RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.88□□□□□ -0.51
SMC4-217ENST00000485867 IQGAP2Q13576 1575 aa11.88□□□□□ -0.51
SMC4-217ENST00000485867 LMTK3Q96Q04 1460 aa11.87□□□□□ -0.51
SMC4-217ENST00000485867 ZDHHC16Q969W1 377 aa11.86□□□□□ -0.51
SMC4-217ENST00000485867 ADAM33Q9BZ11 813 aa11.86□□□□□ -0.51
SMC4-217ENST00000485867 VPS9D1Q9Y2B5 631 aa11.86□□□□□ -0.51
SMC4-217ENST00000485867 PTPREP23469 700 aa11.85□□□□□ -0.51
SMC4-217ENST00000485867 SLC4A5Q9BY07 1137 aa11.85□□□□□ -0.51
SMC4-217ENST00000485867 DISP1Q96F81 1524 aa11.85□□□□□ -0.51
SMC4-217ENST00000485867 CFAP43Q8NDM7 1665 aa11.84□□□□□ -0.51
SMC4-217ENST00000485867 MAGI3Q5TCQ9 1506 aa11.83□□□□□ -0.52
SMC4-217ENST00000485867 PCDHGA10Q9Y5H3 936 aa11.83□□□□□ -0.52
SMC4-217ENST00000485867 ADAMTSL3P82987 1691 aa11.83□□□□□ -0.52
SMC4-217ENST00000485867 KIF27Q86VH2 1401 aa11.83□□□□□ -0.52
SMC4-217ENST00000485867 WDR7Q9Y4E6 1490 aa11.83□□□□□ -0.52
SMC4-217ENST00000485867 DPYSL4O14531 572 aa11.81□□□□□ -0.52
SMC4-217ENST00000485867 ZBED2Q9BTP6 218 aa11.81□□□□□ -0.52
SMC4-217ENST00000485867 PTPRMP28827 1452 aa11.81□□□□□ -0.52
SMC4-217ENST00000485867 PAXIP1Q6ZW49 1069 aaPredicted RBP11.8□□□□□ -0.52
SMC4-217ENST00000485867 PCF11O94913 1555 aaKnown RBP11.79□□□□□ -0.52
SMC4-217ENST00000485867 HCSTQ9UBK5 93 aa11.79□□□□□ -0.52
SMC4-217ENST00000485867 CARMIL1Q5VZK9 1371 aa11.79□□□□□ -0.52
SMC4-217ENST00000485867 KIAA0556O60303 1618 aa11.78□□□□□ -0.52
SMC4-217ENST00000485867 CD109Q6YHK3 1445 aa11.78□□□□□ -0.52
SMC4-217ENST00000485867 PHF14O94880 888 aa11.78□□□□□ -0.52
SMC4-217ENST00000485867 CFAP44Q96MT7 982 aa11.78□□□□□ -0.52
SMC4-217ENST00000485867 UGGT2Q9NYU1 1516 aa11.77□□□□□ -0.52
SMC4-217ENST00000485867 BHMG1C9JSJ3 638 aaPredicted RBP11.77□□□□□ -0.53
SMC4-217ENST00000485867 SUPT5HO00267 1087 aaKnown RBP11.77□□□□□ -0.53
SMC4-217ENST00000485867 TYW1BQ6NUM6 668 aa11.77□□□□□ -0.53
SMC4-217ENST00000485867 FBXW7Q969H0 707 aa11.76□□□□□ -0.53
SMC4-217ENST00000485867 STAC3Q96MF2 364 aa11.76□□□□□ -0.53
SMC4-217ENST00000485867 BCORL1Q5H9F3 1711 aa11.75□□□□□ -0.53
SMC4-217ENST00000485867 KCTD12Q96CX2 325 aaKnown RBP11.75□□□□□ -0.53
SMC4-217ENST00000485867 ARAP3Q8WWN8 1544 aa11.75□□□□□ -0.53
SMC4-217ENST00000485867 MADDQ8WXG6 1647 aa11.75□□□□□ -0.53
SMC4-217ENST00000485867 PPP1R3GB7ZBB8 358 aa11.74□□□□□ -0.53
SMC4-217ENST00000485867 SOCS7O14512 581 aa11.73□□□□□ -0.53
SMC4-217ENST00000485867 ILDR2Q71H61 639 aa11.73□□□□□ -0.53
SMC4-217ENST00000485867 COL9A1P20849 921 aa11.72□□□□□ -0.53
SMC4-217ENST00000485867 EPAS1Q99814 870 aa11.72□□□□□ -0.53
SMC4-217ENST00000485867 ABCA8O94911 1581 aa11.71□□□□□ -0.54
SMC4-217ENST00000485867 PDIA6Q15084 440 aa11.7□□□□□ -0.54
SMC4-217ENST00000485867 RIMS1Q86UR5 1692 aaKnown RBP11.7□□□□□ -0.54
SMC4-217ENST00000485867 DISP3Q9P2K9 1392 aa11.69□□□□□ -0.54
SMC4-217ENST00000485867 E2F4Q16254 413 aa11.69□□□□□ -0.54
SMC4-217ENST00000485867 PROX2Q3B8N5 592 aa11.68□□□□□ -0.54
SMC4-217ENST00000485867 MRPL50Q8N5N7 158 aaKnown RBP11.68□□□□□ -0.54
SMC4-217ENST00000485867 DDX12PQ92771 950 aa11.68□□□□□ -0.54
SMC4-217ENST00000485867 C6orf132Q5T0Z8 1188 aa11.67□□□□□ -0.54
SMC4-217ENST00000485867 NBPF3Q9H094 633 aa11.67□□□□□ -0.54
SMC4-217ENST00000485867 ARIH1Q9Y4X5 557 aaPredicted RBP11.67□□□□□ -0.54
SMC4-217ENST00000485867 FRMPD1Q5SYB0 1578 aa11.67□□□□□ -0.54
SMC4-217ENST00000485867 CERKQ8TCT0 537 aa11.66□□□□□ -0.54
SMC4-217ENST00000485867 PLA2G2EQ9NZK7 142 aa11.66□□□□□ -0.54
SMC4-217ENST00000485867 RABGEF1Q9UJ41 708 aa11.66□□□□□ -0.54
SMC4-217ENST00000485867 CTTNBP2Q8WZ74 1663 aa11.65□□□□□ -0.54
SMC4-217ENST00000485867 ABCA9Q8IUA7 1624 aa11.65□□□□□ -0.54
SMC4-217ENST00000485867 SPDYE16A6NNV3 312 aaPredicted RBP11.65□□□□□ -0.54
SMC4-217ENST00000485867 RAPGEF2Q9Y4G8 1499 aa11.64□□□□□ -0.55
SMC4-217ENST00000485867 SPATA31D1Q6ZQQ2 1576 aa11.64□□□□□ -0.55
SMC4-217ENST00000485867 HSPA2P54652 639 aa11.64□□□□□ -0.55
SMC4-217ENST00000485867 THSD4Q6ZMP0 1018 aa11.64□□□□□ -0.55
SMC4-217ENST00000485867 WDR70Q9NW82 654 aa11.64□□□□□ -0.55
SMC4-217ENST00000485867 PHLDB1Q86UU1 1377 aa11.64□□□□□ -0.55
SMC4-217ENST00000485867 ARHGEF40Q8TER5 1519 aa11.63□□□□□ -0.55
SMC4-217ENST00000485867 GOLGA8CPA6NN73 597 aa11.62□□□□□ -0.55
SMC4-217ENST00000485867 RAPGEF3O95398 923 aa11.62□□□□□ -0.55
SMC4-217ENST00000485867 PTPN5P54829 565 aa11.62□□□□□ -0.55
SMC4-217ENST00000485867 WNT2BQ93097 391 aa11.62□□□□□ -0.55
SMC4-217ENST00000485867 RBM33Q96EV2 1170 aaKnown RBP11.62□□□□□ -0.55
SMC4-217ENST00000485867 EN1Q05925 392 aaPredicted RBP11.61□□□□□ -0.55
SMC4-217ENST00000485867 NBR1Q14596 966 aa11.61□□□□□ -0.55
SMC4-217ENST00000485867 GOLGA3Q08378 1498 aa11.61□□□□□ -0.55
SMC4-217ENST00000485867 NEO1Q92859 1461 aa11.61□□□□□ -0.55
SMC4-217ENST00000485867 ARID4BQ4LE39 1312 aaPredicted RBP11.6□□□□□ -0.55
SMC4-217ENST00000485867 ONECUT3O60422 494 aaPredicted RBP11.59□□□□□ -0.55
SMC4-217ENST00000485867 KIAA1468Q9P260 1216 aa11.59□□□□□ -0.55
SMC4-217ENST00000485867 RICTORQ6R327 1708 aa11.59□□□□□ -0.55
SMC4-217ENST00000485867 SIGLEC1Q9BZZ2 1709 aa11.57□□□□□ -0.56
SMC4-217ENST00000485867 TRIM6-TRIM34B2RNG4 842 aa11.57□□□□□ -0.56
SMC4-217ENST00000485867 TSR1Q2NL82 804 aaKnown RBP11.57□□□□□ -0.56
SMC4-217ENST00000485867 LAPTM4BQ86VI4 370 aa11.57□□□□□ -0.56
SMC4-217ENST00000485867 ATP10BO94823 1461 aa11.57□□□□□ -0.56
SMC4-217ENST00000485867 FER1L4A9Z1Z3 1794 aa11.56□□□□□ -0.56
SMC4-217ENST00000485867 MAP3K7O43318 606 aa11.56□□□□□ -0.56
SMC4-217ENST00000485867 TTC37Q6PGP7 1564 aa11.55□□□□□ -0.56
SMC4-217ENST00000485867 PRIM1P49642 420 aaKnown RBP11.55□□□□□ -0.56
SMC4-217ENST00000485867 TSHZ2Q9NRE2 1034 aa11.55□□□□□ -0.56
SMC4-217ENST00000485867 FANCAO15360 1455 aa11.54□□□□□ -0.56
SMC4-217ENST00000485867 PREX1Q8TCU6 1659 aa11.54□□□□□ -0.56
SMC4-217ENST00000485867 STRCQ7RTU9 1775 aa11.54□□□□□ -0.56
SMC4-217ENST00000485867 ARID3CA6NKF2 412 aa11.53□□□□□ -0.56
SMC4-217ENST00000485867 ANKK1Q8NFD2 765 aa11.53□□□□□ -0.56
SMC4-217ENST00000485867 POGZQ7Z3K3 1410 aa11.52□□□□□ -0.56
SMC4-217ENST00000485867 ZMYM4Q5VZL5 1548 aa11.52□□□□□ -0.57
SMC4-217ENST00000485867 GRXCR2A6NFK2 248 aa11.52□□□□□ -0.57
SMC4-217ENST00000485867 SEPT9Q9UHD8 586 aaPredicted RBP11.52□□□□□ -0.57
SMC4-217ENST00000485867 DENND4BO75064 1496 aaPredicted RBP11.51□□□□□ -0.57
SMC4-217ENST00000485867 ZFRQ96KR1 1074 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms