RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 UHRF1BP1Q6BDS2 1440 aa14.01□□□□□ -0.17
LIMK1-205ENST00000483414 IQGAP1P46940 1657 aa14.01□□□□□ -0.17
LIMK1-205ENST00000483414 LMTK3Q96Q04 1460 aa14.01□□□□□ -0.17
LIMK1-205ENST00000483414 STRCQ7RTU9 1775 aa14□□□□□ -0.17
LIMK1-205ENST00000483414 IDI1Q13907 227 aa14□□□□□ -0.17
LIMK1-205ENST00000483414 LAMC1P11047 1609 aa13.99□□□□□ -0.17
LIMK1-205ENST00000483414 SLC52A1Q9NWF4 448 aa13.99□□□□□ -0.17
LIMK1-205ENST00000483414 SETBP1Q9Y6X0 1596 aa13.99□□□□□ -0.17
LIMK1-205ENST00000483414 ASXL1Q8IXJ9 1541 aa13.96□□□□□ -0.17
LIMK1-205ENST00000483414 PIK3C2GO75747 1445 aa13.96□□□□□ -0.17
LIMK1-205ENST00000483414 PRAG1Q86YV5 1406 aa13.96□□□□□ -0.18
LIMK1-205ENST00000483414 TIMELESSQ9UNS1 1208 aa13.95□□□□□ -0.18
LIMK1-205ENST00000483414 ADGRB1O14514 1584 aa13.95□□□□□ -0.18
LIMK1-205ENST00000483414 MED14O60244 1454 aa13.94□□□□□ -0.18
LIMK1-205ENST00000483414 CENPBP07199 599 aaPredicted RBP13.94□□□□□ -0.18
LIMK1-205ENST00000483414 TMEM2Q9UHN6 1383 aa13.92□□□□□ -0.18
LIMK1-205ENST00000483414 KNDC1Q76NI1 1749 aa13.92□□□□□ -0.18
LIMK1-205ENST00000483414 L3MBTL2Q969R5 705 aa13.92□□□□□ -0.18
LIMK1-205ENST00000483414 RALGAPBQ86X10 1494 aa13.91□□□□□ -0.18
LIMK1-205ENST00000483414 ESF1Q9H501 851 aaKnown RBP13.91□□□□□ -0.18
LIMK1-205ENST00000483414 ALKQ9UM73 1620 aa13.9□□□□□ -0.18
LIMK1-205ENST00000483414 DIP2AQ14689 1571 aa13.9□□□□□ -0.18
LIMK1-205ENST00000483414 RIMS2Q9UQ26 1411 aa13.9□□□□□ -0.18
LIMK1-205ENST00000483414 RPGRIP1LQ68CZ1 1315 aa13.89□□□□□ -0.19
LIMK1-205ENST00000483414 ARHGEF28Q8N1W1 1705 aaKnown RBP13.89□□□□□ -0.19
LIMK1-205ENST00000483414 XRN1Q8IZH2 1706 aaKnown RBP13.88□□□□□ -0.19
LIMK1-205ENST00000483414 PPP1R15AO75807 674 aaPredicted RBP13.88□□□□□ -0.19
LIMK1-205ENST00000483414 NBPF8Q3BBV2 869 aa13.88□□□□□ -0.19
LIMK1-205ENST00000483414 GPRASP1Q5JY77 1395 aa13.88□□□□□ -0.19
LIMK1-205ENST00000483414 ADAMTS13Q76LX8 1427 aa13.88□□□□□ -0.19
LIMK1-205ENST00000483414 STRCP1A6NGW2 1772 aa13.87□□□□□ -0.19
LIMK1-205ENST00000483414 CHD2O14647 1828 aaKnown RBP13.87□□□□□ -0.19
LIMK1-205ENST00000483414 SCAF11Q99590 1463 aaKnown RBP13.87□□□□□ -0.19
LIMK1-205ENST00000483414 TONSLQ96HA7 1378 aa13.87□□□□□ -0.19
LIMK1-205ENST00000483414 ZNF316A6NFI3 1004 aaPredicted RBP13.86□□□□□ -0.19
LIMK1-205ENST00000483414 ADGRF5Q8IZF2 1346 aa13.86□□□□□ -0.19
LIMK1-205ENST00000483414 NWD1Q149M9 1564 aa13.86□□□□□ -0.19
LIMK1-205ENST00000483414 PLEKHG1Q9ULL1 1385 aa13.85□□□□□ -0.19
LIMK1-205ENST00000483414 LTKP29376 864 aa13.84□□□□□ -0.19
LIMK1-205ENST00000483414 STAC3Q96MF2 364 aa13.84□□□□□ -0.19
LIMK1-205ENST00000483414 CPS1P31327 1500 aa13.82□□□□□ -0.2
LIMK1-205ENST00000483414 XIRP1Q702N8 1843 aaKnown RBP13.81□□□□□ -0.2
LIMK1-205ENST00000483414 DCAF11Q8TEB1 546 aa13.81□□□□□ -0.2
LIMK1-205ENST00000483414 RGL3Q3MIN7 710 aa13.8□□□□□ -0.2
LIMK1-205ENST00000483414 DLC1Q96QB1 1528 aa13.79□□□□□ -0.2
LIMK1-205ENST00000483414 TECPR2O15040 1411 aa13.79□□□□□ -0.2
LIMK1-205ENST00000483414 PTPRUQ92729 1446 aa13.78□□□□□ -0.2
LIMK1-205ENST00000483414 THEMISQ8N1K5 641 aaPredicted RBP13.78□□□□□ -0.2
LIMK1-205ENST00000483414 C14orf93Q9H972 538 aaKnown RBP13.78□□□□□ -0.2
LIMK1-205ENST00000483414 QRICH2Q9H0J4 1663 aa13.78□□□□□ -0.2
LIMK1-205ENST00000483414 NPHP4O75161 1426 aaPredicted RBP13.76□□□□□ -0.21
LIMK1-205ENST00000483414 METP08581 1390 aa13.75□□□□□ -0.21
LIMK1-205ENST00000483414 PLPPR3Q6T4P5 718 aa13.75□□□□□ -0.21
LIMK1-205ENST00000483414 VGFO15240 615 aaPredicted RBP13.75□□□□□ -0.21
LIMK1-205ENST00000483414 ADGRB2O60241 1585 aa13.74□□□□□ -0.21
LIMK1-205ENST00000483414 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.74□□□□□ -0.21
LIMK1-205ENST00000483414 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.74□□□□□ -0.21
LIMK1-205ENST00000483414 NBPF1Q3BBV0 1214 aa13.74□□□□□ -0.21
LIMK1-205ENST00000483414 MIER1Q8N108 512 aa13.74□□□□□ -0.21
LIMK1-205ENST00000483414 NALCNQ8IZF0 1738 aa13.73□□□□□ -0.21
LIMK1-205ENST00000483414 ZNF326Q5BKZ1 582 aaKnown RBP13.73□□□□□ -0.21
LIMK1-205ENST00000483414 NUTM2DQ5VT03 806 aaPredicted RBP13.73□□□□□ -0.21
LIMK1-205ENST00000483414 CHGAP10645 457 aaKnown RBP13.72□□□□□ -0.21
LIMK1-205ENST00000483414 YTHDC2Q9H6S0 1430 aaKnown RBP13.72□□□□□ -0.21
LIMK1-205ENST00000483414 CFAP70Q5T0N1 1121 aa13.71□□□□□ -0.21
LIMK1-205ENST00000483414 KDM2AQ9Y2K7 1162 aa13.71□□□□□ -0.21
LIMK1-205ENST00000483414 PTCH1Q13635 1447 aa13.71□□□□□ -0.21
LIMK1-205ENST00000483414 MYOM1P52179 1685 aa13.71□□□□□ -0.21
LIMK1-205ENST00000483414 PIK3R4Q99570 1358 aa13.71□□□□□ -0.22
LIMK1-205ENST00000483414 TXNDC2Q86VQ3 553 aa13.71□□□□□ -0.22
LIMK1-205ENST00000483414 HSPA2P54652 639 aa13.69□□□□□ -0.22
LIMK1-205ENST00000483414 NCKAP5LQ9HCH0 1330 aa13.69□□□□□ -0.22
LIMK1-205ENST00000483414 LRPPRCP42704 1394 aaKnown RBP13.69□□□□□ -0.22
LIMK1-205ENST00000483414 ROCK2O75116 1388 aaKnown RBP13.69□□□□□ -0.22
LIMK1-205ENST00000483414 STAG3Q9UJ98 1225 aa13.68□□□□□ -0.22
LIMK1-205ENST00000483414 TOPAZ1Q8N9V7 1692 aa13.68□□□□□ -0.22
LIMK1-205ENST00000483414 ANKLE2Q86XL3 938 aa13.68□□□□□ -0.22
LIMK1-205ENST00000483414 LTBP4Q8N2S1 1624 aa13.68□□□□□ -0.22
LIMK1-205ENST00000483414 ABCC11Q96J66 1382 aa13.68□□□□□ -0.22
LIMK1-205ENST00000483414 TBX22Q9Y458 520 aa13.68□□□□□ -0.22
LIMK1-205ENST00000483414 MYT1Q01538 1121 aa13.68□□□□□ -0.22
LIMK1-205ENST00000483414 TULP4Q9NRJ4 1543 aa13.67□□□□□ -0.22
LIMK1-205ENST00000483414 FAM135BQ49AJ0 1406 aa13.67□□□□□ -0.22
LIMK1-205ENST00000483414 USP32Q8NFA0 1604 aa13.67□□□□□ -0.22
LIMK1-205ENST00000483414 NKTRP30414 1462 aaKnown RBP13.67□□□□□ -0.22
LIMK1-205ENST00000483414 USP47Q96K76 1375 aa13.66□□□□□ -0.22
LIMK1-205ENST00000483414 SBNO2Q9Y2G9 1366 aa13.66□□□□□ -0.22
LIMK1-205ENST00000483414 EID1Q9Y6B2 187 aa13.65□□□□□ -0.22
LIMK1-205ENST00000483414 ROBO2Q9HCK4 1378 aa13.65□□□□□ -0.22
LIMK1-205ENST00000483414 HDGFP51858 240 aaKnown RBP13.65□□□□□ -0.22
LIMK1-205ENST00000483414 FMN2Q9NZ56 1722 aa13.65□□□□□ -0.22
LIMK1-205ENST00000483414 TESK2Q96S53 571 aa13.63□□□□□ -0.23
LIMK1-205ENST00000483414 TMEM132EQ6IEE7 984 aa13.63□□□□□ -0.23
LIMK1-205ENST00000483414 PLEKHH1Q9ULM0 1364 aa13.62□□□□□ -0.23
LIMK1-205ENST00000483414 SIRT1Q96EB6 747 aa13.62□□□□□ -0.23
LIMK1-205ENST00000483414 CDC42BPGQ6DT37 1551 aa13.62□□□□□ -0.23
LIMK1-205ENST00000483414 RGPD8O14715 1765 aaPredicted RBP13.62□□□□□ -0.23
LIMK1-205ENST00000483414 SLC26A8Q96RN1 970 aa13.6□□□□□ -0.23
LIMK1-205ENST00000483414 LRRC7Q96NW7 1537 aa13.6□□□□□ -0.23
LIMK1-205ENST00000483414 CARD11Q9BXL7 1154 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms