RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 PPLO60437 1756 aa13.83□□□□□ -0.19
MCF2L-227ENST00000486806 SETD1BQ9UPS6 1966 aaKnown RBP13.83□□□□□ -0.19
MCF2L-227ENST00000486806 RIMS2Q9UQ26 1411 aa13.82□□□□□ -0.2
MCF2L-227ENST00000486806 STAG3Q9UJ98 1225 aa13.82□□□□□ -0.2
MCF2L-227ENST00000486806 PRAG1Q86YV5 1406 aa13.81□□□□□ -0.2
MCF2L-227ENST00000486806 ZNF326Q5BKZ1 582 aaKnown RBP13.81□□□□□ -0.2
MCF2L-227ENST00000486806 PIK3C2GO75747 1445 aa13.81□□□□□ -0.2
MCF2L-227ENST00000486806 ZEB1P37275 1124 aaPredicted RBP13.8□□□□□ -0.2
MCF2L-227ENST00000486806 THEMISQ8N1K5 641 aaPredicted RBP13.8□□□□□ -0.2
MCF2L-227ENST00000486806 DCAF11Q8TEB1 546 aa13.8□□□□□ -0.2
MCF2L-227ENST00000486806 STAC3Q96MF2 364 aa13.8□□□□□ -0.2
MCF2L-227ENST00000486806 SCAF11Q99590 1463 aaKnown RBP13.79□□□□□ -0.2
MCF2L-227ENST00000486806 PPP1R15AO75807 674 aaPredicted RBP13.78□□□□□ -0.2
MCF2L-227ENST00000486806 ADGRF5Q8IZF2 1346 aa13.78□□□□□ -0.2
MCF2L-227ENST00000486806 SETBP1Q9Y6X0 1596 aa13.77□□□□□ -0.21
MCF2L-227ENST00000486806 PLEKHG1Q9ULL1 1385 aa13.76□□□□□ -0.21
MCF2L-227ENST00000486806 LTKP29376 864 aa13.76□□□□□ -0.21
MCF2L-227ENST00000486806 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.76□□□□□ -0.21
MCF2L-227ENST00000486806 NRXN3Q9Y4C0 1643 aa13.75□□□□□ -0.21
MCF2L-227ENST00000486806 RALGAPBQ86X10 1494 aa13.75□□□□□ -0.21
MCF2L-227ENST00000486806 VGFO15240 615 aaPredicted RBP13.75□□□□□ -0.21
MCF2L-227ENST00000486806 NBPF8Q3BBV2 869 aa13.75□□□□□ -0.21
MCF2L-227ENST00000486806 MED14O60244 1454 aa13.74□□□□□ -0.21
MCF2L-227ENST00000486806 NUTM2DQ5VT03 806 aaPredicted RBP13.74□□□□□ -0.21
MCF2L-227ENST00000486806 KDM2AQ9Y2K7 1162 aa13.74□□□□□ -0.21
MCF2L-227ENST00000486806 TRPM1Q7Z4N2 1603 aa13.74□□□□□ -0.21
MCF2L-227ENST00000486806 LAMC1P11047 1609 aa13.73□□□□□ -0.21
MCF2L-227ENST00000486806 HDGFP51858 240 aaKnown RBP13.73□□□□□ -0.21
MCF2L-227ENST00000486806 TXNDC2Q86VQ3 553 aa13.73□□□□□ -0.21
MCF2L-227ENST00000486806 POLR1AO95602 1720 aaPredicted RBP13.73□□□□□ -0.21
MCF2L-227ENST00000486806 KIAA1210Q9ULL0 1709 aa13.73□□□□□ -0.21
MCF2L-227ENST00000486806 ADAMTS13Q76LX8 1427 aa13.73□□□□□ -0.21
MCF2L-227ENST00000486806 EID1Q9Y6B2 187 aa13.72□□□□□ -0.21
MCF2L-227ENST00000486806 ASXL1Q8IXJ9 1541 aa13.72□□□□□ -0.21
MCF2L-227ENST00000486806 SETD1AO15047 1707 aaKnown RBP13.72□□□□□ -0.21
MCF2L-227ENST00000486806 IQGAP1P46940 1657 aa13.72□□□□□ -0.21
MCF2L-227ENST00000486806 GPRASP1Q5JY77 1395 aa13.71□□□□□ -0.21
MCF2L-227ENST00000486806 ADGRB1O14514 1584 aa13.71□□□□□ -0.21
MCF2L-227ENST00000486806 DIP2AQ14689 1571 aa13.71□□□□□ -0.21
MCF2L-227ENST00000486806 HSPA2P54652 639 aa13.71□□□□□ -0.21
MCF2L-227ENST00000486806 ANKLE2Q86XL3 938 aa13.71□□□□□ -0.21
MCF2L-227ENST00000486806 ALKQ9UM73 1620 aa13.71□□□□□ -0.22
MCF2L-227ENST00000486806 NPHP4O75161 1426 aaPredicted RBP13.7□□□□□ -0.22
MCF2L-227ENST00000486806 C14orf93Q9H972 538 aaKnown RBP13.69□□□□□ -0.22
MCF2L-227ENST00000486806 CFAP70Q5T0N1 1121 aa13.68□□□□□ -0.22
MCF2L-227ENST00000486806 NCKAP5LQ9HCH0 1330 aa13.67□□□□□ -0.22
MCF2L-227ENST00000486806 STRCQ7RTU9 1775 aa13.67□□□□□ -0.22
MCF2L-227ENST00000486806 ROCK2O75116 1388 aaKnown RBP13.67□□□□□ -0.22
MCF2L-227ENST00000486806 NBPF1Q3BBV0 1214 aa13.65□□□□□ -0.22
MCF2L-227ENST00000486806 METP08581 1390 aa13.65□□□□□ -0.22
MCF2L-227ENST00000486806 TBX22Q9Y458 520 aa13.64□□□□□ -0.23
MCF2L-227ENST00000486806 PIK3R4Q99570 1358 aa13.63□□□□□ -0.23
MCF2L-227ENST00000486806 TECPR2O15040 1411 aa13.63□□□□□ -0.23
MCF2L-227ENST00000486806 SLC26A8Q96RN1 970 aa13.62□□□□□ -0.23
MCF2L-227ENST00000486806 SENP3Q9H4L4 574 aaPredicted RBP13.62□□□□□ -0.23
MCF2L-227ENST00000486806 PTPRUQ92729 1446 aa13.62□□□□□ -0.23
MCF2L-227ENST00000486806 YTHDC2Q9H6S0 1430 aaKnown RBP13.62□□□□□ -0.23
MCF2L-227ENST00000486806 NWD1Q149M9 1564 aa13.62□□□□□ -0.23
MCF2L-227ENST00000486806 LRPPRCP42704 1394 aaKnown RBP13.61□□□□□ -0.23
MCF2L-227ENST00000486806 CARD11Q9BXL7 1154 aa13.61□□□□□ -0.23
MCF2L-227ENST00000486806 XRN1Q8IZH2 1706 aaKnown RBP13.61□□□□□ -0.23
MCF2L-227ENST00000486806 CPS1P31327 1500 aa13.6□□□□□ -0.23
MCF2L-227ENST00000486806 DLC1Q96QB1 1528 aa13.6□□□□□ -0.23
MCF2L-227ENST00000486806 TMEM132EQ6IEE7 984 aa13.6□□□□□ -0.23
MCF2L-227ENST00000486806 AEBP2Q6ZN18 517 aaPredicted RBP13.6□□□□□ -0.23
MCF2L-227ENST00000486806 KNDC1Q76NI1 1749 aa13.6□□□□□ -0.23
MCF2L-227ENST00000486806 BCANQ96GW7 911 aa13.6□□□□□ -0.23
MCF2L-227ENST00000486806 ABCC11Q96J66 1382 aa13.59□□□□□ -0.23
MCF2L-227ENST00000486806 USP47Q96K76 1375 aa13.59□□□□□ -0.23
MCF2L-227ENST00000486806 PTCH1Q13635 1447 aa13.59□□□□□ -0.23
MCF2L-227ENST00000486806 ARHGEF28Q8N1W1 1705 aaKnown RBP13.58□□□□□ -0.24
MCF2L-227ENST00000486806 EIF3AQ14152 1382 aaKnown RBP13.57□□□□□ -0.24
MCF2L-227ENST00000486806 FAM135BQ49AJ0 1406 aa13.56□□□□□ -0.24
MCF2L-227ENST00000486806 NKTRP30414 1462 aaKnown RBP13.55□□□□□ -0.24
MCF2L-227ENST00000486806 ROBO2Q9HCK4 1378 aa13.55□□□□□ -0.24
MCF2L-227ENST00000486806 CHD2O14647 1828 aaKnown RBP13.55□□□□□ -0.24
MCF2L-227ENST00000486806 EIF4G2P78344 907 aaKnown RBP eCLIP13.54□□□□□ -0.24
MCF2L-227ENST00000486806 TRAK1Q9UPV9 953 aa13.54□□□□□ -0.24
MCF2L-227ENST00000486806 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
MCF2L-227ENST00000486806 HSPA5P11021 654 aaKnown RBP13.53□□□□□ -0.24
MCF2L-227ENST00000486806 KCNA6P17658 529 aa13.53□□□□□ -0.24
MCF2L-227ENST00000486806 SIRT1Q96EB6 747 aa13.53□□□□□ -0.24
MCF2L-227ENST00000486806 AMOTL2Q9Y2J4 779 aa13.53□□□□□ -0.24
MCF2L-227ENST00000486806 SBNO2Q9Y2G9 1366 aa13.53□□□□□ -0.24
MCF2L-227ENST00000486806 STK26Q9P289 416 aa13.52□□□□□ -0.25
MCF2L-227ENST00000486806 PLEKHH1Q9ULM0 1364 aa13.52□□□□□ -0.25
MCF2L-227ENST00000486806 STRCP1A6NGW2 1772 aa13.51□□□□□ -0.25
MCF2L-227ENST00000486806 CENPJQ9HC77 1338 aaPredicted RBP13.51□□□□□ -0.25
MCF2L-227ENST00000486806 QRICH2Q9H0J4 1663 aa13.5□□□□□ -0.25
MCF2L-227ENST00000486806 ST20-MTHFSA0A0A6YYL1 179 aa13.5□□□□□ -0.25
MCF2L-227ENST00000486806 PRAM1Q96QH2 718 aa13.5□□□□□ -0.25
MCF2L-227ENST00000486806 TESK2Q96S53 571 aa13.5□□□□□ -0.25
MCF2L-227ENST00000486806 ADGRB2O60241 1585 aa13.49□□□□□ -0.25
MCF2L-227ENST00000486806 ZNF335Q9H4Z2 1342 aaPredicted RBP13.49□□□□□ -0.25
MCF2L-227ENST00000486806 TULP4Q9NRJ4 1543 aa13.48□□□□□ -0.25
MCF2L-227ENST00000486806 WAPLQ7Z5K2 1190 aa13.47□□□□□ -0.25
MCF2L-227ENST00000486806 LTBP4Q8N2S1 1624 aa13.46□□□□□ -0.25
MCF2L-227ENST00000486806 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.46□□□□□ -0.25
MCF2L-227ENST00000486806 ADGRL3Q9HAR2 1447 aa13.46□□□□□ -0.26
MCF2L-227ENST00000486806 NCOA3Q9Y6Q9 1424 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms