RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 GPRASP1Q5JY77 1395 aa13.58□□□□□ -0.24
CCDC171-208ENST00000486641 CLASP1Q7Z460 1538 aa13.58□□□□□ -0.24
CCDC171-208ENST00000486641 PDE3AQ14432 1141 aa13.58□□□□□ -0.24
CCDC171-208ENST00000486641 PANK1Q8TE04 598 aa13.58□□□□□ -0.24
CCDC171-208ENST00000486641 ITSN2Q9NZM3 1697 aa13.57□□□□□ -0.24
CCDC171-208ENST00000486641 APAF1O14727 1248 aa13.57□□□□□ -0.24
CCDC171-208ENST00000486641 TROQ12816 1431 aaPredicted RBP13.56□□□□□ -0.24
CCDC171-208ENST00000486641 CHMP5Q9NZZ3 219 aa13.56□□□□□ -0.24
CCDC171-208ENST00000486641 PRDM15P57071 1507 aaPredicted RBP13.56□□□□□ -0.24
CCDC171-208ENST00000486641 KNSTRNQ9Y448 316 aa13.56□□□□□ -0.24
CCDC171-208ENST00000486641 DMRT2Q9Y5R5 561 aa13.56□□□□□ -0.24
CCDC171-208ENST00000486641 EIF4G3O43432 1585 aaKnown RBP13.55□□□□□ -0.24
CCDC171-208ENST00000486641 MAGI2Q86UL8 1455 aa13.55□□□□□ -0.24
CCDC171-208ENST00000486641 RAPGEF6Q8TEU7 1601 aa13.55□□□□□ -0.24
CCDC171-208ENST00000486641 PTPRGP23470 1445 aa13.55□□□□□ -0.24
CCDC171-208ENST00000486641 E9PSI1 815 aa13.55□□□□□ -0.24
CCDC171-208ENST00000486641 AMER1Q5JTC6 1135 aaPredicted RBP13.54□□□□□ -0.24
CCDC171-208ENST00000486641 PDZRN3Q9UPQ7 1066 aa13.53□□□□□ -0.24
CCDC171-208ENST00000486641 CANXP27824 592 aaKnown RBP13.53□□□□□ -0.24
CCDC171-208ENST00000486641 PCDHB15Q9Y5E8 787 aa13.53□□□□□ -0.24
CCDC171-208ENST00000486641 LAMC1P11047 1609 aa13.53□□□□□ -0.24
CCDC171-208ENST00000486641 C9orf84Q5VXU9 1444 aa13.53□□□□□ -0.24
CCDC171-208ENST00000486641 TPM2P07951 284 aa13.52□□□□□ -0.24
CCDC171-208ENST00000486641 PDCL3Q9H2J4 239 aa13.52□□□□□ -0.24
CCDC171-208ENST00000486641 WDR7Q9Y4E6 1490 aa13.52□□□□□ -0.25
CCDC171-208ENST00000486641 CCDC144AA2RUR9 1427 aa13.52□□□□□ -0.25
CCDC171-208ENST00000486641 PMFBP1Q8TBY8 1022 aa13.52□□□□□ -0.25
CCDC171-208ENST00000486641 TRIM44Q96DX7 344 aaPredicted RBP13.52□□□□□ -0.25
CCDC171-208ENST00000486641 DISP1Q96F81 1524 aa13.52□□□□□ -0.25
CCDC171-208ENST00000486641 A2MP01023 1474 aa13.51□□□□□ -0.25
CCDC171-208ENST00000486641 PBRM1Q86U86 1689 aa13.51□□□□□ -0.25
CCDC171-208ENST00000486641 KIAA0556O60303 1618 aa13.51□□□□□ -0.25
CCDC171-208ENST00000486641 CENPJQ9HC77 1338 aaPredicted RBP13.51□□□□□ -0.25
CCDC171-208ENST00000486641 GAS2L3Q86XJ1 694 aa13.51□□□□□ -0.25
CCDC171-208ENST00000486641 TARBP1Q13395 1621 aaKnown RBP13.51□□□□□ -0.25
CCDC171-208ENST00000486641 ISY1Q9ULR0 285 aaKnown RBP13.5□□□□□ -0.25
CCDC171-208ENST00000486641 CDC42BPAQ5VT25 1732 aa13.5□□□□□ -0.25
CCDC171-208ENST00000486641 DDX11L8A8MPP1 907 aa13.5□□□□□ -0.25
CCDC171-208ENST00000486641 TSPY4P0CV99 314 aa13.5□□□□□ -0.25
CCDC171-208ENST00000486641 TSPY10P0CW01 314 aa13.5□□□□□ -0.25
CCDC171-208ENST00000486641 ZNF692Q9BU19 519 aaPredicted RBP13.5□□□□□ -0.25
CCDC171-208ENST00000486641 C22orf23Q9BZE7 217 aa13.5□□□□□ -0.25
CCDC171-208ENST00000486641 ZMYM3Q14202 1370 aa13.5□□□□□ -0.25
CCDC171-208ENST00000486641 NINLQ9Y2I6 1382 aa13.5□□□□□ -0.25
CCDC171-208ENST00000486641 PIK3C2GO75747 1445 aa13.49□□□□□ -0.25
CCDC171-208ENST00000486641 FAM135AQ9P2D6 1515 aa13.48□□□□□ -0.25
CCDC171-208ENST00000486641 ADAMTS12P58397 1594 aa13.48□□□□□ -0.25
CCDC171-208ENST00000486641 ABCC10Q5T3U5 1492 aa13.48□□□□□ -0.25
CCDC171-208ENST00000486641 SHANK2Q9UPX8 1470 aa13.48□□□□□ -0.25
CCDC171-208ENST00000486641 ADCY10Q96PN6 1610 aa13.48□□□□□ -0.25
CCDC171-208ENST00000486641 TNNQ9UQP3 1299 aa13.48□□□□□ -0.25
CCDC171-208ENST00000486641 RTEL1-TNFRSF6BF6WH68 1400 aa13.48□□□□□ -0.25
CCDC171-208ENST00000486641 PDS5BQ9NTI5 1447 aa13.48□□□□□ -0.25
CCDC171-208ENST00000486641 ABCC2Q92887 1545 aa13.47□□□□□ -0.25
CCDC171-208ENST00000486641 KIAA1211Q6ZU35 1233 aa13.47□□□□□ -0.25
CCDC171-208ENST00000486641 RLBP1P12271 317 aa13.47□□□□□ -0.25
CCDC171-208ENST00000486641 MFAP1P55081 439 aaKnown RBP13.47□□□□□ -0.25
CCDC171-208ENST00000486641 PLA2R1Q13018 1463 aa13.47□□□□□ -0.25
CCDC171-208ENST00000486641 HNRNPMP52272 730 aaKnown RBP eCLIP13.45□□□□□ -0.26
CCDC171-208ENST00000486641 RWDD1Q9H446 243 aaPredicted RBP13.45□□□□□ -0.26
CCDC171-208ENST00000486641 MYO5CQ9NQX4 1742 aa13.45□□□□□ -0.26
CCDC171-208ENST00000486641 ASXL1Q8IXJ9 1541 aa13.45□□□□□ -0.26
CCDC171-208ENST00000486641 DDIT3P35638 169 aa13.45□□□□□ -0.26
CCDC171-208ENST00000486641 AAMPQ13685 434 aa13.45□□□□□ -0.26
CCDC171-208ENST00000486641 WWC1Q8IX03 1113 aa13.45□□□□□ -0.26
CCDC171-208ENST00000486641 RARSP54136 660 aaKnown RBP13.44□□□□□ -0.26
CCDC171-208ENST00000486641 HSCBQ8IWL3 235 aa13.44□□□□□ -0.26
CCDC171-208ENST00000486641 TNPO1Q92973 898 aaKnown RBP13.44□□□□□ -0.26
CCDC171-208ENST00000486641 PLXNC1O60486 1568 aa13.44□□□□□ -0.26
CCDC171-208ENST00000486641 EIF2AK4Q9P2K8 1649 aaKnown RBP13.43□□□□□ -0.26
CCDC171-208ENST00000486641 CALD1Q05682 793 aaKnown RBP13.43□□□□□ -0.26
CCDC171-208ENST00000486641 PLB1Q6P1J6 1458 aa13.43□□□□□ -0.26
CCDC171-208ENST00000486641 CCDC141Q6ZP82 1450 aa13.43□□□□□ -0.26
CCDC171-208ENST00000486641 PODXL2Q9NZ53 605 aa13.42□□□□□ -0.26
CCDC171-208ENST00000486641 PRDM4Q9UKN5 801 aa13.42□□□□□ -0.26
CCDC171-208ENST00000486641 RBM10P98175 930 aaKnown RBP13.42□□□□□ -0.26
CCDC171-208ENST00000486641 NGEFQ8N5V2 710 aa13.42□□□□□ -0.26
CCDC171-208ENST00000486641 NCOA3Q9Y6Q9 1424 aa13.41□□□□□ -0.26
CCDC171-208ENST00000486641 NUP160Q12769 1436 aa13.41□□□□□ -0.26
CCDC171-208ENST00000486641 OFD1O75665 1012 aa13.41□□□□□ -0.26
CCDC171-208ENST00000486641 RIPK4P57078 832 aa13.41□□□□□ -0.26
CCDC171-208ENST00000486641 BCL2L13Q9BXK5 485 aa13.41□□□□□ -0.26
CCDC171-208ENST00000486641 PPP1R9BQ96SB3 815 aa13.4□□□□□ -0.26
CCDC171-208ENST00000486641 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.26
CCDC171-208ENST00000486641 SYNMO15061 1565 aa13.4□□□□□ -0.26
CCDC171-208ENST00000486641 SYNJ2O15056 1496 aa13.4□□□□□ -0.26
CCDC171-208ENST00000486641 NPC1L1Q9UHC9 1359 aa13.4□□□□□ -0.26
CCDC171-208ENST00000486641 CCDC173Q0VFZ6 552 aa13.4□□□□□ -0.26
CCDC171-208ENST00000486641 SKOR2Q2VWA4 1001 aaPredicted RBP13.4□□□□□ -0.26
CCDC171-208ENST00000486641 ZSCAN30Q86W11 494 aa13.4□□□□□ -0.26
CCDC171-208ENST00000486641 NEUROD2Q15784 382 aa13.39□□□□□ -0.27
CCDC171-208ENST00000486641 CDCA8Q53HL2 280 aa13.39□□□□□ -0.27
CCDC171-208ENST00000486641 GBP4Q96PP9 640 aa13.39□□□□□ -0.27
CCDC171-208ENST00000486641 RNF17Q9BXT8 1623 aaKnown RBP13.39□□□□□ -0.27
CCDC171-208ENST00000486641 RAB3GAP1Q15042 981 aa13.38□□□□□ -0.27
CCDC171-208ENST00000486641 SMC5Q8IY18 1101 aa13.38□□□□□ -0.27
CCDC171-208ENST00000486641 PLEKHD1A6NEE1 506 aa13.38□□□□□ -0.27
CCDC171-208ENST00000486641 RRP7AQ9Y3A4 280 aaKnown RBP13.38□□□□□ -0.27
CCDC171-208ENST00000486641 NASPP49321 788 aaPredicted RBP13.37□□□□□ -0.27
CCDC171-208ENST00000486641 SNX21Q969T3 373 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms