RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TMUB1Q9BVT8 246 aa13.67□□□□□ -0.22
USP40-213ENST00000483216 MDM2Q00987 491 aaPredicted RBP13.66□□□□□ -0.22
USP40-213ENST00000483216 LRCH3Q96II8 777 aa13.66□□□□□ -0.22
USP40-213ENST00000483216 GPCPD1Q9NPB8 672 aa13.66□□□□□ -0.22
USP40-213ENST00000483216 SOWAHBA6NEL2 793 aa13.65□□□□□ -0.22
USP40-213ENST00000483216 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.65□□□□□ -0.22
USP40-213ENST00000483216 KCTD12Q96CX2 325 aaKnown RBP13.64□□□□□ -0.23
USP40-213ENST00000483216 SLC4A3P48751 1232 aa13.63□□□□□ -0.23
USP40-213ENST00000483216 TTLL12Q14166 644 aaPredicted RBP13.63□□□□□ -0.23
USP40-213ENST00000483216 SLF2Q8IX21 1173 aa13.63□□□□□ -0.23
USP40-213ENST00000483216 THSD4Q6ZMP0 1018 aa13.62□□□□□ -0.23
USP40-213ENST00000483216 PARP9Q8IXQ6 854 aa13.62□□□□□ -0.23
USP40-213ENST00000483216 REPIN1Q9BWE0 567 aaKnown RBP13.61□□□□□ -0.23
USP40-213ENST00000483216 BCAMP50895 628 aa13.6□□□□□ -0.23
USP40-213ENST00000483216 SULF1Q8IWU6 871 aa13.6□□□□□ -0.23
USP40-213ENST00000483216 RNF166Q96A37 237 aaPredicted RBP13.6□□□□□ -0.23
USP40-213ENST00000483216 MMRN1Q13201 1228 aa13.59□□□□□ -0.23
USP40-213ENST00000483216 GIGYF2Q6Y7W6 1299 aaKnown RBP13.58□□□□□ -0.24
USP40-213ENST00000483216 NECTIN2Q92692 538 aa13.58□□□□□ -0.24
USP40-213ENST00000483216 FAM217BQ9NTX9 383 aaPredicted RBP13.58□□□□□ -0.24
USP40-213ENST00000483216 TSR3Q9UJK0 312 aaKnown RBP13.57□□□□□ -0.24
USP40-213ENST00000483216 RSPH4AQ5TD94 716 aa13.56□□□□□ -0.24
USP40-213ENST00000483216 DDX11L8A8MPP1 907 aa13.55□□□□□ -0.24
USP40-213ENST00000483216 RNF40O75150 1001 aa13.55□□□□□ -0.24
USP40-213ENST00000483216 HPS5Q9UPZ3 1129 aa13.55□□□□□ -0.24
USP40-213ENST00000483216 SLC10A3P09131 477 aa13.54□□□□□ -0.24
USP40-213ENST00000483216 SSTR3P32745 418 aaPredicted RBP13.54□□□□□ -0.24
USP40-213ENST00000483216 PPP4CP60510 307 aa13.54□□□□□ -0.24
USP40-213ENST00000483216 BRPF1P55201 1214 aaPredicted RBP13.53□□□□□ -0.24
USP40-213ENST00000483216 CD46P15529 392 aa13.52□□□□□ -0.25
USP40-213ENST00000483216 NEUROD2Q15784 382 aa13.52□□□□□ -0.25
USP40-213ENST00000483216 GPBP1L1Q9HC44 474 aaPredicted RBP13.52□□□□□ -0.25
USP40-213ENST00000483216 RDH13Q8NBN7 331 aa13.51□□□□□ -0.25
USP40-213ENST00000483216 KDM4CQ9H3R0 1056 aa13.51□□□□□ -0.25
USP40-213ENST00000483216 WBP1LQ9NX94 342 aa13.5□□□□□ -0.25
USP40-213ENST00000483216 MS4A1P11836 297 aa13.49□□□□□ -0.25
USP40-213ENST00000483216 PTPN5P54829 565 aa13.49□□□□□ -0.25
USP40-213ENST00000483216 NYAP1Q6ZVC0 841 aa13.49□□□□□ -0.25
USP40-213ENST00000483216 HCSTQ9UBK5 93 aa13.49□□□□□ -0.25
USP40-213ENST00000483216 CFHP08603 1231 aa13.46□□□□□ -0.25
USP40-213ENST00000483216 GCGRP47871 477 aa13.46□□□□□ -0.25
USP40-213ENST00000483216 PRR14Q9BWN1 585 aa13.46□□□□□ -0.25
USP40-213ENST00000483216 KMT5BQ4FZB7 885 aa13.45□□□□□ -0.26
USP40-213ENST00000483216 APLP1P51693 650 aa13.43□□□□□ -0.26
USP40-213ENST00000483216 BEGAINQ9BUH8 593 aa13.43□□□□□ -0.26
USP40-213ENST00000483216 ACTN4O43707 911 aaKnown RBP13.42□□□□□ -0.26
USP40-213ENST00000483216 DDRGK1Q96HY6 314 aa13.4□□□□□ -0.26
USP40-213ENST00000483216 FAM117AQ9C073 453 aa13.39□□□□□ -0.27
USP40-213ENST00000483216 KDM4AO75164 1064 aa13.38□□□□□ -0.27
USP40-213ENST00000483216 USP46P62068 366 aa13.36□□□□□ -0.27
USP40-213ENST00000483216 DIXDC1Q155Q3 683 aa13.36□□□□□ -0.27
USP40-213ENST00000483216 NUTM1Q86Y26 1132 aa13.36□□□□□ -0.27
USP40-213ENST00000483216 FUT2Q10981 343 aa13.35□□□□□ -0.27
USP40-213ENST00000483216 SPIRE2Q8WWL2 714 aa13.35□□□□□ -0.27
USP40-213ENST00000483216 PLEKHG3A1L390 1219 aa13.33□□□□□ -0.28
USP40-213ENST00000483216 ATP6V1AP38606 617 aa13.33□□□□□ -0.28
USP40-213ENST00000483216 GRIPAP1Q4V328 841 aa13.33□□□□□ -0.28
USP40-213ENST00000483216 TBC1D2Q9BYX2 928 aa13.33□□□□□ -0.28
USP40-213ENST00000483216 PCDHB3Q9Y5E6 796 aa13.33□□□□□ -0.28
USP40-213ENST00000483216 RSPH6AQ9H0K4 717 aa13.31□□□□□ -0.28
USP40-213ENST00000483216 PLSCR2Q9NRY7 297 aa13.31□□□□□ -0.28
USP40-213ENST00000483216 HOXA2O43364 376 aa13.3□□□□□ -0.28
USP40-213ENST00000483216 IL27Q8NEV9 243 aa13.3□□□□□ -0.28
USP40-213ENST00000483216 MORN1Q5T089 497 aa13.29□□□□□ -0.28
USP40-213ENST00000483216 PUS10Q3MIT2 529 aaKnown RBP13.28□□□□□ -0.28
USP40-213ENST00000483216 TJAP1Q5JTD0 557 aa13.27□□□□□ -0.29
USP40-213ENST00000483216 BLOC1S3Q6QNY0 202 aa13.27□□□□□ -0.29
USP40-213ENST00000483216 MTRQ99707 1265 aa13.27□□□□□ -0.29
USP40-213ENST00000483216 MOXD2PA6NHM9 499 aa13.26□□□□□ -0.29
USP40-213ENST00000483216 GJA5P36382 358 aa13.26□□□□□ -0.29
USP40-213ENST00000483216 MYSM1Q5VVJ2 828 aa13.26□□□□□ -0.29
USP40-213ENST00000483216 NR1I2O75469 434 aa13.25□□□□□ -0.29
USP40-213ENST00000483216 ITGBL1O95965 494 aaPredicted RBP13.25□□□□□ -0.29
USP40-213ENST00000483216 IL21Q9HBE4 155 aa13.25□□□□□ -0.29
USP40-213ENST00000483216 COPS2P61201 443 aa13.24□□□□□ -0.29
USP40-213ENST00000483216 SH3D19Q5HYK7 790 aa13.24□□□□□ -0.29
USP40-213ENST00000483216 SPTLC1O15269 473 aa13.23□□□□□ -0.29
USP40-213ENST00000483216 NDUFV2P19404 249 aa13.23□□□□□ -0.29
USP40-213ENST00000483216 RSBN1LQ6PCB5 846 aaPredicted RBP13.23□□□□□ -0.29
USP40-213ENST00000483216 SCUBE3Q8IX30 993 aa13.23□□□□□ -0.29
USP40-213ENST00000483216 GOPCQ9HD26 462 aa13.23□□□□□ -0.29
USP40-213ENST00000483216 SLC27A5Q9Y2P5 690 aa13.23□□□□□ -0.29
USP40-213ENST00000483216 SKIV2LQ15477 1246 aaKnown RBP13.22□□□□□ -0.29
USP40-213ENST00000483216 RIC3Q7Z5B4 369 aa13.22□□□□□ -0.29
USP40-213ENST00000483216 HLA-CQ95604 372 aa13.22□□□□□ -0.29
USP40-213ENST00000483216 FDX1P10109 184 aa13.21□□□□□ -0.29
USP40-213ENST00000483216 SALL2Q9Y467 1007 aaPredicted RBP13.21□□□□□ -0.29
USP40-213ENST00000483216 ZPR1O75312 459 aa13.2□□□□□ -0.3
USP40-213ENST00000483216 KCNC4Q03721 635 aa13.2□□□□□ -0.3
USP40-213ENST00000483216 TUSC1Q2TAM9 212 aa13.2□□□□□ -0.3
USP40-213ENST00000483216 GUCA2AQ02747 115 aa13.19□□□□□ -0.3
USP40-213ENST00000483216 Q3C1V9 767 aa13.19□□□□□ -0.3
USP40-213ENST00000483216 PCDHGC3Q9UN70 934 aa13.19□□□□□ -0.3
USP40-213ENST00000483216 CLK2P49760 499 aaKnown RBP13.18□□□□□ -0.3
USP40-213ENST00000483216 ZNF516Q92618 1163 aa13.18□□□□□ -0.3
USP40-213ENST00000483216 THAP11Q96EK4 314 aa13.17□□□□□ -0.3
USP40-213ENST00000483216 POLR3EQ9NVU0 708 aa13.17□□□□□ -0.3
USP40-213ENST00000483216 LIMD1Q9UGP4 676 aa13.17□□□□□ -0.3
USP40-213ENST00000483216 FMNL1O95466 1100 aaPredicted RBP13.15□□□□□ -0.3
USP40-213ENST00000483216 TMEM132AQ24JP5 1023 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms