216ENST00000487043 NUTM2FA1L443 756 aa7.82□□□□□ -1.16
PTCD3-216ENST00000487043 NRG2O14511 850 aaPredicted RBP7.82□□□□□ -1.16
PTCD3-216ENST00000487043 EYA1Q99502 592 aa7.82□□□□□ -1.16
PTCD3-216ENST00000487043 GPR37O15354 613 aa7.81□□□□□ -1.16
PTCD3-216ENST00000487043 ARXQ96QS3 562 aa7.81□□□□□ -1.16
PTCD3-216ENST00000487043 PRR14Q9BWN1 585 aa7.81□□□□□ -1.16
PTCD3-216ENST00000487043 PCDHB3Q9Y5E6 796 aa7.81□□□□□ -1.16
PTCD3-216ENST00000487043 ZPR1O75312 459 aa7.8□□□□□ -1.16
PTCD3-216ENST00000487043 PTGDRQ13258 359 aa7.8□□□□□ -1.16
PTCD3-216ENST00000487043 DAXXQ9UER7 740 aaPredicted RBP7.8□□□□□ -1.16
PTCD3-216ENST00000487043 SUPT5HO00267 1087 aaKnown RBP7.79□□□□□ -1.16
PTCD3-216ENST00000487043 RBM46Q8TBY0 533 aaKnown RBP7.79□□□□□ -1.16
PTCD3-216ENST00000487043 PDZRN3Q9UPQ7 1066 aa7.79□□□□□ -1.16
PTCD3-216ENST00000487043 DNAJB2P25686 324 aa7.78□□□□□ -1.16
PTCD3-216ENST00000487043 MINK1Q8N4C8 1332 aaPredicted RBP7.78□□□□□ -1.16
PTCD3-216ENST00000487043 LCE2BO14633 110 aa7.77□□□□□ -1.17
PTCD3-216ENST00000487043 TMUB1Q9BVT8 246 aa7.77□□□□□ -1.17
PTCD3-216ENST00000487043 BLOC1S3Q6QNY0 202 aa7.76□□□□□ -1.17
PTCD3-216ENST00000487043 CCDC102AQ96A19 550 aa7.76□□□□□ -1.17
PTCD3-216ENST00000487043 MAP2K5Q13163 448 aa7.75□□□□□ -1.17
PTCD3-216ENST00000487043 KMT5BQ4FZB7 885 aa7.75□□□□□ -1.17
PTCD3-216ENST00000487043 IRF6O14896 467 aa7.74□□□□□ -1.17
PTCD3-216ENST00000487043 GNPATO15228 680 aa7.74□□□□□ -1.17
PTCD3-216ENST00000487043 FCHSD2O94868 740 aa7.74□□□□□ -1.17
PTCD3-216ENST00000487043 FAM161AQ3B820 660 aa7.74□□□□□ -1.17
PTCD3-216ENST00000487043 FAM117AQ9C073 453 aa7.74□□□□□ -1.17
PTCD3-216ENST00000487043 TMEM134Q9H6X4 195 aa7.74□□□□□ -1.17
PTCD3-216ENST00000487043 ADGRG1Q9Y653 693 aa7.74□□□□□ -1.17
PTCD3-216ENST00000487043 RCCD1A6NED2 376 aa7.73□□□□□ -1.17
PTCD3-216ENST00000487043 TLL1O43897 1013 aa7.73□□□□□ -1.17
PTCD3-216ENST00000487043 RNF223E7ERA6 249 aa7.72□□□□□ -1.17
PTCD3-216ENST00000487043 CFHP08603 1231 aa7.72□□□□□ -1.17
PTCD3-216ENST00000487043 FECHP22830 423 aa7.72□□□□□ -1.17
PTCD3-216ENST00000487043 SLC19A1P41440 591 aa7.72□□□□□ -1.17
PTCD3-216ENST00000487043 HIC1Q14526 733 aa7.72□□□□□ -1.17
PTCD3-216ENST00000487043 HOMEZQ8IX15 550 aa7.72□□□□□ -1.17
PTCD3-216ENST00000487043 ZNF787Q6DD87 383 aa7.71□□□□□ -1.18
PTCD3-216ENST00000487043 ACTN4O43707 911 aaKnown RBP7.7□□□□□ -1.18
PTCD3-216ENST00000487043 PPEF1O14829 653 aaPredicted RBP7.69□□□□□ -1.18
PTCD3-216ENST00000487043 S1PR4O95977 384 aa7.69□□□□□ -1.18
PTCD3-216ENST00000487043 AMHR2Q16671 573 aa7.69□□□□□ -1.18
PTCD3-216ENST00000487043 PARP9Q8IXQ6 854 aa7.69□□□□□ -1.18
PTCD3-216ENST00000487043 DDRGK1Q96HY6 314 aa7.69□□□□□ -1.18
PTCD3-216ENST00000487043 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.68□□□□□ -1.18
PTCD3-216ENST00000487043 PLEKHG3A1L390 1219 aa7.68□□□□□ -1.18
PTCD3-216ENST00000487043 NR1I2O75469 434 aa7.68□□□□□ -1.18
PTCD3-216ENST00000487043 ANKLE1Q8NAG6 615 aa7.68□□□□□ -1.18
PTCD3-216ENST00000487043 SLC10A3P09131 477 aa7.67□□□□□ -1.18
PTCD3-216ENST00000487043 TTLL12Q14166 644 aaPredicted RBP7.67□□□□□ -1.18
PTCD3-216ENST00000487043 PKDCCQ504Y2 493 aa7.67□□□□□ -1.18
PTCD3-216ENST00000487043 SPRYD7Q5W111 196 aa7.67□□□□□ -1.18
PTCD3-216ENST00000487043 OATP04181 439 aa7.66□□□□□ -1.18
PTCD3-216ENST00000487043 RSPH4AQ5TD94 716 aa7.66□□□□□ -1.18
PTCD3-216ENST00000487043 ZNF598Q86UK7 904 aaKnown RBP7.66□□□□□ -1.18
PTCD3-216ENST00000487043 ZMYND15Q9H091 742 aa7.66□□□□□ -1.18
PTCD3-216ENST00000487043 ADH1BP00325 375 aa7.65□□□□□ -1.18
PTCD3-216ENST00000487043 TRIM67Q6ZTA4 783 aa7.65□□□□□ -1.18
PTCD3-216ENST00000487043 PXYLP1Q8TE99 480 aa7.65□□□□□ -1.18
PTCD3-216ENST00000487043 EMID1Q96A84 441 aaPredicted RBP7.65□□□□□ -1.18
PTCD3-216ENST00000487043 ZNF697Q5TEC3 545 aa7.64□□□□□ -1.19
PTCD3-216ENST00000487043 SLC6A16Q9GZN6 736 aa7.64□□□□□ -1.19
PTCD3-216ENST00000487043 PUS10Q3MIT2 529 aaKnown RBP7.63□□□□□ -1.19
PTCD3-216ENST00000487043 LIAT1Q6ZQX7 453 aa7.63□□□□□ -1.19
PTCD3-216ENST00000487043 NISCHQ9Y2I1 1504 aa7.62□□□□□ -1.19
PTCD3-216ENST00000487043 TNFRSF10AO00220 468 aa7.62□□□□□ -1.19
PTCD3-216ENST00000487043 GIGYF2Q6Y7W6 1299 aaKnown RBP7.62□□□□□ -1.19
PTCD3-216ENST00000487043 METTL3Q86U44 580 aaKnown RBP7.62□□□□□ -1.19
PTCD3-216ENST00000487043 SCUBE3Q8IX30 993 aa7.62□□□□□ -1.19
PTCD3-216ENST00000487043 FAM187AA6NFU0 413 aa7.61□□□□□ -1.19
PTCD3-216ENST00000487043 DGAT1O75907 488 aa7.61□□□□□ -1.19
PTCD3-216ENST00000487043 PRR20EP86478 221 aa7.61□□□□□ -1.19
PTCD3-216ENST00000487043 PRR20CP86479 221 aa7.61□□□□□ -1.19
PTCD3-216ENST00000487043 PRR20DP86480 221 aa7.61□□□□□ -1.19
PTCD3-216ENST00000487043 PRR20BP86481 221 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms